Wall clock time and date at job start Tue Mar 31 2020 06:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00062 * 2 1 4 4 H 1.48490 * 109.47309 * 240.00060 * 3 2 1 5 5 H 1.48507 * 109.47177 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46938 * 120.00040 * 3 2 1 7 7 C 1.38813 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00455 * 163.07323 * 7 2 1 9 9 N 1.36943 * 119.99476 * 343.07202 * 7 2 1 10 10 C 1.46924 * 120.62956 * 331.83306 * 9 7 2 11 11 C 1.53198 * 108.77699 * 233.63160 * 10 9 7 12 12 C 1.53039 * 109.31212 * 305.36989 * 11 10 9 13 13 N 1.46494 * 109.46200 * 181.38112 * 12 11 10 14 14 C 1.34777 * 120.00118 * 154.97010 * 13 12 11 15 15 O 1.21282 * 120.00187 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00063 * 179.73034 * 14 13 12 17 17 C 1.52997 * 112.85062 * 48.80318 * 16 14 13 18 18 F 1.39909 * 109.47138 * 189.67099 * 17 16 14 19 19 C 1.53782 * 113.61253 * 277.49976 * 16 14 13 20 20 C 1.53782 * 87.08138 * 220.01851 * 19 16 14 21 21 C 1.53781 * 87.08150 * 25.43067 * 20 19 16 22 22 C 1.53041 * 109.53000 * 61.36879 * 12 11 10 23 23 C 1.46926 * 120.62613 * 151.86037 * 9 7 2 24 24 H 0.97004 * 119.99708 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.58416 * 113.84744 * 10 9 7 26 26 H 1.09001 * 109.70975 * 353.49156 * 10 9 7 27 27 H 1.08990 * 109.49992 * 185.42046 * 11 10 9 28 28 H 1.08997 * 109.52331 * 65.33266 * 11 10 9 29 29 H 1.09001 * 109.46329 * 301.35838 * 12 11 10 30 30 H 0.96998 * 120.00158 * 334.97726 * 13 12 11 31 31 H 1.08997 * 109.47510 * 309.66668 * 17 16 14 32 32 H 1.08998 * 109.47248 * 69.66859 * 17 16 14 33 33 H 1.08999 * 113.61507 * 334.56366 * 19 16 14 34 34 H 1.08998 * 113.61532 * 105.46866 * 19 16 14 35 35 H 1.09002 * 113.61228 * 270.88053 * 20 19 16 36 36 H 1.09001 * 113.61717 * 139.98067 * 20 19 16 37 37 H 1.09001 * 113.61746 * 220.01842 * 21 20 19 38 38 H 1.09002 * 113.61196 * 89.11829 * 21 20 19 39 39 H 1.09000 * 109.49684 * 58.57885 * 22 12 11 40 40 H 1.08999 * 109.50352 * 178.67455 * 22 12 11 41 41 H 1.09001 * 109.58495 * 246.14858 * 23 9 7 42 42 H 1.08996 * 109.58847 * 6.44179 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2223 -0.2728 9 7 1.3700 -2.3625 0.3443 10 6 0.2263 -2.3408 1.2662 11 6 0.4982 -3.3202 2.4125 12 6 0.8132 -4.7015 1.8339 13 7 1.0415 -5.6485 2.9281 14 6 0.8380 -6.9664 2.7323 15 8 0.4664 -7.3684 1.6501 16 6 1.0787 -7.9411 3.8561 17 6 0.4126 -7.5142 5.1657 18 9 0.8566 -8.3388 6.2052 19 6 2.5539 -8.3447 4.0162 20 6 2.0521 -9.7727 4.2882 21 6 0.8016 -9.4043 3.4725 22 6 2.0685 -4.6172 0.9626 23 6 1.8143 -3.6528 -0.2003 24 1 -0.4850 0.8401 0.0004 25 1 -0.6768 -2.6417 0.7351 26 1 0.0965 -1.3357 1.6674 27 1 -0.3822 -3.3857 3.0516 28 1 1.3477 -2.9687 2.9980 29 1 -0.0268 -5.0419 1.2284 30 1 1.3389 -5.3271 3.7936 31 1 0.6743 -6.4793 5.3860 32 1 -0.6694 -7.6027 5.0687 33 1 3.1337 -8.2533 3.0977 34 1 3.0424 -7.8827 4.8741 35 1 1.8450 -9.9697 5.3400 36 1 2.6639 -10.5463 3.8241 37 1 -0.1246 -9.7977 3.8915 38 1 0.9024 -9.6025 2.4054 39 1 2.9033 -4.2531 1.5615 40 1 2.3060 -5.6058 0.5698 41 1 1.0407 -4.0606 -0.8509 42 1 2.7335 -3.5124 -0.7689 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229289308.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:05 Heat of formation + Delta-G solvation = -71.890014 kcal Electronic energy + Delta-G solvation = -23265.220978 eV Core-core repulsion = 19773.664600 eV Total energy + Delta-G solvation = -3491.556378 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.74323 -41.55067 -39.51609 -38.21414 -36.03877 -33.99309 -31.94165 -31.41260 -29.90510 -27.06234 -26.63845 -25.35142 -23.96039 -23.62439 -21.82179 -21.11720 -19.90099 -19.01179 -18.37691 -17.45032 -16.96901 -16.84726 -16.57003 -16.26946 -15.75138 -15.64715 -15.38616 -15.23507 -14.80748 -14.47763 -14.29857 -14.13962 -13.48299 -13.36810 -13.23505 -13.13388 -13.00261 -12.58795 -12.55562 -12.27311 -12.16396 -12.03925 -11.95254 -11.89028 -11.58388 -11.38011 -11.28873 -11.16714 -10.70255 -10.55807 -10.05493 -8.71757 -7.88650 -5.34633 1.49035 1.50473 1.52176 1.57795 2.10835 2.51681 3.21022 3.27204 3.40118 3.42743 3.62853 3.69316 3.83900 3.89515 4.03265 4.10348 4.28736 4.31902 4.43867 4.50616 4.59461 4.62906 4.75611 4.79271 4.82483 4.85371 4.96986 5.01408 5.02879 5.06622 5.13621 5.17664 5.27861 5.44883 5.45892 5.52351 5.63517 5.70354 6.37881 6.54751 7.13748 7.21604 7.83021 8.35814 9.18223 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.035912 B = 0.003522 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.501941 B = 7947.792605 C = 8139.575520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.047 4.047 3 Si 0.969 3.031 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.268 4.268 8 H 0.067 0.933 9 N -0.609 5.609 10 C 0.178 3.822 11 C -0.129 4.129 12 C 0.161 3.839 13 N -0.708 5.708 14 C 0.530 3.470 15 O -0.577 6.577 16 C -0.142 4.142 17 C 0.091 3.909 18 F -0.210 7.210 19 C -0.113 4.113 20 C -0.135 4.135 21 C -0.117 4.117 22 C -0.123 4.123 23 C 0.144 3.856 24 H 0.251 0.749 25 H -0.006 1.006 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.412 0.588 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.006 0.994 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.227 -16.179 13.803 21.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.243 4.243 3 Si 0.797 3.203 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.201 1.201 7 C -0.398 4.398 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.168 4.168 12 C 0.056 3.944 13 N -0.359 5.359 14 C 0.317 3.683 15 O -0.456 6.456 16 C -0.146 4.146 17 C 0.036 3.964 18 F -0.191 7.191 19 C -0.151 4.151 20 C -0.172 4.172 21 C -0.154 4.154 22 C -0.163 4.163 23 C 0.018 3.982 24 H 0.060 0.940 25 H 0.012 0.988 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.249 0.751 31 H 0.120 0.880 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.120 0.880 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.024 0.976 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.870 -16.331 13.045 21.098 hybrid contribution 0.174 1.216 -0.305 1.265 sum 3.044 -15.116 12.740 20.001 Atomic orbital electron populations 1.70179 1.06691 1.26057 1.55130 1.25809 0.96025 1.01505 1.00943 0.85323 0.77550 0.79058 0.78382 1.20370 1.22021 1.20072 1.19494 0.92903 0.85890 1.41471 0.91535 1.44335 1.35980 1.02144 1.50778 1.20566 0.87657 0.97810 0.88772 1.22258 1.02090 0.93549 0.98910 1.20666 0.97122 0.88509 0.88080 1.46129 1.68121 1.05949 1.15658 1.20543 0.75796 0.82885 0.89074 1.90693 1.47858 1.78809 1.28288 1.22883 1.01486 0.95737 0.94494 1.21704 0.99798 0.94113 0.80808 1.92734 1.91426 1.75092 1.59809 1.22842 0.91823 0.97490 1.02931 1.22971 0.96307 0.96305 1.01594 1.22853 0.99991 0.91542 1.01055 1.22162 0.97870 0.98528 0.97775 1.20961 0.97296 0.86042 0.93895 0.93981 0.98827 0.91831 0.90229 0.91055 0.92426 0.75067 0.88003 0.88837 0.90256 0.88860 0.87970 0.90405 0.90228 0.90375 0.91427 0.92358 0.97630 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.66 11.19 21.65 0.24 -54.42 16 2 C -0.05 -2.60 4.92 84.86 0.42 -2.18 16 3 Si 0.97 44.06 29.59 68.60 2.03 46.09 16 4 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.27 -14.61 9.58 84.03 0.81 -13.80 16 8 H 0.07 3.54 7.88 -2.91 -0.02 3.51 16 9 N -0.61 -30.49 2.99 -699.08 -2.09 -32.59 16 10 C 0.18 8.37 5.30 86.36 0.46 8.83 16 11 C -0.13 -4.38 5.55 30.67 0.17 -4.21 16 12 C 0.16 5.25 2.42 45.02 0.11 5.36 16 13 N -0.71 -17.18 4.96 -442.41 -2.20 -19.38 16 14 C 0.53 13.83 6.89 87.66 0.60 14.44 16 15 O -0.58 -20.50 15.56 -3.04 -0.05 -20.55 16 16 C -0.14 -2.62 1.26 -52.40 -0.07 -2.69 16 17 C 0.09 1.25 6.96 71.98 0.50 1.75 16 18 F -0.21 -3.28 14.57 44.97 0.66 -2.63 16 19 C -0.11 -1.84 6.96 31.12 0.22 -1.62 16 20 C -0.13 -2.04 7.57 31.12 0.24 -1.80 16 21 C -0.12 -2.21 6.97 31.12 0.22 -1.99 16 22 C -0.12 -4.31 5.65 30.67 0.17 -4.14 16 23 C 0.14 6.22 6.52 86.36 0.56 6.78 16 24 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 25 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 26 H 0.06 3.34 6.06 -2.39 -0.01 3.33 16 27 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.06 2.21 7.58 -2.39 -0.02 2.19 16 30 H 0.41 7.25 7.50 -92.71 -0.70 6.56 16 31 H 0.10 1.00 7.04 -2.39 -0.02 0.98 16 32 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 1.46 8.09 -2.39 -0.02 1.44 16 34 H 0.09 1.25 8.06 -2.39 -0.02 1.23 16 35 H 0.10 1.44 6.44 -2.39 -0.02 1.43 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 1.36 8.10 -2.39 -0.02 1.34 16 38 H 0.08 1.82 7.43 -2.39 -0.02 1.80 16 39 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.06 2.40 7.93 -2.39 -0.02 2.38 16 Total: -1.00 -67.15 332.29 3.31 -63.84 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.32 Total: 14.91 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 4.40 Total: 4.72 kcal Atomic # 7 Polarization: -102.34 SS G_CDS: -4.05 Total: -106.38 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.05 Total: -20.55 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.66 Total: -2.63 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -67.15 3.31 -63.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229289308.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.053 kcal (2) G-P(sol) polarization free energy of solvation -67.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds