Wall clock time and date at job start Tue Mar 31 2020 06:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46902 * 109.47160 * 2 1 4 4 C 1.46894 * 109.47283 * 239.99908 * 2 1 3 5 5 C 1.46905 * 109.47088 * 120.00081 * 2 1 3 6 6 C 1.52995 * 109.47397 * 61.76396 * 5 2 1 7 7 H 1.09000 * 109.47258 * 174.59146 * 6 5 2 8 8 C 1.50698 * 109.47222 * 294.59720 * 6 5 2 9 9 H 1.07994 * 120.00238 * 114.84913 * 8 6 5 10 10 C 1.37875 * 120.00086 * 294.84817 * 8 6 5 11 11 N 1.31523 * 119.99670 * 351.94617 * 10 8 6 12 12 Si 1.86799 * 120.00393 * 171.94460 * 10 8 6 13 13 H 1.48500 * 109.47267 * 180.02562 * 12 10 8 14 14 H 1.48504 * 109.46951 * 300.00065 * 12 10 8 15 15 H 1.48499 * 109.47041 * 60.00319 * 12 10 8 16 16 O 1.42903 * 109.47032 * 54.59321 * 6 5 2 17 17 C 1.42904 * 113.99873 * 95.67032 * 16 6 5 18 18 C 1.53000 * 109.47060 * 184.09432 * 17 16 6 19 19 C 1.50700 * 109.46998 * 180.02562 * 18 17 16 20 20 C 1.38431 * 122.53572 * 90.00107 * 19 18 17 21 21 C 1.33394 * 114.91786 * 179.97438 * 20 19 18 22 22 S 1.75884 * 109.59303 * 359.97438 * 21 20 19 23 23 C 1.33387 * 122.54252 * 269.70591 * 19 18 17 24 24 H 1.09000 * 109.47232 * 280.49535 * 1 2 3 25 25 H 1.08996 * 109.47370 * 40.49522 * 1 2 3 26 26 H 1.09000 * 109.46858 * 160.49526 * 1 2 3 27 27 H 1.08999 * 109.46916 * 179.97438 * 3 2 1 28 28 H 1.08993 * 109.47055 * 300.00055 * 3 2 1 29 29 H 1.09002 * 109.46741 * 60.00212 * 3 2 1 30 30 H 1.09002 * 109.47314 * 320.79916 * 4 2 1 31 31 H 1.09003 * 109.47513 * 80.79779 * 4 2 1 32 32 H 1.09005 * 109.47389 * 200.79503 * 4 2 1 33 33 H 1.09005 * 109.47173 * 301.76174 * 5 2 1 34 34 H 1.09004 * 109.47180 * 181.76809 * 5 2 1 35 35 H 0.97002 * 119.99848 * 0.92542 * 11 10 8 36 36 H 1.08997 * 109.47135 * 304.09459 * 17 16 6 37 37 H 1.08997 * 109.46743 * 64.09506 * 17 16 6 38 38 H 1.08997 * 109.47168 * 300.00007 * 18 17 16 39 39 H 1.08997 * 109.47184 * 59.99856 * 18 17 16 40 40 H 1.07993 * 122.53978 * 359.97438 * 20 19 18 41 41 H 1.07990 * 125.20329 * 180.02562 * 21 20 19 42 42 H 1.07999 * 125.20026 * 0.03265 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9586 -0.6925 -1.1994 5 6 1.9586 -0.6925 1.1995 6 6 1.4853 -2.1472 1.1775 7 1 1.9269 -2.6858 2.0160 8 6 -0.0170 -2.1884 1.2893 9 1 -0.6096 -2.5622 0.4675 10 6 -0.6349 -1.7489 2.4408 11 7 0.0853 -1.4434 3.4980 12 14 -2.4950 -1.5872 2.4994 13 1 -2.9074 -1.0984 3.8396 14 1 -2.9409 -0.6224 1.4623 15 1 -3.1153 -2.9118 2.2426 16 8 1.8886 -2.7610 -0.0484 17 6 3.1129 -3.4924 0.0431 18 6 3.4982 -4.0170 -1.3415 19 6 4.7889 -4.7889 -1.2449 20 6 4.8256 -6.1496 -0.9933 21 6 6.0491 -6.6785 -0.9400 22 16 7.2476 -5.4217 -1.2184 23 6 5.9822 -4.2138 -1.4011 24 1 -0.3634 0.1872 1.0105 25 1 -0.3634 0.7815 -0.6673 26 1 -0.3633 -0.9687 -0.3431 27 1 3.0486 1.3850 0.0005 28 1 1.5953 1.8988 -0.8899 29 1 1.5953 1.8988 0.8900 30 1 1.3289 -1.5590 -1.4012 31 1 1.9248 -0.0127 -2.0508 32 1 2.9856 -1.0196 -1.0363 33 1 1.5697 -0.1973 2.0892 34 1 3.0482 -0.6652 1.2155 35 1 1.0521 -1.5145 3.4633 36 1 3.9005 -2.8374 0.4156 37 1 2.9845 -4.3315 0.7268 38 1 2.7106 -4.6720 -1.7140 39 1 3.6265 -3.1779 -2.0253 40 1 3.9315 -6.7384 -0.8510 41 1 6.2698 -7.7193 -0.7550 42 1 6.1464 -3.1663 -1.6064 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224534847.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:43 Heat of formation + Delta-G solvation = 90.732201 kcal Electronic energy + Delta-G solvation = -21549.885094 eV Core-core repulsion = 18547.530797 eV Total energy + Delta-G solvation = -3002.354296 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.143 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.29563 -39.68658 -38.46851 -35.45138 -32.98618 -31.05360 -30.27921 -29.99088 -29.51068 -27.43110 -25.26729 -24.64195 -23.21861 -23.07397 -19.78795 -19.22121 -18.88603 -18.55009 -18.29512 -17.96764 -16.86354 -16.66353 -15.99897 -15.63565 -15.08897 -14.94871 -14.81780 -14.40011 -14.31384 -14.11668 -14.02304 -13.97782 -13.75721 -13.59632 -13.42247 -13.26455 -13.14169 -12.84346 -12.60858 -12.39020 -12.08161 -11.86917 -11.71464 -11.44390 -10.85674 -10.22157 -10.08567 -9.82292 -9.39631 -8.21209 -6.04493 -0.01357 0.51015 0.66367 0.99148 1.62680 2.01534 2.21221 2.33211 2.42809 2.50775 2.53507 2.78205 3.02100 3.28179 3.31793 3.45644 3.64544 3.70025 3.74759 3.77477 3.88534 3.91147 3.96537 4.04632 4.07359 4.19262 4.28032 4.33426 4.37990 4.45621 4.50311 4.59089 4.77211 4.84633 4.88407 5.02433 5.05734 5.37580 5.46358 5.89210 6.17696 6.70131 6.89451 7.60328 9.11124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.247 5.247 3 C -0.043 4.043 4 C -0.029 4.029 5 C -0.028 4.028 6 C 0.186 3.814 7 H 0.054 0.946 8 C -0.627 4.627 9 H 0.078 0.922 10 C 0.033 3.967 11 N -0.874 5.874 12 Si 1.056 2.944 13 H -0.273 1.273 14 H -0.278 1.278 15 H -0.276 1.276 16 O -0.384 6.384 17 C 0.061 3.939 18 C -0.057 4.057 19 C -0.099 4.099 20 C -0.132 4.132 21 C -0.207 4.207 22 S 0.099 5.901 23 C -0.214 4.214 24 H 0.118 0.882 25 H 0.083 0.917 26 H 0.147 0.853 27 H 0.107 0.893 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.143 0.857 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.128 0.872 34 H 0.092 0.908 35 H 0.271 0.729 36 H 0.041 0.959 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.143 0.857 41 H 0.166 0.834 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.079 7.118 -9.762 13.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 N 0.095 4.905 3 C -0.186 4.186 4 C -0.170 4.170 5 C -0.150 4.150 6 C 0.129 3.871 7 H 0.072 0.928 8 C -0.664 4.664 9 H 0.096 0.904 10 C -0.176 4.176 11 N -0.506 5.506 12 Si 0.880 3.120 13 H -0.197 1.197 14 H -0.204 1.204 15 H -0.201 1.201 16 O -0.304 6.304 17 C -0.016 4.016 18 C -0.097 4.097 19 C -0.112 4.112 20 C -0.162 4.162 21 C -0.343 4.343 22 S 0.363 5.637 23 C -0.350 4.350 24 H 0.137 0.863 25 H 0.101 0.899 26 H 0.165 0.835 27 H 0.126 0.874 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.161 0.839 31 H 0.111 0.889 32 H 0.120 0.880 33 H 0.146 0.854 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.160 0.840 41 H 0.184 0.816 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.346 7.560 -8.972 13.339 hybrid contribution 0.197 -0.611 -0.429 0.772 sum 6.544 6.949 -9.402 13.398 Atomic orbital electron populations 1.24679 0.75316 1.08828 1.08195 1.45649 1.16430 1.13022 1.15377 1.24057 1.04405 0.81925 1.08166 1.24338 1.05519 1.01401 0.85768 1.24767 1.00730 1.02175 0.87373 1.20184 0.97547 0.84554 0.84855 0.92805 1.21924 0.88674 1.50007 1.05750 0.90377 1.26054 1.07795 0.93008 0.90721 1.71043 1.08208 1.42477 1.28842 0.83632 0.72531 0.78160 0.77679 1.19717 1.20384 1.20095 1.87924 1.40115 1.68348 1.33972 1.22500 0.86545 0.95510 0.97013 1.20198 0.93619 0.99346 0.96523 1.18764 0.94869 0.94011 1.03588 1.20162 0.98283 0.94510 1.03267 1.25688 0.95880 1.03359 1.09359 1.84459 1.10268 0.99286 1.69717 1.25480 0.95369 1.03300 1.10840 0.86329 0.89860 0.83486 0.87421 0.86982 0.86863 0.83888 0.88931 0.87985 0.85390 0.89018 0.91758 0.94076 0.92736 0.89683 0.90715 0.83961 0.81644 0.82061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 0.16 6.93 60.06 0.42 0.58 16 2 N -0.25 1.88 0.05 -395.63 -0.02 1.86 16 3 C -0.04 0.46 7.86 60.07 0.47 0.93 16 4 C -0.03 0.25 7.00 60.06 0.42 0.67 16 5 C -0.03 0.11 3.86 -3.82 -0.01 0.09 16 6 C 0.19 0.17 2.04 -27.89 -0.06 0.11 16 7 H 0.05 0.22 7.13 -51.93 -0.37 -0.15 16 8 C -0.63 -2.73 5.33 -34.44 -0.18 -2.91 16 9 H 0.08 0.40 7.00 -52.49 -0.37 0.04 16 10 C 0.03 0.23 3.91 -17.82 -0.07 0.16 16 11 N -0.87 -8.02 12.97 55.43 0.72 -7.30 16 12 Si 1.06 6.48 29.54 -169.99 -5.02 1.46 16 13 H -0.27 -2.28 7.11 56.52 0.40 -1.87 16 14 H -0.28 -1.09 7.11 56.52 0.40 -0.68 16 15 H -0.28 -2.01 7.11 56.52 0.40 -1.61 16 16 O -0.38 0.39 5.67 -35.23 -0.20 0.19 16 17 C 0.06 -0.09 5.23 37.16 0.19 0.11 16 18 C -0.06 0.13 5.84 -27.88 -0.16 -0.03 16 19 C -0.10 0.07 5.06 -106.25 -0.54 -0.46 16 20 C -0.13 -0.01 9.98 -41.20 -0.41 -0.42 16 21 C -0.21 0.01 11.23 29.04 0.33 0.34 16 22 S 0.10 -0.03 23.34 -107.50 -2.51 -2.53 16 23 C -0.21 0.24 10.98 29.04 0.32 0.55 16 24 H 0.12 -0.30 5.72 -51.93 -0.30 -0.60 16 25 H 0.08 -0.70 7.80 -51.93 -0.41 -1.11 16 26 H 0.15 -0.49 4.83 -51.93 -0.25 -0.74 16 27 H 0.11 -1.26 8.14 -51.93 -0.42 -1.68 16 28 H 0.11 -1.39 7.87 -51.93 -0.41 -1.79 16 29 H 0.11 -1.15 8.14 -51.93 -0.42 -1.57 16 30 H 0.14 -0.88 5.45 -51.93 -0.28 -1.16 16 31 H 0.09 -1.01 7.78 -51.93 -0.40 -1.42 16 32 H 0.10 -0.87 6.95 -51.93 -0.36 -1.23 16 33 H 0.13 -0.20 6.12 -51.93 -0.32 -0.52 16 34 H 0.09 -0.53 8.04 -51.93 -0.42 -0.95 16 35 H 0.27 2.16 6.06 -40.82 -0.25 1.91 16 36 H 0.04 -0.10 8.14 -51.93 -0.42 -0.52 16 37 H 0.05 0.05 8.14 -51.93 -0.42 -0.37 16 38 H 0.08 -0.13 8.13 -51.93 -0.42 -0.55 16 39 H 0.07 -0.31 8.12 -51.93 -0.42 -0.73 16 40 H 0.14 -0.12 8.06 -52.49 -0.42 -0.54 16 41 H 0.17 -0.27 8.06 -52.49 -0.42 -0.69 16 42 H 0.16 -0.54 8.06 -52.49 -0.42 -0.96 16 LS Contribution 331.84 15.07 5.00 5.00 Total: 0.00 -13.09 331.84 -8.05 -21.13 By element: Atomic # 1 Polarization: -12.79 SS G_CDS: -6.73 Total: -19.52 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 0.71 Total: -0.29 kcal Atomic # 7 Polarization: -6.14 SS G_CDS: 0.70 Total: -5.44 kcal Atomic # 8 Polarization: 0.39 SS G_CDS: -0.20 Total: 0.19 kcal Atomic # 14 Polarization: 6.48 SS G_CDS: -5.02 Total: 1.46 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -2.51 Total: -2.53 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -13.09 -8.05 -21.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224534847.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.865 kcal (2) G-P(sol) polarization free energy of solvation -13.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds