Wall clock time and date at job start Tue Mar 31 2020 06:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46909 * 109.46997 * 2 1 4 4 C 1.46900 * 109.47306 * 240.00401 * 2 1 3 5 5 C 1.46898 * 109.47541 * 119.99707 * 2 1 3 6 6 C 1.53003 * 109.46543 * 65.64077 * 5 2 1 7 7 H 1.09001 * 109.47249 * 313.97900 * 6 5 2 8 8 C 1.50700 * 109.47646 * 73.98729 * 6 5 2 9 9 H 1.08001 * 119.99519 * 244.67553 * 8 6 5 10 10 C 1.37871 * 120.00023 * 64.66536 * 8 6 5 11 11 N 1.31515 * 119.99928 * 192.27988 * 10 8 6 12 12 Si 1.86799 * 119.99944 * 12.28484 * 10 8 6 13 13 H 1.48502 * 109.47076 * 84.47203 * 12 10 8 14 14 H 1.48503 * 109.47090 * 204.46681 * 12 10 8 15 15 H 1.48500 * 109.47314 * 324.46880 * 12 10 8 16 16 O 1.42900 * 109.46710 * 193.98383 * 6 5 2 17 17 C 1.36056 * 117.00097 * 152.02177 * 16 6 5 18 18 C 1.39097 * 120.08047 * 267.55657 * 17 16 6 19 19 O 1.35997 * 120.06322 * 0.04019 * 18 17 16 20 20 C 1.38590 * 119.88132 * 180.27091 * 18 17 16 21 21 C 1.38256 * 120.03255 * 359.47052 * 20 18 17 22 22 C 1.38219 * 120.16271 * 0.25886 * 21 20 18 23 23 C 1.38455 * 120.12157 * 359.97438 * 22 21 20 24 24 F 1.35102 * 120.01989 * 179.97438 * 23 22 21 25 25 H 1.09003 * 109.47124 * 302.75445 * 1 2 3 26 26 H 1.09000 * 109.47510 * 62.74870 * 1 2 3 27 27 H 1.08997 * 109.46823 * 182.75047 * 1 2 3 28 28 H 1.09003 * 109.47115 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46657 * 300.00062 * 3 2 1 30 30 H 1.08998 * 109.47214 * 60.00172 * 3 2 1 31 31 H 1.09004 * 109.46932 * 309.84481 * 4 2 1 32 32 H 1.09003 * 109.47624 * 69.83702 * 4 2 1 33 33 H 1.08997 * 109.47454 * 189.84654 * 4 2 1 34 34 H 1.08997 * 109.47316 * 305.64070 * 5 2 1 35 35 H 1.09002 * 109.46964 * 185.63610 * 5 2 1 36 36 H 0.96999 * 119.99701 * 180.02562 * 11 10 8 37 37 H 0.96692 * 114.00076 * 270.23561 * 19 18 17 38 38 H 1.07996 * 119.98037 * 179.74751 * 20 18 17 39 39 H 1.08006 * 119.91751 * 180.27494 * 21 20 18 40 40 H 1.08001 * 119.94055 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3851 0.0000 4 6 1.9587 -0.6924 -1.1995 5 6 1.9587 -0.6924 1.1994 6 6 1.5678 -2.1700 1.1305 7 1 0.5230 -2.2559 0.8318 8 6 2.4383 -2.8736 0.1214 9 1 1.9989 -3.2927 -0.7718 10 6 3.7955 -2.9820 0.3383 11 7 4.5879 -3.3734 -0.6356 12 14 4.5088 -2.5733 2.0157 13 1 4.4052 -3.7614 2.9005 14 1 5.9358 -2.1901 1.8667 15 1 3.7527 -1.4436 2.6133 16 8 1.7468 -2.7704 2.4148 17 6 0.9517 -3.8324 2.7165 18 6 -0.2544 -3.6340 3.3805 19 8 -0.6417 -2.3778 3.7288 20 6 -1.0585 -4.7193 3.6907 21 6 -0.6672 -5.9956 3.3309 22 6 0.5282 -6.1941 2.6661 23 6 1.3389 -5.1151 2.3572 24 9 2.5072 -5.3114 1.7078 25 1 -0.3633 0.5560 0.8643 26 1 -0.3634 0.4705 -0.9136 27 1 -0.3633 -1.0265 0.0493 28 1 3.0487 1.3851 -0.0005 29 1 1.5952 1.8989 -0.8901 30 1 1.5953 1.8989 0.8900 31 1 1.4590 -1.6568 -1.2917 32 1 1.7459 -0.0873 -2.0808 33 1 3.0344 -0.8471 -1.1160 34 1 1.5153 -0.2402 2.0865 35 1 3.0441 -0.6058 1.2512 36 1 5.5427 -3.4500 -0.4829 37 1 -0.3379 -2.1010 4.6040 38 1 -1.9932 -4.5675 4.2098 39 1 -1.2974 -6.8396 3.5697 40 1 0.8301 -7.1926 2.3864 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225801498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:24 Heat of formation + Delta-G solvation = 26.424530 kcal Electronic energy + Delta-G solvation = -24653.303819 eV Core-core repulsion = 21081.947757 eV Total energy + Delta-G solvation = -3571.356062 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.145 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.22226 -43.38945 -40.85117 -38.50416 -37.39552 -34.60008 -32.41492 -30.65762 -30.48361 -30.21673 -29.87636 -27.85373 -24.77307 -23.61412 -23.52036 -22.68805 -20.12714 -19.41056 -18.57114 -18.47507 -17.99062 -17.87047 -17.42737 -17.06468 -16.39104 -16.18834 -15.73491 -15.40083 -15.29536 -14.95142 -14.80477 -14.46870 -14.40891 -14.21584 -14.12064 -14.02845 -13.70623 -13.39141 -13.34482 -13.07257 -12.74275 -12.67847 -12.11935 -11.98654 -11.85760 -11.68169 -10.84064 -10.31177 -10.09865 -9.53998 -9.34199 -7.79174 -5.96577 0.04855 0.24773 0.36163 1.88990 1.96436 2.20109 2.26190 2.35789 2.37978 2.51650 2.90294 2.97777 3.13354 3.19647 3.22945 3.38569 3.51012 3.59686 3.68715 3.70269 3.72762 3.78094 3.96946 4.01536 4.05278 4.11006 4.20603 4.27802 4.39913 4.67483 4.74549 4.84214 5.06805 5.23698 5.28822 5.42545 5.62687 5.79642 6.43031 6.61575 6.86311 7.14047 7.77968 9.26961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.257 5.257 3 C -0.039 4.039 4 C -0.033 4.033 5 C -0.003 4.003 6 C 0.171 3.829 7 H 0.053 0.947 8 C -0.586 4.586 9 H 0.092 0.908 10 C 0.103 3.897 11 N -0.842 5.842 12 Si 0.892 3.108 13 H -0.267 1.267 14 H -0.298 1.298 15 H -0.261 1.261 16 O -0.330 6.330 17 C 0.052 3.948 18 C 0.104 3.896 19 O -0.493 6.493 20 C -0.152 4.152 21 C -0.085 4.085 22 C -0.159 4.159 23 C 0.115 3.885 24 F -0.106 7.106 25 H 0.112 0.888 26 H 0.114 0.886 27 H 0.121 0.879 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.112 0.888 31 H 0.143 0.857 32 H 0.089 0.911 33 H 0.130 0.870 34 H 0.108 0.892 35 H 0.127 0.873 36 H 0.281 0.719 37 H 0.392 0.608 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.944 12.459 0.462 15.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 N 0.084 4.916 3 C -0.181 4.181 4 C -0.173 4.173 5 C -0.124 4.124 6 C 0.117 3.883 7 H 0.071 0.929 8 C -0.621 4.621 9 H 0.110 0.890 10 C -0.110 4.110 11 N -0.473 5.473 12 Si 0.722 3.278 13 H -0.192 1.192 14 H -0.226 1.226 15 H -0.188 1.188 16 O -0.248 6.248 17 C 0.007 3.993 18 C 0.059 3.941 19 O -0.303 6.303 20 C -0.171 4.171 21 C -0.103 4.103 22 C -0.178 4.178 23 C 0.095 3.905 24 F -0.084 7.084 25 H 0.130 0.870 26 H 0.132 0.868 27 H 0.139 0.861 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.130 0.870 31 H 0.161 0.839 32 H 0.108 0.892 33 H 0.148 0.852 34 H 0.127 0.873 35 H 0.145 0.855 36 H 0.092 0.908 37 H 0.248 0.752 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.811 12.479 -0.115 15.874 hybrid contribution 0.879 -0.158 1.216 1.508 sum -8.932 12.322 1.100 15.258 Atomic orbital electron populations 1.24092 0.77648 1.09208 1.07781 1.45753 1.14400 1.14378 1.17020 1.24033 1.05614 0.80468 1.07969 1.24623 1.07829 1.01593 0.83217 1.24354 1.04816 0.98270 0.85005 1.20624 0.98165 0.87208 0.82290 0.92901 1.21183 0.92385 1.42242 1.06300 0.88979 1.24947 0.96771 0.92781 0.96514 1.69862 1.05941 1.39808 1.31680 0.86826 0.76690 0.80320 0.83966 1.19199 1.22599 1.18812 1.85991 1.57707 1.43644 1.37436 1.18937 0.91100 0.86931 1.02382 1.18521 0.90941 0.84880 0.99806 1.84722 1.77315 1.28299 1.39965 1.21353 1.01017 0.91707 1.02986 1.20879 0.95531 0.97012 0.96887 1.21257 0.95503 0.98857 1.02157 1.18061 0.84281 0.93183 0.94977 1.91646 1.43628 1.95420 1.77695 0.86958 0.86752 0.86106 0.86454 0.86567 0.86981 0.83905 0.89216 0.85171 0.87344 0.85516 0.90830 0.75152 0.84663 0.84482 0.84230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 0.49 7.82 60.06 0.47 0.96 16 2 N -0.26 2.31 0.05 -395.61 -0.02 2.29 16 3 C -0.04 0.47 7.99 60.07 0.48 0.95 16 4 C -0.03 0.21 6.67 60.06 0.40 0.61 16 5 C 0.00 0.01 3.09 -3.82 -0.01 0.00 16 6 C 0.17 0.18 2.00 -27.88 -0.06 0.13 16 7 H 0.05 -0.02 5.65 -51.93 -0.29 -0.32 16 8 C -0.59 -3.18 4.82 -34.44 -0.17 -3.34 16 9 H 0.09 0.71 7.14 -52.49 -0.37 0.33 16 10 C 0.10 0.89 4.28 -17.82 -0.08 0.81 16 11 N -0.84 -9.83 13.96 55.43 0.77 -9.05 16 12 Si 0.89 7.41 23.49 -169.99 -3.99 3.42 16 13 H -0.27 -3.02 7.11 56.52 0.40 -2.62 16 14 H -0.30 -2.94 7.11 56.52 0.40 -2.54 16 15 H -0.26 -1.25 5.11 56.52 0.29 -0.96 16 16 O -0.33 -1.42 5.87 -34.44 -0.20 -1.62 16 17 C 0.05 0.23 5.58 -39.09 -0.22 0.01 16 18 C 0.10 0.18 6.72 -39.13 -0.26 -0.08 16 19 O -0.49 0.32 13.29 -34.25 -0.46 -0.13 16 20 C -0.15 -0.10 9.98 -39.44 -0.39 -0.49 16 21 C -0.08 -0.07 10.04 -39.58 -0.40 -0.47 16 22 C -0.16 -0.49 10.02 -39.51 -0.40 -0.89 16 23 C 0.12 0.69 7.19 -39.33 -0.28 0.40 16 24 F -0.11 -1.01 14.48 2.25 0.03 -0.98 16 25 H 0.11 -1.35 8.12 -51.93 -0.42 -1.78 16 26 H 0.11 -1.48 8.13 -51.93 -0.42 -1.91 16 27 H 0.12 -1.06 5.94 -51.93 -0.31 -1.37 16 28 H 0.12 -1.33 8.11 -51.93 -0.42 -1.75 16 29 H 0.12 -1.61 8.07 -51.92 -0.42 -2.03 16 30 H 0.11 -1.49 8.13 -51.93 -0.42 -1.91 16 31 H 0.14 -0.55 5.19 -51.93 -0.27 -0.82 16 32 H 0.09 -0.85 7.99 -51.93 -0.42 -1.27 16 33 H 0.13 -0.40 7.04 -51.93 -0.37 -0.77 16 34 H 0.11 -0.65 8.10 -51.93 -0.42 -1.07 16 35 H 0.13 -0.27 4.73 -51.93 -0.25 -0.52 16 36 H 0.28 3.32 8.31 -40.82 -0.34 2.98 16 37 H 0.39 -1.68 9.06 45.56 0.41 -1.26 16 38 H 0.14 -0.19 8.06 -52.49 -0.42 -0.61 16 39 H 0.14 -0.23 8.06 -52.48 -0.42 -0.66 16 40 H 0.14 0.25 8.06 -52.49 -0.42 -0.18 16 LS Contribution 310.55 15.07 4.68 4.68 Total: 0.00 -18.82 310.55 -5.00 -23.82 By element: Atomic # 1 Polarization: -16.11 SS G_CDS: -4.90 Total: -21.01 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -0.91 Total: -1.40 kcal Atomic # 7 Polarization: -7.52 SS G_CDS: 0.75 Total: -6.77 kcal Atomic # 8 Polarization: -1.09 SS G_CDS: -0.66 Total: -1.75 kcal Atomic # 9 Polarization: -1.01 SS G_CDS: 0.03 Total: -0.98 kcal Atomic # 14 Polarization: 7.41 SS G_CDS: -3.99 Total: 3.42 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -18.82 -5.00 -23.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225801498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.240 kcal (2) G-P(sol) polarization free energy of solvation -18.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds