Wall clock time and date at job start Tue Mar 31 2020 06:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 120.00121 * 2 1 4 4 H 1.09002 * 109.47024 * 119.99694 * 3 2 1 5 5 C 1.47197 * 109.47638 * 240.00357 * 3 2 1 6 6 C 3.45409 * 131.19008 * 303.78360 * 2 1 3 7 7 C 4.83386 * 130.21476 * 294.37451 * 2 1 3 8 8 C 1.52991 * 109.47228 * 156.39439 * 7 6 5 9 9 C 1.52998 * 109.47113 * 276.39243 * 7 6 5 10 10 C 1.53003 * 109.47102 * 36.39282 * 7 6 5 11 11 O 1.42902 * 109.47118 * 0.02562 * 3 2 1 12 12 C 1.35671 * 117.00246 * 87.08937 * 11 3 2 13 13 C 1.39315 * 119.81887 * 354.52190 * 12 11 3 14 14 C 1.36436 * 120.18361 * 180.02562 * 13 12 11 15 15 C 1.40829 * 119.81205 * 0.27907 * 14 13 12 16 16 C 1.41219 * 120.17881 * 179.72582 * 15 14 13 17 17 H 1.07995 * 119.99691 * 28.36462 * 16 15 14 18 18 C 1.39886 * 119.99678 * 208.36763 * 16 15 14 19 19 N 1.30881 * 120.00576 * 12.75666 * 18 16 15 20 20 Si 1.86805 * 119.99576 * 192.75722 * 18 16 15 21 21 H 1.48502 * 109.47229 * 0.02562 * 20 18 16 22 22 H 1.48510 * 109.46890 * 120.00174 * 20 18 16 23 23 H 1.48496 * 109.47407 * 239.99676 * 20 18 16 24 24 C 1.40834 * 119.64527 * 359.42583 * 15 14 13 25 25 C 1.36439 * 119.80593 * 0.57332 * 24 15 14 26 26 H 1.07995 * 120.00470 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.99744 * 359.97438 * 1 2 3 28 28 H 1.07993 * 119.99757 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.47692 * 59.99561 * 8 7 6 30 30 H 1.09002 * 109.47607 * 180.02562 * 8 7 6 31 31 H 1.09003 * 109.47063 * 300.00051 * 8 7 6 32 32 H 1.09000 * 109.47301 * 59.99961 * 9 7 6 33 33 H 1.09006 * 109.47333 * 179.97438 * 9 7 6 34 34 H 1.08999 * 109.47282 * 299.99962 * 9 7 6 35 35 H 1.08995 * 109.47195 * 60.00287 * 10 7 6 36 36 H 1.09001 * 109.46820 * 180.02562 * 10 7 6 37 37 H 1.09000 * 109.46979 * 299.99835 * 10 7 6 38 38 H 1.08002 * 119.90678 * 359.97438 * 13 12 11 39 39 H 1.07998 * 120.09341 * 180.02562 * 14 13 12 40 40 H 0.97000 * 120.00062 * 179.97438 * 19 18 16 41 41 H 1.07994 * 120.09978 * 180.29381 * 24 15 14 42 42 H 1.08006 * 119.90524 * 179.69479 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 2.6902 1.3628 0.8900 5 6 2.9098 1.3832 -1.2019 6 6 3.5847 1.4454 -2.1604 7 6 4.4310 1.5234 -3.3623 8 6 4.1333 2.8233 -4.1122 9 6 5.9045 1.4980 -2.9510 10 6 4.1350 0.3300 -4.2728 11 8 1.1350 2.3913 0.0006 12 6 0.6885 2.8193 1.2081 13 6 1.0487 2.1300 2.3640 14 6 0.6035 2.5537 3.5821 15 6 -0.2271 3.6877 3.6684 16 6 -0.6970 4.1295 4.9247 17 1 -0.1161 3.9408 5.8153 18 6 -1.9150 4.8115 5.0153 19 7 -2.7352 4.8248 3.9955 20 14 -2.3708 5.7034 6.5922 21 1 -1.2809 5.5379 7.5873 22 1 -2.5639 7.1478 6.3058 23 1 -3.6296 5.1342 7.1367 24 6 -0.5814 4.3825 2.4957 25 6 -0.1277 3.9457 1.2854 26 1 -0.5401 -0.9352 -0.0004 27 1 -0.5400 0.9354 0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 4.3441 3.6735 -3.4635 30 1 4.7596 2.8809 -5.0024 31 1 3.0835 2.8414 -4.4051 32 1 6.1167 0.5719 -2.4167 33 1 6.5312 1.5553 -3.8410 34 1 6.1154 2.3481 -2.3023 35 1 3.0853 0.3481 -4.5658 36 1 4.7620 0.3876 -5.1626 37 1 4.3472 -0.5961 -3.7386 38 1 1.6814 1.2574 2.2955 39 1 0.8839 2.0185 4.4772 40 1 -3.5799 5.2975 4.0586 41 1 -1.2141 5.2558 2.5539 42 1 -0.4025 4.4744 0.3846 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225267471.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:04 Heat of formation + Delta-G solvation = 39.271315 kcal Electronic energy + Delta-G solvation = -21005.400061 eV Core-core repulsion = 17917.140473 eV Total energy + Delta-G solvation = -3088.259588 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.30919 -37.53602 -36.71828 -33.83525 -32.98971 -31.59541 -29.72851 -29.02431 -27.47833 -27.44407 -26.74392 -24.70642 -21.68410 -21.09032 -20.77421 -19.36865 -17.44379 -17.10240 -16.61021 -15.90419 -15.36081 -15.05724 -14.42374 -14.40854 -13.97534 -13.64182 -13.32698 -12.83676 -12.64515 -12.59972 -12.23256 -12.17933 -12.05903 -11.87829 -11.69085 -11.56673 -11.41365 -11.28860 -11.19851 -11.10078 -10.83277 -10.70241 -10.23625 -9.98894 -9.76128 -9.57311 -9.33164 -9.15897 -9.06044 -7.64455 -6.99226 -6.68651 -4.27300 2.43307 2.58851 2.77267 2.90587 2.95178 3.09968 3.15087 3.19605 3.96993 3.98310 4.47910 4.64627 4.78713 4.81618 4.90686 5.16420 5.39519 5.43351 5.44290 5.51581 5.56708 5.62198 5.66616 5.67683 5.68484 5.85861 6.02873 6.10070 6.11307 6.12830 6.18894 6.22056 6.69435 6.85101 6.96023 7.01114 7.12123 7.20253 7.46452 7.56028 7.71268 7.78232 8.01342 8.20522 8.43267 8.64999 8.91310 8.97990 10.26806 Molecular weight = 284.15amu Principal moments of inertia in cm(-1) A = 0.032125 B = 0.003007 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.384070 B = 9309.280539 C = 9547.264667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.193 4.193 3 C 0.234 3.766 4 H 0.096 0.904 5 C -0.159 4.159 6 C -0.162 4.162 7 C 0.048 3.952 8 C -0.140 4.140 9 C -0.140 4.140 10 C -0.139 4.139 11 O -0.312 6.312 12 C -0.007 4.007 13 C -0.165 4.165 14 C -0.192 4.192 15 C 0.089 3.911 16 C -0.464 4.464 17 H 0.076 0.924 18 C 0.073 3.927 19 N -0.805 5.805 20 Si 0.908 3.092 21 H -0.262 1.262 22 H -0.273 1.273 23 H -0.276 1.276 24 C -0.128 4.128 25 C -0.120 4.120 26 H 0.097 0.903 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.278 0.722 41 H 0.126 0.874 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.170 -6.136 -11.622 16.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.211 4.211 3 C 0.177 3.823 4 H 0.113 0.887 5 C -0.159 4.159 6 C -0.162 4.162 7 C 0.048 3.952 8 C -0.197 4.197 9 C -0.197 4.197 10 C -0.196 4.196 11 O -0.228 6.228 12 C -0.050 4.050 13 C -0.183 4.183 14 C -0.212 4.212 15 C 0.087 3.913 16 C -0.494 4.494 17 H 0.094 0.906 18 C -0.143 4.143 19 N -0.432 5.432 20 Si 0.733 3.267 21 H -0.186 1.186 22 H -0.198 1.198 23 H -0.201 1.201 24 C -0.147 4.147 25 C -0.139 4.139 26 H 0.115 0.885 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.089 0.911 41 H 0.143 0.857 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.878 -5.970 -11.860 16.549 hybrid contribution -0.335 0.123 0.961 1.026 sum 9.542 -5.847 -10.898 15.621 Atomic orbital electron populations 1.23976 0.96073 1.02657 0.96175 1.23110 0.96668 0.97074 1.04257 1.17503 0.87879 0.85687 0.91211 0.88711 1.21750 0.97449 1.01186 0.95561 1.22040 0.99023 0.99950 0.95191 1.17656 0.92484 0.96798 0.88217 1.21869 1.02248 0.95831 0.99739 1.21888 0.93585 1.02574 1.01678 1.21878 1.02193 0.96875 0.98691 1.85956 1.58698 1.48854 1.29302 1.18571 1.04697 0.99181 0.82548 1.20433 1.04227 1.00527 0.93159 1.20614 1.06403 0.98969 0.95221 1.17614 0.90435 0.89685 0.93562 1.19483 1.03852 1.31901 0.94194 0.90592 1.25855 0.95875 0.94642 0.97909 1.69812 1.08230 1.33948 1.31225 0.86262 0.78990 0.79490 0.81932 1.18567 1.19838 1.20099 1.20975 1.02086 1.00858 0.90816 1.19847 1.00429 0.95727 0.97856 0.88485 0.86846 0.86798 0.92036 0.91751 0.92071 0.92287 0.91739 0.92097 0.92140 0.91759 0.92305 0.88516 0.88659 0.91070 0.85676 0.88483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 13.68 29.01 0.40 -2.08 16 2 C -0.19 -3.04 8.80 -36.03 -0.32 -3.36 16 3 C 0.23 4.13 2.62 -30.67 -0.08 4.05 16 4 H 0.10 1.64 6.15 -51.93 -0.32 1.32 16 5 C -0.16 -2.67 12.93 -37.12 -0.48 -3.15 16 6 C -0.16 -2.38 11.77 -37.12 -0.44 -2.82 16 7 C 0.05 0.52 0.95 -157.30 -0.15 0.37 16 8 C -0.14 -1.38 8.43 37.15 0.31 -1.07 16 9 C -0.14 -1.27 8.43 37.16 0.31 -0.95 16 10 C -0.14 -1.25 8.43 37.16 0.31 -0.94 16 11 O -0.31 -6.56 8.58 -18.72 -0.16 -6.73 16 12 C -0.01 -0.16 5.62 -38.78 -0.22 -0.38 16 13 C -0.16 -3.69 8.55 -39.83 -0.34 -4.03 16 14 C -0.19 -4.69 9.74 -39.25 -0.38 -5.07 16 15 C 0.09 2.37 5.54 -106.80 -0.59 1.78 16 16 C -0.46 -12.29 9.04 -37.83 -0.34 -12.63 16 17 H 0.08 1.94 7.88 -52.49 -0.41 1.53 16 18 C 0.07 1.84 5.21 -17.34 -0.09 1.75 16 19 N -0.81 -20.91 10.94 55.54 0.61 -20.31 16 20 Si 0.91 18.81 29.58 -169.99 -5.03 13.78 16 21 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 24 C -0.13 -3.32 8.61 -39.25 -0.34 -3.66 16 25 C -0.12 -2.89 9.92 -39.83 -0.40 -3.28 16 26 H 0.10 1.32 8.06 -52.49 -0.42 0.89 16 27 H 0.11 2.15 6.27 -52.48 -0.33 1.82 16 28 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 1.91 5.70 -52.49 -0.30 1.61 16 39 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 40 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 41 H 0.13 3.34 6.28 -52.49 -0.33 3.01 16 42 H 0.10 2.18 8.06 -52.48 -0.42 1.75 16 LS Contribution 354.77 15.07 5.35 5.35 Total: -1.00 -28.26 354.77 -8.38 -36.64 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -6.32 Total: 6.74 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: -2.83 Total: -35.48 kcal Atomic # 7 Polarization: -20.91 SS G_CDS: 0.61 Total: -20.31 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.16 Total: -6.73 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.26 -8.38 -36.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225267471.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.912 kcal (2) G-P(sol) polarization free energy of solvation -28.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds