Wall clock time and date at job start Tue Mar 31 2020 06:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00062 * 2 1 4 4 H 1.48490 * 109.47309 * 240.00060 * 3 2 1 5 5 H 1.48507 * 109.47177 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46938 * 120.00040 * 3 2 1 7 7 C 1.38813 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00455 * 163.07323 * 7 2 1 9 9 N 1.36943 * 119.99476 * 343.07202 * 7 2 1 10 10 C 1.46924 * 120.62956 * 331.83306 * 9 7 2 11 11 C 1.53198 * 108.77699 * 233.63160 * 10 9 7 12 12 C 1.53039 * 109.31212 * 305.36989 * 11 10 9 13 13 N 1.46494 * 109.46200 * 181.38112 * 12 11 10 14 14 C 1.34777 * 120.00118 * 154.97010 * 13 12 11 15 15 O 1.21282 * 120.00187 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00063 * 179.73034 * 14 13 12 17 17 C 1.52997 * 112.85062 * 48.80318 * 16 14 13 18 18 F 1.39909 * 109.47138 * 189.67099 * 17 16 14 19 19 C 1.53782 * 113.61253 * 277.49976 * 16 14 13 20 20 C 1.53782 * 87.08138 * 220.01851 * 19 16 14 21 21 C 1.53781 * 87.08150 * 25.43067 * 20 19 16 22 22 C 1.53041 * 109.53000 * 61.36879 * 12 11 10 23 23 C 1.46926 * 120.62613 * 151.86037 * 9 7 2 24 24 H 0.97004 * 119.99708 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.58416 * 113.84744 * 10 9 7 26 26 H 1.09001 * 109.70975 * 353.49156 * 10 9 7 27 27 H 1.08990 * 109.49992 * 185.42046 * 11 10 9 28 28 H 1.08997 * 109.52331 * 65.33266 * 11 10 9 29 29 H 1.09001 * 109.46329 * 301.35838 * 12 11 10 30 30 H 0.96998 * 120.00158 * 334.97726 * 13 12 11 31 31 H 1.08997 * 109.47510 * 309.66668 * 17 16 14 32 32 H 1.08998 * 109.47248 * 69.66859 * 17 16 14 33 33 H 1.08999 * 113.61507 * 334.56366 * 19 16 14 34 34 H 1.08998 * 113.61532 * 105.46866 * 19 16 14 35 35 H 1.09002 * 113.61228 * 270.88053 * 20 19 16 36 36 H 1.09001 * 113.61717 * 139.98067 * 20 19 16 37 37 H 1.09001 * 113.61746 * 220.01842 * 21 20 19 38 38 H 1.09002 * 113.61196 * 89.11829 * 21 20 19 39 39 H 1.09000 * 109.49684 * 58.57885 * 22 12 11 40 40 H 1.08999 * 109.50352 * 178.67455 * 22 12 11 41 41 H 1.09001 * 109.58495 * 246.14858 * 23 9 7 42 42 H 1.08996 * 109.58847 * 6.44179 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2223 -0.2728 9 7 1.3700 -2.3625 0.3443 10 6 0.2263 -2.3408 1.2662 11 6 0.4982 -3.3202 2.4125 12 6 0.8132 -4.7015 1.8339 13 7 1.0415 -5.6485 2.9281 14 6 0.8380 -6.9664 2.7323 15 8 0.4664 -7.3684 1.6501 16 6 1.0787 -7.9411 3.8561 17 6 0.4126 -7.5142 5.1657 18 9 0.8566 -8.3388 6.2052 19 6 2.5539 -8.3447 4.0162 20 6 2.0521 -9.7727 4.2882 21 6 0.8016 -9.4043 3.4725 22 6 2.0685 -4.6172 0.9626 23 6 1.8143 -3.6528 -0.2003 24 1 -0.4850 0.8401 0.0004 25 1 -0.6768 -2.6417 0.7351 26 1 0.0965 -1.3357 1.6674 27 1 -0.3822 -3.3857 3.0516 28 1 1.3477 -2.9687 2.9980 29 1 -0.0268 -5.0419 1.2284 30 1 1.3389 -5.3271 3.7936 31 1 0.6743 -6.4793 5.3860 32 1 -0.6694 -7.6027 5.0687 33 1 3.1337 -8.2533 3.0977 34 1 3.0424 -7.8827 4.8741 35 1 1.8450 -9.9697 5.3400 36 1 2.6639 -10.5463 3.8241 37 1 -0.1246 -9.7977 3.8915 38 1 0.9024 -9.6025 2.4054 39 1 2.9033 -4.2531 1.5615 40 1 2.3060 -5.6058 0.5698 41 1 1.0407 -4.0606 -0.8509 42 1 2.7335 -3.5124 -0.7689 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229289308.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:05 Heat of formation + Delta-G solvation = -53.384591 kcal Electronic energy + Delta-G solvation = -23264.418523 eV Core-core repulsion = 19773.664600 eV Total energy + Delta-G solvation = -3490.753923 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.05682 -40.49099 -38.22210 -36.91417 -34.49415 -32.24853 -30.38092 -29.82591 -28.82033 -25.98088 -25.25704 -24.28480 -22.34392 -22.07194 -20.68102 -19.58509 -18.91220 -17.78340 -16.72569 -16.38793 -16.24038 -15.69042 -15.36685 -14.82723 -14.56181 -14.40831 -13.86360 -13.65102 -13.56390 -13.05065 -12.75895 -12.68054 -12.55183 -12.39523 -12.30921 -11.51047 -11.35004 -11.28624 -11.14236 -10.88545 -10.73682 -10.56227 -10.51339 -10.45743 -10.31840 -10.07205 -9.89125 -9.70788 -9.43634 -8.77922 -8.48210 -6.71167 -5.82034 -3.24474 2.60886 3.24130 3.37000 3.42533 3.43579 3.98618 4.18815 4.21636 4.47368 4.47492 4.56345 4.80569 4.96239 5.20692 5.24792 5.31805 5.41547 5.47544 5.50366 5.55417 5.58513 5.70020 5.75340 5.82938 5.92397 6.03738 6.18899 6.23118 6.29056 6.48827 6.51543 6.54751 6.76372 6.86121 6.96006 7.27917 7.54821 7.65612 7.77089 8.30125 8.42058 9.18201 9.81272 10.38271 11.26897 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.035912 B = 0.003522 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.501941 B = 7947.792605 C = 8139.575520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.175 3.825 11 C -0.147 4.147 12 C 0.149 3.851 13 N -0.722 5.722 14 C 0.529 3.471 15 O -0.534 6.534 16 C -0.148 4.148 17 C 0.090 3.910 18 F -0.207 7.207 19 C -0.115 4.115 20 C -0.145 4.145 21 C -0.110 4.110 22 C -0.138 4.138 23 C 0.147 3.853 24 H 0.255 0.745 25 H 0.021 0.979 26 H 0.092 0.908 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.394 0.606 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.020 0.980 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.023 -15.573 11.613 19.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.187 4.187 12 C 0.046 3.954 13 N -0.371 5.371 14 C 0.314 3.686 15 O -0.410 6.410 16 C -0.152 4.152 17 C 0.035 3.965 18 F -0.188 7.188 19 C -0.153 4.153 20 C -0.182 4.182 21 C -0.147 4.147 22 C -0.179 4.179 23 C 0.020 3.980 24 H 0.065 0.935 25 H 0.039 0.961 26 H 0.110 0.890 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.228 0.772 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.641 -15.701 10.814 19.135 hybrid contribution 0.571 1.087 0.451 1.308 sum 2.212 -14.614 11.265 18.584 Atomic orbital electron populations 1.70017 1.05258 1.25673 1.53809 1.25053 0.95290 0.98427 1.00792 0.86359 0.78906 0.83289 0.78145 1.20857 1.21617 1.21045 1.19158 0.92590 0.84769 1.41882 0.91676 1.44079 1.35818 1.01654 1.49963 1.20735 0.88912 0.97898 0.87648 1.22541 1.00513 0.94738 1.00875 1.21082 0.98568 0.88266 0.87448 1.46423 1.68353 1.06514 1.15845 1.19961 0.77162 0.82717 0.88789 1.90701 1.45994 1.78133 1.26174 1.22853 1.00398 0.97059 0.94885 1.21621 0.99471 0.93282 0.82138 1.92738 1.91347 1.74821 1.59873 1.22820 0.92655 0.97041 1.02735 1.23017 0.97318 0.96405 1.01493 1.22837 0.98716 0.91268 1.01903 1.22370 0.97115 0.99506 0.98883 1.20873 0.97917 0.86549 0.92617 0.93530 0.96116 0.89012 0.92753 0.92162 0.89985 0.77200 0.90061 0.89722 0.89306 0.90428 0.88714 0.91183 0.90984 0.88343 0.92320 0.92804 0.96198 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.83 11.19 55.49 0.62 -25.21 16 2 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 3 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.25 -6.90 9.58 -15.06 -0.14 -7.04 16 8 H 0.07 1.74 7.88 -52.49 -0.41 1.32 16 9 N -0.59 -14.65 2.99 -172.31 -0.52 -15.17 16 10 C 0.17 4.03 5.30 -3.71 -0.02 4.01 16 11 C -0.15 -2.60 5.55 -26.61 -0.15 -2.75 16 12 C 0.15 2.53 2.42 -67.89 -0.16 2.36 16 13 N -0.72 -9.60 4.96 -53.77 -0.27 -9.87 16 14 C 0.53 7.32 6.89 -10.99 -0.08 7.24 16 15 O -0.53 -9.54 15.56 5.56 0.09 -9.46 16 16 C -0.15 -1.53 1.26 -154.85 -0.19 -1.73 16 17 C 0.09 0.77 6.96 37.16 0.26 1.03 16 18 F -0.21 -1.97 14.57 2.25 0.03 -1.94 16 19 C -0.11 -1.08 6.96 -25.92 -0.18 -1.26 16 20 C -0.15 -1.27 7.57 -25.92 -0.20 -1.47 16 21 C -0.11 -1.12 6.97 -25.92 -0.18 -1.30 16 22 C -0.14 -2.49 5.65 -26.61 -0.15 -2.64 16 23 C 0.15 3.15 6.52 -3.71 -0.02 3.12 16 24 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.09 2.36 6.06 -51.93 -0.31 2.04 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.08 1.57 7.58 -51.93 -0.39 1.18 16 30 H 0.39 4.19 7.50 -40.82 -0.31 3.88 16 31 H 0.08 0.57 7.04 -51.93 -0.37 0.20 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 34 H 0.08 0.66 8.06 -51.93 -0.42 0.24 16 35 H 0.09 0.81 6.44 -51.93 -0.33 0.48 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 38 H 0.10 1.15 7.43 -51.93 -0.39 0.77 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 LS Contribution 332.29 15.07 5.01 5.01 Total: -1.00 -30.59 332.29 -8.07 -38.66 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.70 Total: 2.06 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -1.30 Total: -0.43 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: -0.16 Total: -50.25 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.03 Total: -1.94 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.59 -8.07 -38.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229289308.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.722 kcal (2) G-P(sol) polarization free energy of solvation -30.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds