Wall clock time and date at job start Tue Mar 31 2020 06:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46902 * 109.47160 * 2 1 4 4 C 1.46894 * 109.47283 * 239.99908 * 2 1 3 5 5 C 1.46905 * 109.47088 * 120.00081 * 2 1 3 6 6 C 1.52995 * 109.47397 * 61.76396 * 5 2 1 7 7 H 1.09000 * 109.47258 * 174.59146 * 6 5 2 8 8 C 1.50698 * 109.47222 * 294.59720 * 6 5 2 9 9 H 1.07994 * 120.00238 * 114.84913 * 8 6 5 10 10 C 1.37875 * 120.00086 * 294.84817 * 8 6 5 11 11 N 1.31523 * 119.99670 * 351.94617 * 10 8 6 12 12 Si 1.86799 * 120.00393 * 171.94460 * 10 8 6 13 13 H 1.48500 * 109.47267 * 180.02562 * 12 10 8 14 14 H 1.48504 * 109.46951 * 300.00065 * 12 10 8 15 15 H 1.48499 * 109.47041 * 60.00319 * 12 10 8 16 16 O 1.42903 * 109.47032 * 54.59321 * 6 5 2 17 17 C 1.42904 * 113.99873 * 95.67032 * 16 6 5 18 18 C 1.53000 * 109.47060 * 184.09432 * 17 16 6 19 19 C 1.50700 * 109.46998 * 180.02562 * 18 17 16 20 20 C 1.38431 * 122.53572 * 90.00107 * 19 18 17 21 21 C 1.33394 * 114.91786 * 179.97438 * 20 19 18 22 22 S 1.75884 * 109.59303 * 359.97438 * 21 20 19 23 23 C 1.33387 * 122.54252 * 269.70591 * 19 18 17 24 24 H 1.09000 * 109.47232 * 280.49535 * 1 2 3 25 25 H 1.08996 * 109.47370 * 40.49522 * 1 2 3 26 26 H 1.09000 * 109.46858 * 160.49526 * 1 2 3 27 27 H 1.08999 * 109.46916 * 179.97438 * 3 2 1 28 28 H 1.08993 * 109.47055 * 300.00055 * 3 2 1 29 29 H 1.09002 * 109.46741 * 60.00212 * 3 2 1 30 30 H 1.09002 * 109.47314 * 320.79916 * 4 2 1 31 31 H 1.09003 * 109.47513 * 80.79779 * 4 2 1 32 32 H 1.09005 * 109.47389 * 200.79503 * 4 2 1 33 33 H 1.09005 * 109.47173 * 301.76174 * 5 2 1 34 34 H 1.09004 * 109.47180 * 181.76809 * 5 2 1 35 35 H 0.97002 * 119.99848 * 0.92542 * 11 10 8 36 36 H 1.08997 * 109.47135 * 304.09459 * 17 16 6 37 37 H 1.08997 * 109.46743 * 64.09506 * 17 16 6 38 38 H 1.08997 * 109.47168 * 300.00007 * 18 17 16 39 39 H 1.08997 * 109.47184 * 59.99856 * 18 17 16 40 40 H 1.07993 * 122.53978 * 359.97438 * 20 19 18 41 41 H 1.07990 * 125.20329 * 180.02562 * 21 20 19 42 42 H 1.07999 * 125.20026 * 0.03265 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9586 -0.6925 -1.1994 5 6 1.9586 -0.6925 1.1995 6 6 1.4853 -2.1472 1.1775 7 1 1.9269 -2.6858 2.0160 8 6 -0.0170 -2.1884 1.2893 9 1 -0.6096 -2.5622 0.4675 10 6 -0.6349 -1.7489 2.4408 11 7 0.0853 -1.4434 3.4980 12 14 -2.4950 -1.5872 2.4994 13 1 -2.9074 -1.0984 3.8396 14 1 -2.9409 -0.6224 1.4623 15 1 -3.1153 -2.9118 2.2426 16 8 1.8886 -2.7610 -0.0484 17 6 3.1129 -3.4924 0.0431 18 6 3.4982 -4.0170 -1.3415 19 6 4.7889 -4.7889 -1.2449 20 6 4.8256 -6.1496 -0.9933 21 6 6.0491 -6.6785 -0.9400 22 16 7.2476 -5.4217 -1.2184 23 6 5.9822 -4.2138 -1.4011 24 1 -0.3634 0.1872 1.0105 25 1 -0.3634 0.7815 -0.6673 26 1 -0.3633 -0.9687 -0.3431 27 1 3.0486 1.3850 0.0005 28 1 1.5953 1.8988 -0.8899 29 1 1.5953 1.8988 0.8900 30 1 1.3289 -1.5590 -1.4012 31 1 1.9248 -0.0127 -2.0508 32 1 2.9856 -1.0196 -1.0363 33 1 1.5697 -0.1973 2.0892 34 1 3.0482 -0.6652 1.2155 35 1 1.0521 -1.5145 3.4633 36 1 3.9005 -2.8374 0.4156 37 1 2.9845 -4.3315 0.7268 38 1 2.7106 -4.6720 -1.7140 39 1 3.6265 -3.1779 -2.0253 40 1 3.9315 -6.7384 -0.8510 41 1 6.2698 -7.7193 -0.7550 42 1 6.1464 -3.1663 -1.6064 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224534847.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:43 Heat of formation + Delta-G solvation = 91.556245 kcal Electronic energy + Delta-G solvation = -21549.849361 eV Core-core repulsion = 18547.530797 eV Total energy + Delta-G solvation = -3002.318563 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.143 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.81908 -39.58516 -38.39336 -35.74283 -32.95634 -30.96265 -29.75600 -29.43199 -29.29452 -27.40233 -25.22654 -24.45811 -23.12044 -22.89873 -19.78003 -19.40810 -18.63698 -18.38992 -17.81655 -17.48648 -16.68432 -16.48698 -15.97117 -15.79326 -15.35662 -14.65621 -14.46388 -14.33293 -13.99075 -13.91725 -13.87027 -13.42396 -13.34965 -13.21774 -13.02657 -12.98874 -12.93995 -12.80261 -12.54502 -12.42321 -12.24002 -12.05640 -11.86683 -11.64971 -11.09527 -10.56286 -10.29052 -9.75632 -9.34813 -8.73197 -6.50378 0.05773 0.73856 1.05749 1.09362 1.49652 1.64981 1.68508 1.75156 2.40402 2.76874 2.92463 3.06609 3.19524 3.21293 3.90664 3.96061 3.99416 4.11818 4.16535 4.23322 4.25591 4.31860 4.40447 4.42623 4.47909 4.57007 4.61541 4.63941 4.69564 4.74941 4.76308 4.80425 4.86574 5.05800 5.11538 5.17294 5.24155 5.47128 5.54902 5.63986 5.89737 6.39125 6.47751 7.15840 8.62992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.239 5.239 3 C -0.046 4.046 4 C -0.033 4.033 5 C -0.010 4.010 6 C 0.186 3.814 7 H 0.016 0.984 8 C -0.602 4.602 9 H 0.069 0.931 10 C 0.010 3.990 11 N -0.922 5.922 12 Si 1.072 2.928 13 H -0.307 1.307 14 H -0.238 1.238 15 H -0.295 1.295 16 O -0.374 6.374 17 C 0.065 3.935 18 C -0.047 4.047 19 C -0.110 4.110 20 C -0.147 4.147 21 C -0.221 4.221 22 S 0.083 5.917 23 C -0.207 4.207 24 H 0.088 0.912 25 H 0.124 0.876 26 H 0.122 0.878 27 H 0.127 0.873 28 H 0.140 0.860 29 H 0.106 0.894 30 H 0.118 0.882 31 H 0.131 0.869 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.122 0.878 35 H 0.270 0.730 36 H 0.059 0.941 37 H 0.022 0.978 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.143 0.857 41 H 0.174 0.826 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.327 9.283 -12.342 17.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 N 0.104 4.896 3 C -0.187 4.187 4 C -0.173 4.173 5 C -0.133 4.133 6 C 0.129 3.871 7 H 0.034 0.966 8 C -0.640 4.640 9 H 0.087 0.913 10 C -0.193 4.193 11 N -0.558 5.558 12 Si 0.898 3.102 13 H -0.234 1.234 14 H -0.162 1.162 15 H -0.222 1.222 16 O -0.294 6.294 17 C -0.012 4.012 18 C -0.086 4.086 19 C -0.123 4.123 20 C -0.177 4.177 21 C -0.356 4.356 22 S 0.347 5.653 23 C -0.343 4.343 24 H 0.106 0.894 25 H 0.142 0.858 26 H 0.140 0.860 27 H 0.145 0.855 28 H 0.158 0.842 29 H 0.124 0.876 30 H 0.136 0.864 31 H 0.149 0.851 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.140 0.860 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.041 0.959 38 H 0.093 0.907 39 H 0.122 0.878 40 H 0.160 0.840 41 H 0.191 0.809 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 7.583 9.739 -11.601 16.939 hybrid contribution -0.197 -1.367 0.300 1.413 sum 7.386 8.372 -11.301 15.886 Atomic orbital electron populations 1.24449 0.76751 1.08848 1.07144 1.45485 1.15290 1.14642 1.14170 1.24279 1.05658 0.79435 1.09285 1.24392 1.05099 1.01618 0.86208 1.24195 1.02258 0.98252 0.88589 1.19906 0.95290 0.87529 0.84422 0.96613 1.22062 0.90819 1.46925 1.04180 0.91251 1.26214 1.08158 0.93756 0.91193 1.71054 1.08333 1.46224 1.30192 0.83454 0.72180 0.77752 0.76811 1.23424 1.16186 1.22187 1.87975 1.40726 1.68377 1.32326 1.22480 0.86731 0.94787 0.97237 1.20131 0.92491 0.99893 0.96126 1.18910 0.95718 0.93759 1.03898 1.20398 0.98423 0.95406 1.03493 1.25881 0.96021 1.04031 1.09712 1.84489 1.10920 0.99906 1.69979 1.25792 0.94491 1.04236 1.09750 0.89364 0.85829 0.85969 0.85486 0.84159 0.87555 0.86377 0.85111 0.87206 0.87519 0.85981 0.91866 0.92248 0.95915 0.90694 0.87822 0.83968 0.80878 0.79395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 0.36 6.93 127.69 0.88 1.24 16 2 N -0.24 4.08 0.05 ******* -0.07 4.01 16 3 C -0.05 1.13 7.86 127.69 1.00 2.13 16 4 C -0.03 0.65 7.00 127.69 0.89 1.54 16 5 C -0.01 0.08 3.86 86.30 0.33 0.41 16 6 C 0.19 0.55 2.04 29.85 0.06 0.61 16 7 H 0.02 0.17 7.13 -2.39 -0.02 0.16 16 8 C -0.60 -6.37 5.33 25.60 0.14 -6.23 16 9 H 0.07 0.83 7.00 -2.91 -0.02 0.81 16 10 C 0.01 0.17 3.91 84.65 0.33 0.50 16 11 N -0.92 -19.77 12.97 21.45 0.28 -19.49 16 12 Si 1.07 15.36 29.54 68.60 2.03 17.39 16 13 H -0.31 -6.17 7.11 99.48 0.71 -5.46 16 14 H -0.24 -1.77 7.11 99.48 0.71 -1.06 16 15 H -0.30 -5.05 7.11 99.48 0.71 -4.34 16 16 O -0.37 0.73 5.67 -148.98 -0.84 -0.12 16 17 C 0.06 -0.19 5.23 71.98 0.38 0.19 16 18 C -0.05 0.26 5.84 29.85 0.17 0.44 16 19 C -0.11 0.23 5.06 -20.92 -0.11 0.12 16 20 C -0.15 -0.12 9.98 21.22 0.21 0.10 16 21 C -0.22 -0.13 11.23 66.72 0.75 0.62 16 22 S 0.08 -0.05 23.34 -56.49 -1.32 -1.37 16 23 C -0.21 0.75 10.98 66.72 0.73 1.48 16 24 H 0.09 -0.39 5.72 -2.39 -0.01 -0.41 16 25 H 0.12 -2.42 7.80 -2.39 -0.02 -2.44 16 26 H 0.12 -0.81 4.83 -2.39 -0.01 -0.82 16 27 H 0.13 -3.51 8.14 -2.39 -0.02 -3.53 16 28 H 0.14 -4.13 7.87 -2.39 -0.02 -4.15 16 29 H 0.11 -2.36 8.14 -2.39 -0.02 -2.38 16 30 H 0.12 -1.64 5.45 -2.39 -0.01 -1.65 16 31 H 0.13 -3.49 7.78 -2.39 -0.02 -3.51 16 32 H 0.11 -2.28 6.95 -2.38 -0.02 -2.30 16 33 H 0.11 -0.23 6.12 -2.38 -0.01 -0.24 16 34 H 0.12 -1.67 8.04 -2.38 -0.02 -1.69 16 35 H 0.27 5.17 6.06 -92.71 -0.56 4.61 16 36 H 0.06 -0.37 8.14 -2.39 -0.02 -0.39 16 37 H 0.02 0.08 8.14 -2.39 -0.02 0.07 16 38 H 0.07 -0.24 8.13 -2.39 -0.02 -0.26 16 39 H 0.10 -1.16 8.12 -2.39 -0.02 -1.18 16 40 H 0.14 -0.02 8.06 -2.91 -0.02 -0.05 16 41 H 0.17 -0.39 8.06 -2.92 -0.02 -0.41 16 42 H 0.19 -1.82 8.06 -2.91 -0.02 -1.84 16 Total: 0.00 -35.94 331.84 7.05 -28.90 By element: Atomic # 1 Polarization: -33.66 SS G_CDS: 1.19 Total: -32.47 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 5.78 Total: 3.15 kcal Atomic # 7 Polarization: -15.70 SS G_CDS: 0.21 Total: -15.49 kcal Atomic # 8 Polarization: 0.73 SS G_CDS: -0.84 Total: -0.12 kcal Atomic # 14 Polarization: 15.36 SS G_CDS: 2.03 Total: 17.39 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -1.32 Total: -1.37 kcal Total: -35.94 7.05 -28.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224534847.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.455 kcal (2) G-P(sol) polarization free energy of solvation -35.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds