Wall clock time and date at job start Tue Mar 31 2020 06:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46898 * 109.47557 * 2 1 4 4 C 1.46900 * 109.46998 * 240.00157 * 2 1 3 5 5 C 1.46900 * 109.47183 * 120.00256 * 2 1 3 6 6 C 1.53009 * 109.47115 * 63.82603 * 5 2 1 7 7 H 1.08997 * 109.46745 * 54.89563 * 6 5 2 8 8 C 1.50693 * 109.47344 * 174.90121 * 6 5 2 9 9 H 1.08000 * 120.00255 * 240.00006 * 8 6 5 10 10 C 1.37882 * 119.99777 * 59.99765 * 8 6 5 11 11 N 1.31506 * 120.00243 * 0.02562 * 10 8 6 12 12 Si 1.86808 * 119.99785 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46786 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47060 * 119.99719 * 12 10 8 15 15 H 1.48501 * 109.47027 * 240.00119 * 12 10 8 16 16 O 1.42909 * 109.46817 * 294.90062 * 6 5 2 17 17 C 1.35947 * 116.99797 * 152.32443 * 16 6 5 18 18 C 1.38609 * 120.03539 * 5.68515 * 17 16 6 19 19 C 1.38631 * 119.91786 * 180.02562 * 18 17 16 20 20 O 1.35945 * 120.00843 * 180.02562 * 19 18 17 21 21 C 1.38734 * 119.98341 * 359.72723 * 19 18 17 22 22 C 1.38205 * 120.06864 * 0.55140 * 21 19 18 23 23 C 1.38324 * 120.08546 * 359.44371 * 22 21 19 24 24 F 1.35094 * 119.99826 * 180.25605 * 23 22 21 25 25 H 1.09004 * 109.46795 * 291.20226 * 1 2 3 26 26 H 1.09007 * 109.47032 * 51.19921 * 1 2 3 27 27 H 1.09000 * 109.47406 * 171.19912 * 1 2 3 28 28 H 1.09001 * 109.47275 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47242 * 300.00453 * 3 2 1 30 30 H 1.09003 * 109.47143 * 60.00106 * 3 2 1 31 31 H 1.09005 * 109.47112 * 300.00120 * 4 2 1 32 32 H 1.09000 * 109.47350 * 59.99861 * 4 2 1 33 33 H 1.09001 * 109.47464 * 180.02562 * 4 2 1 34 34 H 1.09003 * 109.46912 * 303.82998 * 5 2 1 35 35 H 1.08994 * 109.47203 * 183.82310 * 5 2 1 36 36 H 0.97002 * 119.99937 * 179.97438 * 11 10 8 37 37 H 1.08007 * 120.04047 * 359.97438 * 18 17 16 38 38 H 0.96699 * 113.99783 * 90.00138 * 20 19 18 39 39 H 1.08008 * 119.96512 * 180.26829 * 21 19 18 40 40 H 1.08003 * 119.96036 * 179.72801 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9588 1.3849 0.0000 4 6 1.9586 -0.6925 -1.1995 5 6 1.9587 -0.6925 1.1994 6 6 1.5288 -2.1602 1.1521 7 1 1.8704 -2.6090 0.2194 8 6 2.1353 -2.8992 2.3170 9 1 2.7968 -3.7346 2.1412 10 6 1.8459 -2.5086 3.6073 11 7 1.0401 -1.4917 3.8214 12 14 2.5984 -3.4242 5.0513 13 1 3.4633 -4.5204 4.5458 14 1 3.4140 -2.4848 5.8622 15 1 1.5166 -3.9948 5.8936 16 8 0.1039 -2.2418 1.2261 17 6 -0.4837 -3.3197 0.6422 18 6 0.2984 -4.3358 0.1156 19 6 -0.3034 -5.4336 -0.4798 20 8 0.4618 -6.4315 -0.9963 21 6 -1.6868 -5.5166 -0.5428 22 6 -2.4659 -4.5004 -0.0228 23 6 -1.8685 -3.4038 0.5720 24 9 -2.6319 -2.4139 1.0844 25 1 -0.3633 0.3717 0.9582 26 1 -0.3633 0.6440 -0.8009 27 1 -0.3634 -1.0155 -0.1572 28 1 3.0488 1.3849 0.0005 29 1 1.5954 1.8988 -0.8899 30 1 1.5955 1.8988 0.8900 31 1 1.5952 -1.7202 -1.1995 32 1 1.5953 -0.1786 -2.0894 33 1 3.0486 -0.6929 -1.1993 34 1 1.5403 -0.2199 2.0881 35 1 3.0465 -0.6336 1.2343 36 1 0.8361 -1.2172 4.7291 37 1 1.3752 -4.2719 0.1684 38 1 0.6685 -7.1350 -0.3660 39 1 -2.1554 -6.3741 -1.0029 40 1 -3.5427 -4.5648 -0.0768 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226127096.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:27 Heat of formation + Delta-G solvation = 5.358518 kcal Electronic energy + Delta-G solvation = -24317.348819 eV Core-core repulsion = 20745.079265 eV Total energy + Delta-G solvation = -3572.269553 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.70616 -42.84501 -40.84790 -39.11857 -36.97398 -35.16354 -31.97311 -31.21770 -29.77779 -29.56046 -29.46330 -27.93427 -25.19197 -24.02692 -23.34884 -22.23910 -20.05856 -19.02369 -18.62180 -18.19250 -17.92080 -17.74203 -17.45127 -16.99278 -16.75431 -16.56483 -15.91510 -15.42907 -15.24056 -14.84667 -14.51407 -14.45618 -14.17873 -13.71602 -13.59282 -13.34898 -13.30263 -13.23311 -13.20216 -13.02970 -12.94601 -12.84600 -12.69113 -12.52779 -12.20802 -11.61741 -11.40921 -11.20659 -10.90109 -9.75376 -8.98930 -8.43786 -6.62334 0.06440 0.32250 0.96802 1.29310 1.43916 1.47818 2.22586 2.27519 2.48831 2.80390 3.02467 3.07042 3.18561 3.28861 3.39166 3.79481 3.90413 4.05784 4.12632 4.16608 4.25659 4.27147 4.29804 4.38996 4.45600 4.53684 4.57666 4.71592 4.73716 4.78553 4.84844 4.94639 5.03671 5.17893 5.21739 5.38418 5.52453 5.68422 5.71187 6.32949 6.68963 6.81782 7.21255 8.54371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.259 5.259 3 C -0.043 4.043 4 C -0.053 4.053 5 C 0.015 3.985 6 C 0.183 3.817 7 H 0.075 0.925 8 C -0.564 4.564 9 H 0.065 0.935 10 C 0.071 3.929 11 N -0.867 5.867 12 Si 0.919 3.081 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.301 1.301 16 O -0.298 6.298 17 C 0.130 3.870 18 C -0.214 4.214 19 C 0.135 3.865 20 O -0.507 6.507 21 C -0.170 4.170 22 C -0.098 4.098 23 C 0.017 3.983 24 F -0.148 7.148 25 H 0.099 0.901 26 H 0.139 0.861 27 H 0.100 0.900 28 H 0.129 0.871 29 H 0.141 0.859 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.144 0.856 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.142 0.858 36 H 0.268 0.732 37 H 0.149 0.851 38 H 0.412 0.588 39 H 0.153 0.847 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.299 9.121 -14.682 17.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 N 0.083 4.917 3 C -0.183 4.183 4 C -0.194 4.194 5 C -0.106 4.106 6 C 0.130 3.870 7 H 0.092 0.908 8 C -0.602 4.602 9 H 0.084 0.916 10 C -0.137 4.137 11 N -0.502 5.502 12 Si 0.748 3.252 13 H -0.196 1.196 14 H -0.207 1.207 15 H -0.228 1.228 16 O -0.212 6.212 17 C 0.082 3.918 18 C -0.233 4.233 19 C 0.090 3.910 20 O -0.320 6.320 21 C -0.188 4.188 22 C -0.117 4.117 23 C -0.003 4.003 24 F -0.126 7.126 25 H 0.118 0.882 26 H 0.157 0.843 27 H 0.118 0.882 28 H 0.147 0.853 29 H 0.159 0.841 30 H 0.127 0.873 31 H 0.112 0.888 32 H 0.162 0.838 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.160 0.840 36 H 0.078 0.922 37 H 0.166 0.834 38 H 0.272 0.728 39 H 0.171 0.829 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.115 9.792 -14.919 17.970 hybrid contribution 0.247 -1.148 2.220 2.511 sum 2.362 8.645 -12.699 15.543 Atomic orbital electron populations 1.24226 0.77099 1.08555 1.08255 1.46013 1.14874 1.15877 1.14925 1.24226 1.05914 0.78790 1.09375 1.24277 1.06229 1.01463 0.87418 1.24175 1.03977 0.94389 0.88053 1.20563 0.76447 0.92554 0.97485 0.90786 1.21488 1.30532 1.17376 0.90797 0.91636 1.25181 0.93588 0.94628 1.00273 1.69708 1.32689 1.25508 1.22306 0.86108 0.78340 0.79641 0.81078 1.19563 1.20685 1.22816 1.86433 1.25476 1.37918 1.71330 1.18857 0.90406 0.89747 0.92817 1.21490 1.01539 0.95767 1.04486 1.18357 0.89453 0.89382 0.93776 1.84732 1.71010 1.34704 1.41580 1.21332 0.92573 1.00913 1.04010 1.21064 1.01910 0.91463 0.97256 1.17329 0.86297 0.90257 1.06427 1.91449 1.75213 1.60196 1.85788 0.88234 0.84268 0.88164 0.85254 0.84105 0.87304 0.88768 0.83812 0.84696 0.85100 0.84013 0.92177 0.83388 0.72811 0.82894 0.82395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.62 7.14 127.69 0.91 1.53 16 2 N -0.26 5.15 0.05 ******* -0.07 5.08 16 3 C -0.04 1.13 8.00 127.69 1.02 2.15 16 4 C -0.05 1.25 7.55 127.69 0.96 2.22 16 5 C 0.01 -0.11 3.55 86.31 0.31 0.19 16 6 C 0.18 0.40 1.35 29.85 0.04 0.44 16 7 H 0.07 -0.23 3.94 -2.39 -0.01 -0.24 16 8 C -0.56 -7.85 8.26 25.60 0.21 -7.64 16 9 H 0.07 1.05 7.81 -2.91 -0.02 1.03 16 10 C 0.07 1.35 5.24 84.66 0.44 1.79 16 11 N -0.87 -16.91 10.93 21.45 0.23 -16.68 16 12 Si 0.92 18.17 29.54 68.60 2.03 20.19 16 13 H -0.27 -5.44 7.11 99.48 0.71 -4.73 16 14 H -0.28 -5.73 7.11 99.48 0.71 -5.02 16 15 H -0.30 -7.20 7.11 99.48 0.71 -6.49 16 16 O -0.30 -1.95 6.02 -92.95 -0.56 -2.51 16 17 C 0.13 0.92 5.92 22.52 0.13 1.05 16 18 C -0.21 -1.08 8.71 22.45 0.20 -0.89 16 19 C 0.14 0.51 6.70 22.48 0.15 0.66 16 20 O -0.51 -0.81 13.50 -92.93 -1.25 -2.07 16 21 C -0.17 -0.39 9.98 22.38 0.22 -0.17 16 22 C -0.10 -0.35 10.01 22.28 0.22 -0.13 16 23 C 0.02 0.13 7.31 22.45 0.16 0.29 16 24 F -0.15 -1.59 17.11 44.97 0.77 -0.82 16 25 H 0.10 -1.04 7.96 -2.38 -0.02 -1.06 16 26 H 0.14 -3.28 8.02 -2.38 -0.02 -3.30 16 27 H 0.10 -0.89 4.93 -2.39 -0.01 -0.90 16 28 H 0.13 -3.73 8.12 -2.39 -0.02 -3.75 16 29 H 0.14 -4.47 8.08 -2.39 -0.02 -4.49 16 30 H 0.11 -2.60 8.14 -2.39 -0.02 -2.62 16 31 H 0.09 -1.72 5.91 -2.38 -0.01 -1.73 16 32 H 0.14 -4.24 8.14 -2.39 -0.02 -4.26 16 33 H 0.13 -3.62 8.14 -2.39 -0.02 -3.64 16 34 H 0.13 -0.04 6.08 -2.39 -0.01 -0.05 16 35 H 0.14 -1.58 8.11 -2.39 -0.02 -1.60 16 36 H 0.27 5.72 8.31 -92.71 -0.77 4.95 16 37 H 0.15 0.65 5.74 -2.91 -0.02 0.63 16 38 H 0.41 -2.53 9.06 -74.06 -0.67 -3.20 16 39 H 0.15 -0.25 8.06 -2.91 -0.02 -0.27 16 40 H 0.16 -0.10 8.06 -2.91 -0.02 -0.12 16 Total: 0.00 -42.70 320.80 6.53 -36.17 By element: Atomic # 1 Polarization: -41.26 SS G_CDS: 0.39 Total: -40.87 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 4.99 Total: 1.51 kcal Atomic # 7 Polarization: -11.77 SS G_CDS: 0.17 Total: -11.60 kcal Atomic # 8 Polarization: -2.76 SS G_CDS: -1.81 Total: -4.57 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.77 Total: -0.82 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: 2.03 Total: 20.19 kcal Total: -42.70 6.53 -36.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226127096.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.531 kcal (2) G-P(sol) polarization free energy of solvation -42.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds