Wall clock time and date at job start Tue Mar 31 2020 06:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 120.00121 * 2 1 4 4 H 1.09002 * 109.47024 * 119.99694 * 3 2 1 5 5 C 1.47197 * 109.47638 * 240.00357 * 3 2 1 6 6 C 3.45409 * 131.19008 * 303.78360 * 2 1 3 7 7 C 4.83386 * 130.21476 * 294.37451 * 2 1 3 8 8 C 1.52991 * 109.47228 * 156.39439 * 7 6 5 9 9 C 1.52998 * 109.47113 * 276.39243 * 7 6 5 10 10 C 1.53003 * 109.47102 * 36.39282 * 7 6 5 11 11 O 1.42902 * 109.47118 * 0.02562 * 3 2 1 12 12 C 1.35671 * 117.00246 * 87.08937 * 11 3 2 13 13 C 1.39315 * 119.81887 * 354.52190 * 12 11 3 14 14 C 1.36436 * 120.18361 * 180.02562 * 13 12 11 15 15 C 1.40829 * 119.81205 * 0.27907 * 14 13 12 16 16 C 1.41219 * 120.17881 * 179.72582 * 15 14 13 17 17 H 1.07995 * 119.99691 * 28.36462 * 16 15 14 18 18 C 1.39886 * 119.99678 * 208.36763 * 16 15 14 19 19 N 1.30881 * 120.00576 * 12.75666 * 18 16 15 20 20 Si 1.86805 * 119.99576 * 192.75722 * 18 16 15 21 21 H 1.48502 * 109.47229 * 0.02562 * 20 18 16 22 22 H 1.48510 * 109.46890 * 120.00174 * 20 18 16 23 23 H 1.48496 * 109.47407 * 239.99676 * 20 18 16 24 24 C 1.40834 * 119.64527 * 359.42583 * 15 14 13 25 25 C 1.36439 * 119.80593 * 0.57332 * 24 15 14 26 26 H 1.07995 * 120.00470 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.99744 * 359.97438 * 1 2 3 28 28 H 1.07993 * 119.99757 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.47692 * 59.99561 * 8 7 6 30 30 H 1.09002 * 109.47607 * 180.02562 * 8 7 6 31 31 H 1.09003 * 109.47063 * 300.00051 * 8 7 6 32 32 H 1.09000 * 109.47301 * 59.99961 * 9 7 6 33 33 H 1.09006 * 109.47333 * 179.97438 * 9 7 6 34 34 H 1.08999 * 109.47282 * 299.99962 * 9 7 6 35 35 H 1.08995 * 109.47195 * 60.00287 * 10 7 6 36 36 H 1.09001 * 109.46820 * 180.02562 * 10 7 6 37 37 H 1.09000 * 109.46979 * 299.99835 * 10 7 6 38 38 H 1.08002 * 119.90678 * 359.97438 * 13 12 11 39 39 H 1.07998 * 120.09341 * 180.02562 * 14 13 12 40 40 H 0.97000 * 120.00062 * 179.97438 * 19 18 16 41 41 H 1.07994 * 120.09978 * 180.29381 * 24 15 14 42 42 H 1.08006 * 119.90524 * 179.69479 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 2.6902 1.3628 0.8900 5 6 2.9098 1.3832 -1.2019 6 6 3.5847 1.4454 -2.1604 7 6 4.4310 1.5234 -3.3623 8 6 4.1333 2.8233 -4.1122 9 6 5.9045 1.4980 -2.9510 10 6 4.1350 0.3300 -4.2728 11 8 1.1350 2.3913 0.0006 12 6 0.6885 2.8193 1.2081 13 6 1.0487 2.1300 2.3640 14 6 0.6035 2.5537 3.5821 15 6 -0.2271 3.6877 3.6684 16 6 -0.6970 4.1295 4.9247 17 1 -0.1161 3.9408 5.8153 18 6 -1.9150 4.8115 5.0153 19 7 -2.7352 4.8248 3.9955 20 14 -2.3708 5.7034 6.5922 21 1 -1.2809 5.5379 7.5873 22 1 -2.5639 7.1478 6.3058 23 1 -3.6296 5.1342 7.1367 24 6 -0.5814 4.3825 2.4957 25 6 -0.1277 3.9457 1.2854 26 1 -0.5401 -0.9352 -0.0004 27 1 -0.5400 0.9354 0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 4.3441 3.6735 -3.4635 30 1 4.7596 2.8809 -5.0024 31 1 3.0835 2.8414 -4.4051 32 1 6.1167 0.5719 -2.4167 33 1 6.5312 1.5553 -3.8410 34 1 6.1154 2.3481 -2.3023 35 1 3.0853 0.3481 -4.5658 36 1 4.7620 0.3876 -5.1626 37 1 4.3472 -0.5961 -3.7386 38 1 1.6814 1.2574 2.2955 39 1 0.8839 2.0185 4.4772 40 1 -3.5799 5.2975 4.0586 41 1 -1.2141 5.2558 2.5539 42 1 -0.4025 4.4744 0.3846 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225267471.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:03 Heat of formation + Delta-G solvation = 27.589699 kcal Electronic energy + Delta-G solvation = -21005.906614 eV Core-core repulsion = 17917.140473 eV Total energy + Delta-G solvation = -3088.766140 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.98836 -38.65425 -38.27134 -35.49327 -34.63820 -32.78706 -31.61963 -30.91826 -28.19343 -28.17038 -28.15515 -26.56541 -23.23737 -22.64959 -22.30893 -20.75273 -19.32207 -18.67667 -17.98112 -17.28807 -16.99753 -16.47268 -15.77061 -15.33312 -15.20836 -15.13074 -14.90344 -14.45773 -14.08020 -13.87933 -13.79512 -13.39302 -13.31435 -13.09781 -12.91671 -12.79619 -12.62123 -12.56579 -12.45949 -12.37817 -12.20751 -12.11184 -11.86791 -11.64309 -11.28875 -11.03788 -10.96460 -10.72578 -10.45592 -9.56908 -8.90133 -8.56882 -6.25577 0.91923 1.01008 1.17372 1.32284 1.40357 1.50386 1.55078 1.69690 2.23850 2.72897 2.74529 3.18428 3.67360 3.82737 3.98090 4.03061 4.05723 4.14259 4.29062 4.34273 4.35673 4.52047 4.74053 4.75273 4.83433 4.83652 4.93829 4.96656 4.96790 5.05126 5.12040 5.20096 5.20650 5.28887 5.36832 5.38764 5.51988 5.54174 5.62873 5.78472 5.86717 6.05696 6.25285 6.50692 6.55540 6.77172 6.95928 7.06210 8.40765 Molecular weight = 284.15amu Principal moments of inertia in cm(-1) A = 0.032125 B = 0.003007 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.384070 B = 9309.280539 C = 9547.264667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.187 4.187 3 C 0.228 3.772 4 H 0.097 0.903 5 C -0.214 4.214 6 C -0.135 4.135 7 C 0.038 3.962 8 C -0.139 4.139 9 C -0.137 4.137 10 C -0.136 4.136 11 O -0.324 6.324 12 C 0.007 3.993 13 C -0.160 4.160 14 C -0.200 4.200 15 C 0.058 3.942 16 C -0.498 4.498 17 H 0.076 0.924 18 C 0.031 3.969 19 N -0.838 5.838 20 Si 0.983 3.017 21 H -0.258 1.258 22 H -0.266 1.266 23 H -0.268 1.268 24 C -0.144 4.144 25 C -0.133 4.133 26 H 0.126 0.874 27 H 0.080 0.920 28 H 0.147 0.853 29 H 0.049 0.951 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.126 0.874 39 H 0.107 0.893 40 H 0.286 0.714 41 H 0.110 0.890 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.731 -7.287 -12.569 18.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.205 4.205 3 C 0.172 3.828 4 H 0.114 0.886 5 C -0.214 4.214 6 C -0.135 4.135 7 C 0.038 3.962 8 C -0.196 4.196 9 C -0.195 4.195 10 C -0.193 4.193 11 O -0.241 6.241 12 C -0.037 4.037 13 C -0.179 4.179 14 C -0.220 4.220 15 C 0.056 3.944 16 C -0.528 4.528 17 H 0.094 0.906 18 C -0.182 4.182 19 N -0.465 5.465 20 Si 0.805 3.195 21 H -0.182 1.182 22 H -0.191 1.191 23 H -0.193 1.193 24 C -0.164 4.164 25 C -0.152 4.152 26 H 0.144 0.856 27 H 0.099 0.901 28 H 0.164 0.836 29 H 0.068 0.932 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.144 0.856 39 H 0.125 0.875 40 H 0.096 0.904 41 H 0.128 0.872 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 11.454 -7.136 -12.825 18.617 hybrid contribution -0.699 0.406 1.042 1.319 sum 10.755 -6.729 -11.783 17.315 Atomic orbital electron populations 1.24001 0.96379 1.02531 0.97083 1.23287 0.96506 0.97304 1.03364 1.17716 0.87563 0.85428 0.92109 0.88554 1.21779 0.99159 1.03781 0.96704 1.23078 0.97833 0.97487 0.95105 1.18060 0.92940 0.98127 0.87045 1.21893 1.02288 0.94832 1.00630 1.21891 0.92471 1.02226 1.02866 1.21879 1.02296 0.95843 0.99310 1.85934 1.59553 1.50306 1.28270 1.18582 1.03349 0.98252 0.83481 1.20661 1.03899 1.01088 0.92209 1.20841 1.06063 0.98564 0.96501 1.17949 0.91684 0.90827 0.93988 1.19724 1.04956 1.33891 0.94243 0.90605 1.26718 0.95260 0.94772 1.01438 1.69877 1.08793 1.34576 1.33289 0.85138 0.78751 0.78183 0.77470 1.18182 1.19098 1.19256 1.20877 1.02922 1.00970 0.91620 1.19991 1.00924 0.96644 0.97670 0.85605 0.90124 0.83579 0.93162 0.88626 0.93149 0.92223 0.88885 0.93018 0.93030 0.88908 0.92229 0.85610 0.87463 0.90374 0.87238 0.87593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.17 13.68 67.78 0.93 -4.25 16 2 C -0.19 -5.61 8.80 25.64 0.23 -5.39 16 3 C 0.23 7.92 2.62 28.04 0.07 8.00 16 4 H 0.10 3.26 6.15 -2.39 -0.01 3.24 16 5 C -0.21 -7.05 12.93 31.12 0.40 -6.65 16 6 C -0.13 -3.80 11.77 31.13 0.37 -3.44 16 7 C 0.04 0.73 0.95 -53.99 -0.05 0.68 16 8 C -0.14 -2.46 8.43 71.98 0.61 -1.85 16 9 C -0.14 -2.09 8.43 71.98 0.61 -1.49 16 10 C -0.14 -2.05 8.43 71.98 0.61 -1.45 16 11 O -0.32 -13.78 8.58 -89.88 -0.77 -14.56 16 12 C 0.01 0.31 5.62 22.79 0.13 0.44 16 13 C -0.16 -7.15 8.55 22.11 0.19 -6.96 16 14 C -0.20 -9.88 9.74 22.48 0.22 -9.66 16 15 C 0.06 3.16 5.54 -21.28 -0.12 3.04 16 16 C -0.50 -27.13 9.04 23.40 0.21 -26.92 16 17 H 0.08 3.97 7.88 -2.91 -0.02 3.95 16 18 C 0.03 1.59 5.21 85.23 0.44 2.03 16 19 N -0.84 -44.75 10.94 21.82 0.24 -44.51 16 20 Si 0.98 38.92 29.58 68.60 2.03 40.95 16 21 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 22 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 23 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 24 C -0.14 -7.83 8.61 22.49 0.19 -7.63 16 25 C -0.13 -6.66 9.92 22.11 0.22 -6.44 16 26 H 0.13 3.19 8.06 -2.91 -0.02 3.16 16 27 H 0.08 3.11 6.27 -2.91 -0.02 3.09 16 28 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 29 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 33 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 38 H 0.13 4.81 5.70 -2.91 -0.02 4.79 16 39 H 0.11 4.92 8.06 -2.91 -0.02 4.89 16 40 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 41 H 0.11 6.17 6.28 -2.91 -0.02 6.16 16 42 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -63.03 354.77 7.74 -55.29 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: 0.99 Total: 30.77 kcal Atomic # 6 Polarization: -73.20 SS G_CDS: 5.25 Total: -67.94 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 0.24 Total: -44.51 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.77 Total: -14.56 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Total: -63.03 7.74 -55.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225267471.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.884 kcal (2) G-P(sol) polarization free energy of solvation -63.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds