Wall clock time and date at job start Tue Mar 31 2020 06:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46898 * 109.47557 * 2 1 4 4 C 1.46900 * 109.46998 * 240.00157 * 2 1 3 5 5 C 1.46900 * 109.47183 * 120.00256 * 2 1 3 6 6 C 1.53009 * 109.47115 * 63.82603 * 5 2 1 7 7 H 1.08997 * 109.46745 * 54.89563 * 6 5 2 8 8 C 1.50693 * 109.47344 * 174.90121 * 6 5 2 9 9 H 1.08000 * 120.00255 * 240.00006 * 8 6 5 10 10 C 1.37882 * 119.99777 * 59.99765 * 8 6 5 11 11 N 1.31506 * 120.00243 * 0.02562 * 10 8 6 12 12 Si 1.86808 * 119.99785 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46786 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47060 * 119.99719 * 12 10 8 15 15 H 1.48501 * 109.47027 * 240.00119 * 12 10 8 16 16 O 1.42909 * 109.46817 * 294.90062 * 6 5 2 17 17 C 1.35947 * 116.99797 * 152.32443 * 16 6 5 18 18 C 1.38609 * 120.03539 * 5.68515 * 17 16 6 19 19 C 1.38631 * 119.91786 * 180.02562 * 18 17 16 20 20 O 1.35945 * 120.00843 * 180.02562 * 19 18 17 21 21 C 1.38734 * 119.98341 * 359.72723 * 19 18 17 22 22 C 1.38205 * 120.06864 * 0.55140 * 21 19 18 23 23 C 1.38324 * 120.08546 * 359.44371 * 22 21 19 24 24 F 1.35094 * 119.99826 * 180.25605 * 23 22 21 25 25 H 1.09004 * 109.46795 * 291.20226 * 1 2 3 26 26 H 1.09007 * 109.47032 * 51.19921 * 1 2 3 27 27 H 1.09000 * 109.47406 * 171.19912 * 1 2 3 28 28 H 1.09001 * 109.47275 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47242 * 300.00453 * 3 2 1 30 30 H 1.09003 * 109.47143 * 60.00106 * 3 2 1 31 31 H 1.09005 * 109.47112 * 300.00120 * 4 2 1 32 32 H 1.09000 * 109.47350 * 59.99861 * 4 2 1 33 33 H 1.09001 * 109.47464 * 180.02562 * 4 2 1 34 34 H 1.09003 * 109.46912 * 303.82998 * 5 2 1 35 35 H 1.08994 * 109.47203 * 183.82310 * 5 2 1 36 36 H 0.97002 * 119.99937 * 179.97438 * 11 10 8 37 37 H 1.08007 * 120.04047 * 359.97438 * 18 17 16 38 38 H 0.96699 * 113.99783 * 90.00138 * 20 19 18 39 39 H 1.08008 * 119.96512 * 180.26829 * 21 19 18 40 40 H 1.08003 * 119.96036 * 179.72801 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9588 1.3849 0.0000 4 6 1.9586 -0.6925 -1.1995 5 6 1.9587 -0.6925 1.1994 6 6 1.5288 -2.1602 1.1521 7 1 1.8704 -2.6090 0.2194 8 6 2.1353 -2.8992 2.3170 9 1 2.7968 -3.7346 2.1412 10 6 1.8459 -2.5086 3.6073 11 7 1.0401 -1.4917 3.8214 12 14 2.5984 -3.4242 5.0513 13 1 3.4633 -4.5204 4.5458 14 1 3.4140 -2.4848 5.8622 15 1 1.5166 -3.9948 5.8936 16 8 0.1039 -2.2418 1.2261 17 6 -0.4837 -3.3197 0.6422 18 6 0.2984 -4.3358 0.1156 19 6 -0.3034 -5.4336 -0.4798 20 8 0.4618 -6.4315 -0.9963 21 6 -1.6868 -5.5166 -0.5428 22 6 -2.4659 -4.5004 -0.0228 23 6 -1.8685 -3.4038 0.5720 24 9 -2.6319 -2.4139 1.0844 25 1 -0.3633 0.3717 0.9582 26 1 -0.3633 0.6440 -0.8009 27 1 -0.3634 -1.0155 -0.1572 28 1 3.0488 1.3849 0.0005 29 1 1.5954 1.8988 -0.8899 30 1 1.5955 1.8988 0.8900 31 1 1.5952 -1.7202 -1.1995 32 1 1.5953 -0.1786 -2.0894 33 1 3.0486 -0.6929 -1.1993 34 1 1.5403 -0.2199 2.0881 35 1 3.0465 -0.6336 1.2343 36 1 0.8361 -1.2172 4.7291 37 1 1.3752 -4.2719 0.1684 38 1 0.6685 -7.1350 -0.3660 39 1 -2.1554 -6.3741 -1.0029 40 1 -3.5427 -4.5648 -0.0768 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226127096.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:27 Heat of formation + Delta-G solvation = 11.059198 kcal Electronic energy + Delta-G solvation = -24317.101619 eV Core-core repulsion = 20745.079265 eV Total energy + Delta-G solvation = -3572.022353 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.145 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.44254 -43.40647 -40.78008 -39.04248 -36.86248 -34.75519 -31.92759 -31.11676 -30.41253 -30.21337 -29.63610 -27.89369 -25.21517 -24.25926 -23.20351 -22.28628 -19.91600 -19.11101 -18.67244 -18.51856 -18.20356 -17.95342 -17.48386 -17.03711 -16.58622 -16.08116 -15.79922 -15.29707 -15.13862 -15.06363 -14.78849 -14.60534 -14.33366 -14.16266 -14.12197 -13.99295 -13.79110 -13.55910 -13.50409 -13.10138 -12.72502 -12.43798 -12.32969 -12.19500 -11.72413 -11.50870 -11.27958 -10.88715 -10.25457 -9.60201 -8.80240 -7.85271 -6.08490 0.21711 0.28107 0.46187 2.03101 2.18013 2.20554 2.23012 2.30445 2.33439 2.50188 2.62990 2.94355 3.11866 3.17958 3.34575 3.37731 3.46773 3.53295 3.60486 3.64740 3.70390 3.73535 3.79320 3.94146 4.06694 4.14665 4.20658 4.25916 4.39087 4.46873 4.77886 4.91269 5.04970 5.25747 5.31451 5.52033 5.78952 5.99802 6.16041 6.61397 6.79193 7.10584 7.77220 9.17214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.273 5.273 3 C -0.040 4.040 4 C -0.048 4.048 5 C -0.002 4.002 6 C 0.189 3.811 7 H 0.050 0.950 8 C -0.567 4.567 9 H 0.080 0.920 10 C 0.092 3.908 11 N -0.857 5.857 12 Si 0.904 3.096 13 H -0.266 1.266 14 H -0.274 1.274 15 H -0.274 1.274 16 O -0.294 6.294 17 C 0.137 3.863 18 C -0.208 4.208 19 C 0.134 3.866 20 O -0.499 6.499 21 C -0.168 4.168 22 C -0.102 4.102 23 C 0.041 3.959 24 F -0.135 7.135 25 H 0.122 0.878 26 H 0.100 0.900 27 H 0.128 0.872 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.160 0.840 35 H 0.124 0.876 36 H 0.280 0.720 37 H 0.148 0.852 38 H 0.396 0.604 39 H 0.135 0.865 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.889 8.230 -12.001 14.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 N 0.069 4.931 3 C -0.182 4.182 4 C -0.189 4.189 5 C -0.120 4.120 6 C 0.135 3.865 7 H 0.068 0.932 8 C -0.603 4.603 9 H 0.098 0.902 10 C -0.119 4.119 11 N -0.491 5.491 12 Si 0.730 3.270 13 H -0.190 1.190 14 H -0.199 1.199 15 H -0.199 1.199 16 O -0.208 6.208 17 C 0.089 3.911 18 C -0.227 4.227 19 C 0.090 3.910 20 O -0.310 6.310 21 C -0.186 4.186 22 C -0.121 4.121 23 C 0.021 3.979 24 F -0.114 7.114 25 H 0.141 0.859 26 H 0.119 0.881 27 H 0.146 0.854 28 H 0.132 0.868 29 H 0.128 0.872 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.178 0.822 35 H 0.142 0.858 36 H 0.090 0.910 37 H 0.166 0.834 38 H 0.253 0.747 39 H 0.153 0.847 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.685 8.910 -12.232 15.227 hybrid contribution 0.357 -0.777 1.473 1.703 sum 2.041 8.133 -10.759 13.641 Atomic orbital electron populations 1.24333 0.76199 1.09676 1.08030 1.46390 1.15722 1.14567 1.16465 1.24005 1.04889 0.81081 1.08234 1.24073 1.05013 1.02472 0.87375 1.24880 1.03358 0.97079 0.86706 1.20446 0.77655 0.89741 0.98631 0.93240 1.21235 1.31778 1.17764 0.89503 0.90168 1.25056 0.92730 0.94226 0.99886 1.69614 1.31177 1.24773 1.23522 0.86269 0.79624 0.80179 0.80947 1.18968 1.19937 1.19868 1.86405 1.25071 1.38209 1.71078 1.18716 0.90241 0.89472 0.92684 1.21477 1.01596 0.95580 1.04032 1.18249 0.89040 0.89350 0.94398 1.84779 1.71133 1.34356 1.40773 1.21123 0.92763 1.00528 1.04234 1.20838 1.00912 0.92145 0.98179 1.17054 0.86050 0.89708 1.05126 1.91490 1.74921 1.59556 1.85397 0.85948 0.88149 0.85351 0.86802 0.87160 0.86454 0.86496 0.87032 0.86524 0.82236 0.85781 0.90982 0.83409 0.74747 0.84691 0.84090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.32 7.14 60.06 0.43 0.75 16 2 N -0.27 2.54 0.05 -395.61 -0.02 2.52 16 3 C -0.04 0.49 8.00 60.06 0.48 0.97 16 4 C -0.05 0.51 7.55 60.06 0.45 0.96 16 5 C 0.00 0.01 3.55 -3.82 -0.01 -0.01 16 6 C 0.19 0.14 1.35 -27.88 -0.04 0.10 16 7 H 0.05 -0.08 3.94 -51.93 -0.20 -0.28 16 8 C -0.57 -3.53 8.26 -34.44 -0.28 -3.81 16 9 H 0.08 0.58 7.81 -52.49 -0.41 0.17 16 10 C 0.09 0.77 5.24 -17.82 -0.09 0.68 16 11 N -0.86 -7.32 10.93 55.43 0.61 -6.71 16 12 Si 0.90 7.78 29.54 -169.99 -5.02 2.76 16 13 H -0.27 -2.39 7.11 56.52 0.40 -1.98 16 14 H -0.27 -2.48 7.11 56.52 0.40 -2.08 16 15 H -0.27 -2.80 7.11 56.52 0.40 -2.40 16 16 O -0.29 -0.75 6.02 -19.57 -0.12 -0.87 16 17 C 0.14 0.40 5.92 -39.19 -0.23 0.17 16 18 C -0.21 -0.47 8.71 -39.30 -0.34 -0.81 16 19 C 0.13 0.26 6.70 -39.25 -0.26 0.00 16 20 O -0.50 -0.56 13.50 -19.57 -0.26 -0.83 16 21 C -0.17 -0.24 9.98 -39.41 -0.39 -0.63 16 22 C -0.10 -0.18 10.01 -39.56 -0.40 -0.57 16 23 C 0.04 0.13 7.31 -39.30 -0.29 -0.15 16 24 F -0.13 -0.62 17.11 2.25 0.04 -0.58 16 25 H 0.12 -0.72 7.96 -51.93 -0.41 -1.13 16 26 H 0.10 -1.07 8.02 -51.93 -0.42 -1.49 16 27 H 0.13 -0.62 4.93 -51.93 -0.26 -0.87 16 28 H 0.11 -1.48 8.12 -51.93 -0.42 -1.90 16 29 H 0.11 -1.54 8.08 -51.93 -0.42 -1.96 16 30 H 0.12 -1.35 8.14 -51.93 -0.42 -1.77 16 31 H 0.12 -1.01 5.91 -51.93 -0.31 -1.32 16 32 H 0.11 -1.44 8.14 -51.93 -0.42 -1.87 16 33 H 0.12 -1.39 8.14 -51.93 -0.42 -1.82 16 34 H 0.16 -0.12 6.08 -51.93 -0.32 -0.44 16 35 H 0.12 -0.64 8.11 -51.93 -0.42 -1.06 16 36 H 0.28 2.57 8.31 -40.82 -0.34 2.23 16 37 H 0.15 0.28 5.74 -52.48 -0.30 -0.02 16 38 H 0.40 -1.09 9.06 45.56 0.41 -0.68 16 39 H 0.14 -0.02 8.06 -52.48 -0.42 -0.45 16 40 H 0.14 -0.02 8.06 -52.48 -0.42 -0.44 16 LS Contribution 320.80 15.07 4.83 4.83 Total: 0.00 -17.13 320.80 -5.65 -22.77 By element: Atomic # 1 Polarization: -16.82 SS G_CDS: -4.72 Total: -21.55 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -0.98 Total: -2.36 kcal Atomic # 7 Polarization: -4.78 SS G_CDS: 0.59 Total: -4.19 kcal Atomic # 8 Polarization: -1.31 SS G_CDS: -0.38 Total: -1.69 kcal Atomic # 9 Polarization: -0.62 SS G_CDS: 0.04 Total: -0.58 kcal Atomic # 14 Polarization: 7.78 SS G_CDS: -5.02 Total: 2.76 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -17.13 -5.65 -22.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226127096.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.831 kcal (2) G-P(sol) polarization free energy of solvation -17.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds