Wall clock time and date at job start Tue Mar 31 2020 06:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 109.47182 * 2 1 4 4 C 1.46902 * 109.46750 * 240.00330 * 2 1 3 5 5 C 1.46898 * 109.47432 * 120.00927 * 2 1 3 6 6 C 1.53000 * 109.47549 * 63.90079 * 5 2 1 7 7 H 1.08997 * 109.46517 * 54.06464 * 6 5 2 8 8 C 1.50697 * 109.46970 * 174.05748 * 6 5 2 9 9 H 1.07997 * 120.00013 * 245.22833 * 8 6 5 10 10 C 1.37877 * 119.99910 * 65.22822 * 8 6 5 11 11 N 1.31520 * 120.00092 * 6.68494 * 10 8 6 12 12 Si 1.86799 * 120.00109 * 186.68118 * 10 8 6 13 13 H 1.48491 * 109.47292 * 84.98880 * 12 10 8 14 14 H 1.48507 * 109.46885 * 204.98859 * 12 10 8 15 15 H 1.48503 * 109.46980 * 324.98607 * 12 10 8 16 16 O 1.42896 * 109.47271 * 294.06382 * 6 5 2 17 17 C 1.42900 * 114.00080 * 149.99560 * 16 6 5 18 18 C 1.52998 * 109.47027 * 179.97438 * 17 16 6 19 19 C 1.50698 * 109.47250 * 180.02562 * 18 17 16 20 20 C 1.33390 * 125.20256 * 89.99940 * 19 18 17 21 21 C 1.38422 * 114.92220 * 179.97438 * 20 19 18 22 22 C 1.33386 * 114.92248 * 0.02562 * 21 20 19 23 23 S 1.75881 * 125.20512 * 269.70433 * 19 18 17 24 24 H 1.09008 * 109.46479 * 291.67098 * 1 2 3 25 25 H 1.08995 * 109.47171 * 51.66966 * 1 2 3 26 26 H 1.08997 * 109.47305 * 171.67897 * 1 2 3 27 27 H 1.09009 * 109.46912 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47587 * 300.00165 * 3 2 1 29 29 H 1.08999 * 109.47217 * 60.01012 * 3 2 1 30 30 H 1.09005 * 109.47488 * 300.00143 * 4 2 1 31 31 H 1.09001 * 109.46977 * 59.99590 * 4 2 1 32 32 H 1.08998 * 109.47517 * 179.97438 * 4 2 1 33 33 H 1.09003 * 109.46671 * 303.89893 * 5 2 1 34 34 H 1.08998 * 109.47265 * 183.90680 * 5 2 1 35 35 H 0.96999 * 120.00208 * 180.02562 * 11 10 8 36 36 H 1.08996 * 109.47442 * 300.00354 * 17 16 6 37 37 H 1.08999 * 109.46551 * 60.00372 * 17 16 6 38 38 H 1.08996 * 109.47754 * 300.00720 * 18 17 16 39 39 H 1.08999 * 109.47072 * 60.00629 * 18 17 16 40 40 H 1.08000 * 122.53810 * 359.96703 * 20 19 18 41 41 H 1.08002 * 122.53674 * 180.02562 * 21 20 19 42 42 H 1.07997 * 125.20885 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9586 -0.6925 -1.1995 5 6 1.9587 -0.6927 1.1993 6 6 1.5305 -2.1607 1.1511 7 1 1.8604 -2.6046 0.2118 8 6 2.1541 -2.9040 2.3042 9 1 2.8792 -3.6819 2.1164 10 6 1.7988 -2.5907 3.5991 11 7 0.8231 -1.7384 3.8254 12 14 2.7033 -3.3770 5.0320 13 1 3.9307 -2.5966 5.3307 14 1 1.8216 -3.3895 6.2269 15 1 3.0763 -4.7700 4.6774 16 8 0.1071 -2.2450 1.2438 17 6 -0.4537 -3.3720 0.5674 18 6 -1.9747 -3.3611 0.7331 19 6 -2.5661 -4.5499 0.0203 20 6 -2.7730 -5.7492 0.5664 21 6 -3.3296 -6.6891 -0.2838 22 6 -3.5742 -6.2533 -1.5206 23 16 -3.0959 -4.5662 -1.6567 24 1 -0.3632 0.3795 0.9551 25 1 -0.3633 0.6373 -0.8061 26 1 -0.3634 -1.0168 -0.1487 27 1 3.0488 1.3849 -0.0005 28 1 1.5954 1.8989 -0.8900 29 1 1.5955 1.8988 0.8901 30 1 1.5952 -1.7202 -1.1996 31 1 1.5951 -0.1786 -2.0894 32 1 3.0486 -0.6921 -1.1999 33 1 1.5394 -0.2209 2.0880 34 1 3.0465 -0.6324 1.2350 35 1 0.5734 -1.5177 4.7364 36 1 -0.2029 -3.3217 -0.4921 37 1 -0.0488 -4.2898 0.9935 38 1 -2.2253 -3.4116 1.7926 39 1 -2.3800 -2.4433 0.3073 40 1 -2.5250 -5.9701 1.5940 41 1 -3.5491 -7.6988 0.0304 42 1 -4.0047 -6.8444 -2.3153 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224785894.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:40 Heat of formation + Delta-G solvation = 89.291770 kcal Electronic energy + Delta-G solvation = -21406.559869 eV Core-core repulsion = 18404.143111 eV Total energy + Delta-G solvation = -3002.416758 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.143 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.24448 -39.00365 -38.16906 -34.76672 -33.32231 -31.37756 -30.38195 -30.16423 -28.49023 -27.57146 -25.09045 -24.69329 -22.87113 -22.55506 -20.06235 -18.97527 -18.67081 -18.20398 -18.10050 -17.59787 -16.78705 -16.40455 -16.01649 -15.74267 -15.18920 -14.84081 -14.69923 -14.35042 -14.12086 -14.04091 -13.93967 -13.74508 -13.67144 -13.57126 -13.42734 -13.12444 -12.95416 -12.60851 -12.32829 -12.14625 -12.08179 -11.84326 -11.56750 -11.19326 -10.99164 -10.08985 -9.68434 -9.47255 -9.30690 -7.59987 -5.82324 0.15654 0.35823 0.78606 1.14784 1.93755 2.14734 2.29617 2.32712 2.33512 2.37631 2.41262 3.05739 3.11556 3.16119 3.24108 3.44213 3.57185 3.68525 3.72408 3.76965 3.77466 3.89002 4.06469 4.19024 4.20154 4.29498 4.33425 4.36942 4.48310 4.56723 4.71560 4.80059 4.88641 5.19346 5.24494 5.30035 5.39793 5.50908 5.68872 6.30594 6.37297 6.77143 7.34252 8.00169 9.40985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.270 5.270 3 C -0.041 4.041 4 C -0.045 4.045 5 C 0.000 4.000 6 C 0.202 3.798 7 H 0.031 0.969 8 C -0.572 4.572 9 H 0.071 0.929 10 C 0.092 3.908 11 N -0.848 5.848 12 Si 0.893 3.107 13 H -0.273 1.273 14 H -0.279 1.279 15 H -0.269 1.269 16 O -0.366 6.366 17 C 0.075 3.925 18 C -0.044 4.044 19 C -0.168 4.168 20 C -0.136 4.136 21 C -0.131 4.131 22 C -0.214 4.214 23 S 0.081 5.919 24 H 0.119 0.881 25 H 0.094 0.906 26 H 0.136 0.864 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.115 0.885 30 H 0.119 0.881 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.143 0.857 34 H 0.117 0.883 35 H 0.273 0.727 36 H 0.027 0.973 37 H 0.057 0.943 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.601 9.440 -12.968 16.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 N 0.071 4.929 3 C -0.183 4.183 4 C -0.187 4.187 5 C -0.118 4.118 6 C 0.145 3.855 7 H 0.048 0.952 8 C -0.609 4.609 9 H 0.089 0.911 10 C -0.118 4.118 11 N -0.480 5.480 12 Si 0.719 3.281 13 H -0.199 1.199 14 H -0.204 1.204 15 H -0.193 1.193 16 O -0.286 6.286 17 C -0.003 4.003 18 C -0.084 4.084 19 C -0.285 4.285 20 C -0.166 4.166 21 C -0.161 4.161 22 C -0.349 4.349 23 S 0.344 5.656 24 H 0.137 0.863 25 H 0.113 0.887 26 H 0.154 0.846 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.134 0.866 30 H 0.137 0.863 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.161 0.839 34 H 0.135 0.865 35 H 0.083 0.917 36 H 0.045 0.955 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.160 0.840 41 H 0.158 0.842 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.327 10.735 -13.886 17.555 hybrid contribution 0.555 -1.755 1.906 2.650 sum 0.882 8.980 -11.980 14.998 Atomic orbital electron populations 1.24360 0.76296 1.10094 1.07473 1.46385 1.15742 1.14199 1.16579 1.24003 1.04833 0.81490 1.08017 1.24039 1.04897 1.02565 0.87173 1.24890 1.02796 0.98169 0.85975 1.19896 0.80702 0.87921 0.96977 0.95176 1.21203 1.27495 1.22018 0.90174 0.91090 1.24998 0.93387 0.94083 0.99375 1.69877 1.24213 1.31675 1.22280 0.86539 0.79854 0.80484 0.81181 1.19862 1.20441 1.19321 1.88011 1.21707 1.43508 1.75391 1.22170 0.92027 0.92161 0.93945 1.19991 0.94093 0.93183 1.01100 1.24386 1.07547 0.99677 0.96895 1.20248 1.02166 0.92337 1.01812 1.20240 1.01623 1.01250 0.93009 1.25592 1.09652 0.98019 1.01683 1.84138 1.61338 1.09753 1.10393 0.86253 0.88738 0.84576 0.86962 0.87342 0.86638 0.86289 0.87327 0.86775 0.83926 0.86508 0.91715 0.95468 0.92490 0.88716 0.90896 0.84016 0.84184 0.81938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.35 7.15 60.06 0.43 0.78 16 2 N -0.27 2.57 0.05 -395.62 -0.02 2.55 16 3 C -0.04 0.50 8.00 60.06 0.48 0.98 16 4 C -0.04 0.49 7.56 60.07 0.45 0.94 16 5 C 0.00 0.00 3.61 -3.82 -0.01 -0.01 16 6 C 0.20 0.22 1.85 -27.88 -0.05 0.17 16 7 H 0.03 -0.03 5.54 -51.93 -0.29 -0.31 16 8 C -0.57 -4.18 8.86 -34.44 -0.31 -4.48 16 9 H 0.07 0.62 7.82 -52.49 -0.41 0.21 16 10 C 0.09 0.85 5.23 -17.82 -0.09 0.75 16 11 N -0.85 -7.87 11.24 55.43 0.62 -7.25 16 12 Si 0.89 8.38 29.54 -169.99 -5.02 3.36 16 13 H -0.27 -2.60 7.11 56.52 0.40 -2.20 16 14 H -0.28 -2.98 7.11 56.52 0.40 -2.58 16 15 H -0.27 -2.79 7.11 56.52 0.40 -2.39 16 16 O -0.37 -0.64 5.92 -35.23 -0.21 -0.85 16 17 C 0.07 0.10 5.02 37.16 0.19 0.28 16 18 C -0.04 -0.04 6.08 -27.88 -0.17 -0.21 16 19 C -0.17 -0.28 5.76 -36.00 -0.21 -0.49 16 20 C -0.14 -0.31 10.05 -41.21 -0.41 -0.73 16 21 C -0.13 -0.21 10.18 -41.21 -0.42 -0.63 16 22 C -0.21 -0.22 11.23 29.04 0.33 0.10 16 23 S 0.08 0.05 23.33 -107.50 -2.51 -2.46 16 24 H 0.12 -0.81 7.97 -51.92 -0.41 -1.22 16 25 H 0.09 -1.08 8.02 -51.93 -0.42 -1.49 16 26 H 0.14 -0.86 4.92 -51.93 -0.26 -1.12 16 27 H 0.11 -1.43 8.12 -51.92 -0.42 -1.85 16 28 H 0.11 -1.51 8.08 -51.93 -0.42 -1.93 16 29 H 0.12 -1.32 8.14 -51.93 -0.42 -1.75 16 30 H 0.12 -1.08 5.89 -51.93 -0.31 -1.38 16 31 H 0.11 -1.43 8.14 -51.93 -0.42 -1.85 16 32 H 0.11 -1.34 8.14 -51.93 -0.42 -1.76 16 33 H 0.14 -0.11 6.78 -51.93 -0.35 -0.46 16 34 H 0.12 -0.53 8.10 -51.93 -0.42 -0.95 16 35 H 0.27 2.74 8.31 -40.82 -0.34 2.40 16 36 H 0.03 -0.03 8.08 -51.93 -0.42 -0.45 16 37 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 40 H 0.14 0.27 8.06 -52.49 -0.42 -0.15 16 41 H 0.14 0.01 8.06 -52.49 -0.42 -0.41 16 42 H 0.16 -0.14 8.06 -52.49 -0.42 -0.56 16 LS Contribution 342.66 15.07 5.16 5.16 Total: 0.00 -16.19 342.66 -8.83 -25.02 By element: Atomic # 1 Polarization: -15.94 SS G_CDS: -7.06 Total: -23.01 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 0.20 Total: -2.54 kcal Atomic # 7 Polarization: -5.30 SS G_CDS: 0.60 Total: -4.70 kcal Atomic # 8 Polarization: -0.64 SS G_CDS: -0.21 Total: -0.85 kcal Atomic # 14 Polarization: 8.38 SS G_CDS: -5.02 Total: 3.36 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -2.51 Total: -2.46 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -16.19 -8.83 -25.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224785894.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.315 kcal (2) G-P(sol) polarization free energy of solvation -16.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds