Wall clock time and date at job start Tue Mar 31 2020 06:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 109.47182 * 2 1 4 4 C 1.46902 * 109.46750 * 240.00330 * 2 1 3 5 5 C 1.46898 * 109.47432 * 120.00927 * 2 1 3 6 6 C 1.53000 * 109.47549 * 63.90079 * 5 2 1 7 7 H 1.08997 * 109.46517 * 54.06464 * 6 5 2 8 8 C 1.50697 * 109.46970 * 174.05748 * 6 5 2 9 9 H 1.07997 * 120.00013 * 245.22833 * 8 6 5 10 10 C 1.37877 * 119.99910 * 65.22822 * 8 6 5 11 11 N 1.31520 * 120.00092 * 6.68494 * 10 8 6 12 12 Si 1.86799 * 120.00109 * 186.68118 * 10 8 6 13 13 H 1.48491 * 109.47292 * 84.98880 * 12 10 8 14 14 H 1.48507 * 109.46885 * 204.98859 * 12 10 8 15 15 H 1.48503 * 109.46980 * 324.98607 * 12 10 8 16 16 O 1.42896 * 109.47271 * 294.06382 * 6 5 2 17 17 C 1.42900 * 114.00080 * 149.99560 * 16 6 5 18 18 C 1.52998 * 109.47027 * 179.97438 * 17 16 6 19 19 C 1.50698 * 109.47250 * 180.02562 * 18 17 16 20 20 C 1.33390 * 125.20256 * 89.99940 * 19 18 17 21 21 C 1.38422 * 114.92220 * 179.97438 * 20 19 18 22 22 C 1.33386 * 114.92248 * 0.02562 * 21 20 19 23 23 S 1.75881 * 125.20512 * 269.70433 * 19 18 17 24 24 H 1.09008 * 109.46479 * 291.67098 * 1 2 3 25 25 H 1.08995 * 109.47171 * 51.66966 * 1 2 3 26 26 H 1.08997 * 109.47305 * 171.67897 * 1 2 3 27 27 H 1.09009 * 109.46912 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47587 * 300.00165 * 3 2 1 29 29 H 1.08999 * 109.47217 * 60.01012 * 3 2 1 30 30 H 1.09005 * 109.47488 * 300.00143 * 4 2 1 31 31 H 1.09001 * 109.46977 * 59.99590 * 4 2 1 32 32 H 1.08998 * 109.47517 * 179.97438 * 4 2 1 33 33 H 1.09003 * 109.46671 * 303.89893 * 5 2 1 34 34 H 1.08998 * 109.47265 * 183.90680 * 5 2 1 35 35 H 0.96999 * 120.00208 * 180.02562 * 11 10 8 36 36 H 1.08996 * 109.47442 * 300.00354 * 17 16 6 37 37 H 1.08999 * 109.46551 * 60.00372 * 17 16 6 38 38 H 1.08996 * 109.47754 * 300.00720 * 18 17 16 39 39 H 1.08999 * 109.47072 * 60.00629 * 18 17 16 40 40 H 1.08000 * 122.53810 * 359.96703 * 20 19 18 41 41 H 1.08002 * 122.53674 * 180.02562 * 21 20 19 42 42 H 1.07997 * 125.20885 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9586 -0.6925 -1.1995 5 6 1.9587 -0.6927 1.1993 6 6 1.5305 -2.1607 1.1511 7 1 1.8604 -2.6046 0.2118 8 6 2.1541 -2.9040 2.3042 9 1 2.8792 -3.6819 2.1164 10 6 1.7988 -2.5907 3.5991 11 7 0.8231 -1.7384 3.8254 12 14 2.7033 -3.3770 5.0320 13 1 3.9307 -2.5966 5.3307 14 1 1.8216 -3.3895 6.2269 15 1 3.0763 -4.7700 4.6774 16 8 0.1071 -2.2450 1.2438 17 6 -0.4537 -3.3720 0.5674 18 6 -1.9747 -3.3611 0.7331 19 6 -2.5661 -4.5499 0.0203 20 6 -2.7730 -5.7492 0.5664 21 6 -3.3296 -6.6891 -0.2838 22 6 -3.5742 -6.2533 -1.5206 23 16 -3.0959 -4.5662 -1.6567 24 1 -0.3632 0.3795 0.9551 25 1 -0.3633 0.6373 -0.8061 26 1 -0.3634 -1.0168 -0.1487 27 1 3.0488 1.3849 -0.0005 28 1 1.5954 1.8989 -0.8900 29 1 1.5955 1.8988 0.8901 30 1 1.5952 -1.7202 -1.1996 31 1 1.5951 -0.1786 -2.0894 32 1 3.0486 -0.6921 -1.1999 33 1 1.5394 -0.2209 2.0880 34 1 3.0465 -0.6324 1.2350 35 1 0.5734 -1.5177 4.7364 36 1 -0.2029 -3.3217 -0.4921 37 1 -0.0488 -4.2898 0.9935 38 1 -2.2253 -3.4116 1.7926 39 1 -2.3800 -2.4433 0.3073 40 1 -2.5250 -5.9701 1.5940 41 1 -3.5491 -7.6988 0.0304 42 1 -4.0047 -6.8444 -2.3153 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224785894.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:39 Heat of formation + Delta-G solvation = 87.638800 kcal Electronic energy + Delta-G solvation = -21406.631547 eV Core-core repulsion = 18404.143111 eV Total energy + Delta-G solvation = -3002.488436 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.143 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.61259 -39.09283 -38.25262 -35.14074 -33.58283 -31.34287 -29.52140 -29.37393 -28.54309 -27.71967 -25.10135 -24.47704 -22.98310 -22.42445 -20.16932 -18.98220 -18.27630 -17.92046 -17.72471 -17.30794 -16.85008 -16.55775 -16.30563 -16.03440 -15.09851 -14.65173 -14.24431 -14.03765 -13.80530 -13.71533 -13.52544 -13.34722 -13.24707 -13.16818 -13.14201 -13.03680 -12.90445 -12.86908 -12.76787 -12.63258 -12.38537 -12.19314 -11.77220 -11.59024 -11.15692 -10.77556 -9.92156 -9.57846 -9.36125 -8.28154 -6.44906 0.05266 0.71257 1.05789 1.07164 1.32262 1.43788 1.49616 1.81018 2.32141 2.85744 2.92564 3.12159 3.18160 3.38284 3.96739 4.02781 4.11648 4.18390 4.25865 4.31741 4.33373 4.38012 4.44552 4.48304 4.52661 4.54217 4.66787 4.68779 4.71210 4.81439 4.82658 4.85410 5.03415 5.03903 5.17262 5.26849 5.33118 5.41187 5.57452 5.63046 5.95229 6.40692 6.89232 7.36292 8.69551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.258 5.258 3 C -0.043 4.043 4 C -0.051 4.051 5 C 0.021 3.979 6 C 0.195 3.805 7 H 0.054 0.946 8 C -0.576 4.576 9 H 0.049 0.951 10 C 0.074 3.926 11 N -0.855 5.855 12 Si 0.907 3.093 13 H -0.273 1.273 14 H -0.300 1.300 15 H -0.287 1.287 16 O -0.368 6.368 17 C 0.080 3.920 18 C -0.037 4.037 19 C -0.178 4.178 20 C -0.157 4.157 21 C -0.146 4.146 22 C -0.221 4.221 23 S 0.115 5.885 24 H 0.098 0.902 25 H 0.135 0.865 26 H 0.115 0.885 27 H 0.123 0.877 28 H 0.140 0.860 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.144 0.856 32 H 0.126 0.874 33 H 0.115 0.885 34 H 0.129 0.871 35 H 0.262 0.738 36 H 0.058 0.942 37 H 0.018 0.982 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.133 0.867 41 H 0.150 0.850 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.565 11.437 -16.411 20.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 N 0.085 4.915 3 C -0.183 4.183 4 C -0.192 4.192 5 C -0.100 4.100 6 C 0.139 3.861 7 H 0.072 0.928 8 C -0.614 4.614 9 H 0.067 0.933 10 C -0.134 4.134 11 N -0.490 5.490 12 Si 0.736 3.264 13 H -0.198 1.198 14 H -0.227 1.227 15 H -0.213 1.213 16 O -0.288 6.288 17 C 0.002 3.998 18 C -0.076 4.076 19 C -0.296 4.296 20 C -0.188 4.188 21 C -0.176 4.176 22 C -0.356 4.356 23 S 0.378 5.622 24 H 0.116 0.884 25 H 0.153 0.847 26 H 0.133 0.867 27 H 0.142 0.858 28 H 0.159 0.841 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.162 0.838 32 H 0.145 0.855 33 H 0.133 0.867 34 H 0.147 0.853 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.036 0.964 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.150 0.850 41 H 0.167 0.833 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 0.302 12.740 -17.340 21.520 hybrid contribution 0.583 -2.432 2.884 3.817 sum 0.886 10.309 -14.456 17.778 Atomic orbital electron populations 1.24304 0.76600 1.09456 1.07933 1.45966 1.15378 1.15376 1.14808 1.24194 1.05635 0.79261 1.09244 1.24248 1.05843 1.01815 0.87301 1.24021 1.03165 0.95357 0.87490 1.19937 0.79926 0.90753 0.95501 0.92815 1.21543 1.26332 1.21640 0.91866 0.93319 1.25101 0.93959 0.94681 0.99655 1.69918 1.25141 1.32906 1.21060 0.86417 0.79493 0.79393 0.81106 1.19806 1.22652 1.21264 1.88041 1.21712 1.43039 1.75992 1.22110 0.92026 0.90406 0.95265 1.19902 0.93969 0.94058 0.99702 1.24520 1.07470 0.99489 0.98094 1.20382 1.03235 0.93236 1.01898 1.20381 1.02175 1.01727 0.93366 1.25936 1.09125 0.98653 1.01885 1.83929 1.60480 1.09164 1.08582 0.88369 0.84659 0.86692 0.85837 0.84142 0.87437 0.88182 0.83795 0.85531 0.86695 0.85261 0.92853 0.92403 0.96382 0.91320 0.88647 0.84965 0.83287 0.80015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.78 7.15 127.69 0.91 1.70 16 2 N -0.26 5.42 0.05 ******* -0.07 5.35 16 3 C -0.04 1.15 8.00 127.69 1.02 2.18 16 4 C -0.05 1.27 7.56 127.69 0.96 2.23 16 5 C 0.02 -0.16 3.61 86.30 0.31 0.15 16 6 C 0.20 0.54 1.85 29.85 0.06 0.60 16 7 H 0.05 -0.12 5.54 -2.39 -0.01 -0.13 16 8 C -0.58 -9.59 8.86 25.60 0.23 -9.36 16 9 H 0.05 0.98 7.82 -2.91 -0.02 0.96 16 10 C 0.07 1.55 5.23 84.65 0.44 1.99 16 11 N -0.86 -18.09 11.24 21.45 0.24 -17.85 16 12 Si 0.91 19.75 29.54 68.60 2.03 21.78 16 13 H -0.27 -5.77 7.11 99.48 0.71 -5.06 16 14 H -0.30 -7.46 7.11 99.48 0.71 -6.76 16 15 H -0.29 -6.94 7.11 99.48 0.71 -6.24 16 16 O -0.37 -1.65 5.92 -148.98 -0.88 -2.53 16 17 C 0.08 0.29 5.02 71.98 0.36 0.65 16 18 C -0.04 -0.11 6.08 29.85 0.18 0.07 16 19 C -0.18 -0.72 5.76 24.59 0.14 -0.58 16 20 C -0.16 -1.00 10.05 21.22 0.21 -0.79 16 21 C -0.15 -0.58 10.18 21.22 0.22 -0.36 16 22 C -0.22 -0.34 11.23 66.72 0.75 0.41 16 23 S 0.12 0.04 23.33 -56.49 -1.32 -1.28 16 24 H 0.10 -1.34 7.97 -2.38 -0.02 -1.36 16 25 H 0.14 -3.60 8.02 -2.39 -0.02 -3.62 16 26 H 0.11 -1.60 4.92 -2.39 -0.01 -1.61 16 27 H 0.12 -3.52 8.12 -2.38 -0.02 -3.54 16 28 H 0.14 -4.56 8.08 -2.39 -0.02 -4.58 16 29 H 0.11 -2.63 8.14 -2.39 -0.02 -2.65 16 30 H 0.10 -2.03 5.89 -2.38 -0.01 -2.04 16 31 H 0.14 -4.48 8.14 -2.39 -0.02 -4.50 16 32 H 0.13 -3.38 8.14 -2.39 -0.02 -3.40 16 33 H 0.11 -0.07 6.78 -2.39 -0.02 -0.09 16 34 H 0.13 -1.30 8.10 -2.39 -0.02 -1.32 16 35 H 0.26 6.03 8.31 -92.71 -0.77 5.26 16 36 H 0.06 -0.15 8.08 -2.39 -0.02 -0.17 16 37 H 0.02 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.10 -0.16 8.14 -2.39 -0.02 -0.18 16 40 H 0.13 0.94 8.06 -2.91 -0.02 0.92 16 41 H 0.15 0.16 8.06 -2.91 -0.02 0.13 16 42 H 0.18 -0.55 8.06 -2.91 -0.02 -0.58 16 Total: 0.00 -42.22 342.66 6.77 -35.45 By element: Atomic # 1 Polarization: -40.77 SS G_CDS: 0.97 Total: -39.80 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 5.80 Total: -1.11 kcal Atomic # 7 Polarization: -12.67 SS G_CDS: 0.17 Total: -12.50 kcal Atomic # 8 Polarization: -1.65 SS G_CDS: -0.88 Total: -2.53 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: 2.03 Total: 21.78 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -1.32 Total: -1.28 kcal Total: -42.22 6.77 -35.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224785894.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.092 kcal (2) G-P(sol) polarization free energy of solvation -42.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds