Wall clock time and date at job start Tue Mar 31 2020 06:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46909 * 109.46997 * 2 1 4 4 C 1.46900 * 109.47306 * 240.00401 * 2 1 3 5 5 C 1.46898 * 109.47541 * 119.99707 * 2 1 3 6 6 C 1.53003 * 109.46543 * 65.64077 * 5 2 1 7 7 H 1.09001 * 109.47249 * 313.97900 * 6 5 2 8 8 C 1.50700 * 109.47646 * 73.98729 * 6 5 2 9 9 H 1.08001 * 119.99519 * 244.67553 * 8 6 5 10 10 C 1.37871 * 120.00023 * 64.66536 * 8 6 5 11 11 N 1.31515 * 119.99928 * 192.27988 * 10 8 6 12 12 Si 1.86799 * 119.99944 * 12.28484 * 10 8 6 13 13 H 1.48502 * 109.47076 * 84.47203 * 12 10 8 14 14 H 1.48503 * 109.47090 * 204.46681 * 12 10 8 15 15 H 1.48500 * 109.47314 * 324.46880 * 12 10 8 16 16 O 1.42900 * 109.46710 * 193.98383 * 6 5 2 17 17 C 1.36056 * 117.00097 * 152.02177 * 16 6 5 18 18 C 1.39097 * 120.08047 * 267.55657 * 17 16 6 19 19 O 1.35997 * 120.06322 * 0.04019 * 18 17 16 20 20 C 1.38590 * 119.88132 * 180.27091 * 18 17 16 21 21 C 1.38256 * 120.03255 * 359.47052 * 20 18 17 22 22 C 1.38219 * 120.16271 * 0.25886 * 21 20 18 23 23 C 1.38455 * 120.12157 * 359.97438 * 22 21 20 24 24 F 1.35102 * 120.01989 * 179.97438 * 23 22 21 25 25 H 1.09003 * 109.47124 * 302.75445 * 1 2 3 26 26 H 1.09000 * 109.47510 * 62.74870 * 1 2 3 27 27 H 1.08997 * 109.46823 * 182.75047 * 1 2 3 28 28 H 1.09003 * 109.47115 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46657 * 300.00062 * 3 2 1 30 30 H 1.08998 * 109.47214 * 60.00172 * 3 2 1 31 31 H 1.09004 * 109.46932 * 309.84481 * 4 2 1 32 32 H 1.09003 * 109.47624 * 69.83702 * 4 2 1 33 33 H 1.08997 * 109.47454 * 189.84654 * 4 2 1 34 34 H 1.08997 * 109.47316 * 305.64070 * 5 2 1 35 35 H 1.09002 * 109.46964 * 185.63610 * 5 2 1 36 36 H 0.96999 * 119.99701 * 180.02562 * 11 10 8 37 37 H 0.96692 * 114.00076 * 270.23561 * 19 18 17 38 38 H 1.07996 * 119.98037 * 179.74751 * 20 18 17 39 39 H 1.08006 * 119.91751 * 180.27494 * 21 20 18 40 40 H 1.08001 * 119.94055 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3851 0.0000 4 6 1.9587 -0.6924 -1.1995 5 6 1.9587 -0.6924 1.1994 6 6 1.5678 -2.1700 1.1305 7 1 0.5230 -2.2559 0.8318 8 6 2.4383 -2.8736 0.1214 9 1 1.9989 -3.2927 -0.7718 10 6 3.7955 -2.9820 0.3383 11 7 4.5879 -3.3734 -0.6356 12 14 4.5088 -2.5733 2.0157 13 1 4.4052 -3.7614 2.9005 14 1 5.9358 -2.1901 1.8667 15 1 3.7527 -1.4436 2.6133 16 8 1.7468 -2.7704 2.4148 17 6 0.9517 -3.8324 2.7165 18 6 -0.2544 -3.6340 3.3805 19 8 -0.6417 -2.3778 3.7288 20 6 -1.0585 -4.7193 3.6907 21 6 -0.6672 -5.9956 3.3309 22 6 0.5282 -6.1941 2.6661 23 6 1.3389 -5.1151 2.3572 24 9 2.5072 -5.3114 1.7078 25 1 -0.3633 0.5560 0.8643 26 1 -0.3634 0.4705 -0.9136 27 1 -0.3633 -1.0265 0.0493 28 1 3.0487 1.3851 -0.0005 29 1 1.5952 1.8989 -0.8901 30 1 1.5953 1.8989 0.8900 31 1 1.4590 -1.6568 -1.2917 32 1 1.7459 -0.0873 -2.0808 33 1 3.0344 -0.8471 -1.1160 34 1 1.5153 -0.2402 2.0865 35 1 3.0441 -0.6058 1.2512 36 1 5.5427 -3.4500 -0.4829 37 1 -0.3379 -2.1010 4.6040 38 1 -1.9932 -4.5675 4.2098 39 1 -1.2974 -6.8396 3.5697 40 1 0.8301 -7.1926 2.3864 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225801498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:23 Heat of formation + Delta-G solvation = 16.422507 kcal Electronic energy + Delta-G solvation = -24653.737539 eV Core-core repulsion = 21081.947757 eV Total energy + Delta-G solvation = -3571.789783 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.74761 -42.82670 -40.97046 -38.64923 -37.43830 -35.07772 -32.52642 -30.80076 -30.14952 -29.60550 -29.56781 -27.73396 -24.73816 -23.71544 -23.54872 -22.68145 -20.24908 -19.47949 -18.42557 -18.04294 -17.87285 -17.70657 -17.54007 -17.18287 -16.70667 -16.51537 -15.86534 -15.60411 -15.23370 -15.17365 -14.78246 -14.44673 -14.05928 -13.88555 -13.67119 -13.29538 -13.27785 -13.18452 -13.14493 -13.03597 -12.88283 -12.77319 -12.60007 -12.28383 -12.14836 -11.83069 -11.27697 -10.91776 -10.50407 -9.68846 -9.60885 -8.50422 -6.57753 -0.03092 0.07033 0.90219 1.17387 1.38205 1.49409 2.21093 2.24229 2.65427 2.86170 2.97193 3.03112 3.08165 3.38801 3.55655 3.78597 3.93642 3.97459 4.04507 4.19198 4.23971 4.27254 4.29777 4.39202 4.47469 4.57618 4.63242 4.68278 4.72400 4.79758 4.86161 4.90932 5.06224 5.17624 5.20898 5.25585 5.29627 5.63782 5.93483 6.36267 6.56786 6.81155 7.16710 8.59360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.244 5.244 3 C -0.045 4.045 4 C -0.028 4.028 5 C 0.007 3.993 6 C 0.165 3.835 7 H 0.073 0.927 8 C -0.543 4.543 9 H 0.062 0.938 10 C 0.077 3.923 11 N -0.903 5.903 12 Si 0.910 3.090 13 H -0.314 1.314 14 H -0.328 1.328 15 H -0.199 1.199 16 O -0.342 6.342 17 C 0.032 3.968 18 C 0.117 3.883 19 O -0.487 6.487 20 C -0.142 4.142 21 C -0.076 4.076 22 C -0.169 4.169 23 C 0.065 3.935 24 F -0.143 7.143 25 H 0.137 0.863 26 H 0.144 0.856 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.144 0.856 30 H 0.137 0.863 31 H 0.110 0.890 32 H 0.130 0.870 33 H 0.092 0.908 34 H 0.146 0.854 35 H 0.106 0.894 36 H 0.266 0.734 37 H 0.412 0.588 38 H 0.167 0.833 39 H 0.169 0.831 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.995 15.540 1.955 21.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 N 0.097 4.903 3 C -0.185 4.185 4 C -0.169 4.169 5 C -0.116 4.116 6 C 0.111 3.889 7 H 0.090 0.910 8 C -0.580 4.580 9 H 0.080 0.920 10 C -0.128 4.128 11 N -0.538 5.538 12 Si 0.743 3.257 13 H -0.243 1.243 14 H -0.258 1.258 15 H -0.123 1.123 16 O -0.260 6.260 17 C -0.013 4.013 18 C 0.072 3.928 19 O -0.300 6.300 20 C -0.161 4.161 21 C -0.094 4.094 22 C -0.188 4.188 23 C 0.046 3.954 24 F -0.121 7.121 25 H 0.156 0.844 26 H 0.162 0.838 27 H 0.115 0.885 28 H 0.125 0.875 29 H 0.163 0.837 30 H 0.155 0.845 31 H 0.129 0.871 32 H 0.148 0.852 33 H 0.110 0.890 34 H 0.164 0.836 35 H 0.124 0.876 36 H 0.075 0.925 37 H 0.271 0.729 38 H 0.185 0.815 39 H 0.186 0.814 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.912 15.623 1.420 20.968 hybrid contribution 1.910 -1.155 0.792 2.369 sum -12.002 14.468 2.212 18.928 Atomic orbital electron populations 1.24296 0.75579 1.08442 1.10623 1.45608 1.15706 1.15208 1.13784 1.24315 1.05323 0.78179 1.10671 1.24293 1.05095 1.01565 0.85954 1.23946 1.04141 0.94804 0.88672 1.20784 0.98344 0.89566 0.80246 0.90961 1.21320 0.91577 1.39187 1.05905 0.91986 1.25216 0.97631 0.93331 0.96656 1.69983 1.05211 1.45448 1.33199 0.86598 0.75726 0.80375 0.83006 1.24317 1.25802 1.12253 1.85908 1.58612 1.43641 1.37790 1.19227 0.92332 0.86256 1.03524 1.18464 0.89568 0.86208 0.98603 1.84676 1.76911 1.26914 1.41494 1.21740 1.01593 0.90981 1.01744 1.21258 0.94466 0.98487 0.95199 1.21440 0.96239 0.98367 1.02714 1.18672 0.84216 0.95276 0.97281 1.91549 1.45866 1.95743 1.78965 0.84436 0.83815 0.88459 0.87488 0.83747 0.84511 0.87128 0.85154 0.88952 0.83647 0.87612 0.92499 0.72851 0.81547 0.81380 0.84019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 1.22 7.82 127.69 1.00 2.22 16 2 N -0.24 4.87 0.05 ******* -0.07 4.80 16 3 C -0.04 1.22 7.99 127.69 1.02 2.24 16 4 C -0.03 0.34 6.67 127.69 0.85 1.20 16 5 C 0.01 -0.06 3.09 86.30 0.27 0.20 16 6 C 0.16 0.42 2.00 29.85 0.06 0.48 16 7 H 0.07 -0.08 5.65 -2.39 -0.01 -0.09 16 8 C -0.54 -7.68 4.82 25.60 0.12 -7.56 16 9 H 0.06 1.24 7.14 -2.91 -0.02 1.22 16 10 C 0.08 1.67 4.28 84.65 0.36 2.04 16 11 N -0.90 -26.34 13.96 21.45 0.30 -26.04 16 12 Si 0.91 18.20 23.49 68.60 1.61 19.81 16 13 H -0.31 -8.79 7.11 99.48 0.71 -8.09 16 14 H -0.33 -7.97 7.11 99.48 0.71 -7.26 16 15 H -0.20 -1.82 5.11 99.48 0.51 -1.31 16 16 O -0.34 -3.07 5.87 -80.30 -0.47 -3.54 16 17 C 0.03 0.30 5.58 22.59 0.13 0.42 16 18 C 0.12 0.18 6.72 22.56 0.15 0.33 16 19 O -0.49 2.32 13.29 -79.63 -1.06 1.26 16 20 C -0.14 0.20 9.98 22.36 0.22 0.42 16 21 C -0.08 -0.02 10.04 22.27 0.22 0.21 16 22 C -0.17 -1.26 10.02 22.32 0.22 -1.04 16 23 C 0.07 0.95 7.19 22.43 0.16 1.11 16 24 F -0.14 -3.44 14.48 44.97 0.65 -2.79 16 25 H 0.14 -4.01 8.12 -2.39 -0.02 -4.03 16 26 H 0.14 -4.34 8.13 -2.39 -0.02 -4.36 16 27 H 0.10 -1.88 5.94 -2.39 -0.01 -1.90 16 28 H 0.11 -2.58 8.11 -2.39 -0.02 -2.60 16 29 H 0.14 -4.63 8.07 -2.38 -0.02 -4.65 16 30 H 0.14 -4.28 8.13 -2.39 -0.02 -4.29 16 31 H 0.11 -0.63 5.19 -2.38 -0.01 -0.64 16 32 H 0.13 -2.66 7.99 -2.39 -0.02 -2.68 16 33 H 0.09 -0.33 7.04 -2.39 -0.02 -0.35 16 34 H 0.15 -2.34 8.10 -2.39 -0.02 -2.36 16 35 H 0.11 -0.50 4.73 -2.39 -0.01 -0.51 16 36 H 0.27 8.02 8.31 -92.71 -0.77 7.25 16 37 H 0.41 -5.08 9.06 -74.06 -0.67 -5.75 16 38 H 0.17 -1.22 8.06 -2.91 -0.02 -1.24 16 39 H 0.17 -1.05 8.06 -2.91 -0.02 -1.07 16 40 H 0.14 0.80 8.06 -2.91 -0.02 0.78 16 Total: 0.00 -54.10 310.55 5.94 -48.16 By element: Atomic # 1 Polarization: -44.12 SS G_CDS: 0.19 Total: -43.94 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 4.79 Total: 2.28 kcal Atomic # 7 Polarization: -21.47 SS G_CDS: 0.23 Total: -21.24 kcal Atomic # 8 Polarization: -0.75 SS G_CDS: -1.53 Total: -2.28 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.65 Total: -2.79 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: 1.61 Total: 19.81 kcal Total: -54.10 5.94 -48.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225801498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.583 kcal (2) G-P(sol) polarization free energy of solvation -54.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds