Wall clock time and date at job start Tue Mar 31 2020 06:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46893 * 109.47595 * 2 1 4 4 C 1.46907 * 109.47021 * 239.99853 * 2 1 3 5 5 C 1.46899 * 109.46862 * 120.00238 * 2 1 3 6 6 C 1.53000 * 109.47541 * 59.58718 * 5 2 1 7 7 H 1.09001 * 109.47125 * 54.20018 * 6 5 2 8 8 C 1.50698 * 109.47282 * 174.20645 * 6 5 2 9 9 H 1.08003 * 119.99884 * 120.00140 * 8 6 5 10 10 C 1.37877 * 119.99928 * 299.99641 * 8 6 5 11 11 N 1.31515 * 119.99834 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 119.99979 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47346 * 59.99924 * 12 10 8 14 14 H 1.48505 * 109.47138 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47047 * 300.00004 * 12 10 8 16 16 O 1.42904 * 109.46772 * 294.20433 * 6 5 2 17 17 C 1.35996 * 116.99878 * 156.50817 * 16 6 5 18 18 C 1.38565 * 120.05817 * 1.91462 * 17 16 6 19 19 C 1.38422 * 119.97645 * 179.97438 * 18 17 16 20 20 F 1.35099 * 119.95346 * 179.97438 * 19 18 17 21 21 C 1.38456 * 120.09299 * 0.02562 * 19 18 17 22 22 C 1.38242 * 120.12051 * 359.97095 * 21 19 18 23 23 C 1.38544 * 120.02325 * 359.79086 * 22 21 19 24 24 O 1.36042 * 120.04683 * 180.22920 * 23 22 21 25 25 H 1.08998 * 109.47258 * 290.83351 * 1 2 3 26 26 H 1.09002 * 109.46933 * 50.82922 * 1 2 3 27 27 H 1.09006 * 109.47368 * 170.83001 * 1 2 3 28 28 H 1.08993 * 109.47358 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47081 * 300.00437 * 3 2 1 30 30 H 1.09008 * 109.47147 * 59.99582 * 3 2 1 31 31 H 1.09002 * 109.47135 * 301.59143 * 4 2 1 32 32 H 1.08996 * 109.47274 * 61.59460 * 4 2 1 33 33 H 1.09002 * 109.46986 * 181.59352 * 4 2 1 34 34 H 1.09009 * 109.47075 * 179.58567 * 5 2 1 35 35 H 1.08996 * 109.47490 * 299.58361 * 5 2 1 36 36 H 0.97000 * 119.99491 * 180.02562 * 11 10 8 37 37 H 1.08005 * 120.01486 * 359.95499 * 18 17 16 38 38 H 1.08006 * 119.93634 * 179.97438 * 21 19 18 39 39 H 1.08002 * 119.98475 * 180.02562 * 22 21 19 40 40 H 0.96692 * 114.00497 * 270.23488 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3849 0.0000 4 6 1.9586 -0.6926 -1.1995 5 6 1.9586 -0.6926 1.1994 6 6 1.4401 -2.1320 1.2046 7 1 1.7102 -2.6189 0.2675 8 6 2.0556 -2.8835 2.3568 9 1 1.4240 -3.3132 3.1202 10 6 3.4250 -3.0225 2.4363 11 7 4.1942 -2.4988 1.5068 12 14 4.1879 -3.9545 3.8641 13 1 3.6847 -5.3516 3.8686 14 1 5.6658 -3.9606 3.7181 15 1 3.8199 -3.2918 5.1410 16 8 0.0181 -2.1256 1.3455 17 6 -0.6523 -3.2181 0.8912 18 6 0.0467 -4.2896 0.3588 19 6 -0.6373 -5.4010 -0.1026 20 9 0.0446 -6.4452 -0.6220 21 6 -2.0195 -5.4437 -0.0334 22 6 -2.7208 -4.3769 0.4970 23 6 -2.0409 -3.2641 0.9648 24 8 -2.7303 -2.2161 1.4912 25 1 -0.3634 0.3655 0.9604 26 1 -0.3633 0.6491 -0.7967 27 1 -0.3634 -1.0146 -0.1638 28 1 3.0487 1.3848 -0.0005 29 1 1.5954 1.8988 -0.8900 30 1 1.5954 1.8988 0.8900 31 1 1.5722 -1.7117 -1.2138 32 1 1.6189 -0.1625 -2.0892 33 1 3.0483 -0.7174 -1.1853 34 1 3.0486 -0.6990 1.1957 35 1 1.6014 -0.1745 2.0894 36 1 5.1576 -2.5969 1.5626 37 1 1.1248 -4.2574 0.3036 38 1 -2.5507 -6.3120 -0.3946 39 1 -3.7989 -4.4127 0.5503 40 1 -2.9845 -1.5465 0.8416 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230291830.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:37 Heat of formation + Delta-G solvation = 6.932509 kcal Electronic energy + Delta-G solvation = -24146.576102 eV Core-core repulsion = 20574.374802 eV Total energy + Delta-G solvation = -3572.201300 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.145 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.69346 -43.44070 -41.11209 -38.77493 -37.21291 -35.04069 -31.92352 -31.19297 -30.40186 -30.30941 -29.66721 -27.91640 -25.29982 -24.31712 -23.34746 -22.35170 -19.74432 -19.29384 -19.10947 -18.55018 -18.35996 -17.90535 -17.53764 -16.96947 -16.67179 -16.20331 -15.92354 -15.58054 -15.21283 -15.10823 -14.84401 -14.77943 -14.41888 -14.21929 -14.09383 -13.98151 -13.84560 -13.66339 -13.44157 -13.23664 -12.64727 -12.55876 -12.44189 -12.05466 -11.97663 -11.74567 -11.40737 -10.99801 -10.20369 -9.72281 -9.03361 -7.97671 -6.09364 0.11010 0.27147 0.31732 2.01517 2.11962 2.19981 2.22966 2.30130 2.32469 2.40500 2.56180 2.93540 3.14076 3.15210 3.17633 3.39026 3.39400 3.41045 3.56796 3.59919 3.65595 3.73215 3.87311 3.91574 3.98417 4.06328 4.09899 4.19474 4.22559 4.55861 4.74214 4.88301 4.94772 5.17314 5.22973 5.33254 5.73986 5.96023 6.12306 6.28172 6.72856 7.11403 7.70316 9.07893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.270 5.270 3 C -0.041 4.041 4 C -0.040 4.040 5 C -0.007 4.007 6 C 0.195 3.805 7 H 0.055 0.945 8 C -0.547 4.547 9 H 0.083 0.917 10 C 0.077 3.923 11 N -0.895 5.895 12 Si 0.913 3.087 13 H -0.266 1.266 14 H -0.278 1.278 15 H -0.267 1.267 16 O -0.314 6.314 17 C 0.146 3.854 18 C -0.219 4.219 19 C 0.131 3.869 20 F -0.134 7.134 21 C -0.181 4.181 22 C -0.082 4.082 23 C 0.051 3.949 24 O -0.480 6.480 25 H 0.118 0.882 26 H 0.101 0.899 27 H 0.125 0.875 28 H 0.117 0.883 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.107 0.893 33 H 0.123 0.877 34 H 0.168 0.832 35 H 0.114 0.886 36 H 0.284 0.716 37 H 0.160 0.840 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.877 12.822 -9.786 17.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 N 0.071 4.929 3 C -0.183 4.183 4 C -0.182 4.182 5 C -0.126 4.126 6 C 0.140 3.860 7 H 0.072 0.928 8 C -0.584 4.584 9 H 0.101 0.899 10 C -0.129 4.129 11 N -0.531 5.531 12 Si 0.738 3.262 13 H -0.191 1.191 14 H -0.202 1.202 15 H -0.192 1.192 16 O -0.228 6.228 17 C 0.099 3.901 18 C -0.238 4.238 19 C 0.111 3.889 20 F -0.113 7.113 21 C -0.200 4.200 22 C -0.101 4.101 23 C 0.005 3.995 24 O -0.288 6.288 25 H 0.136 0.864 26 H 0.120 0.880 27 H 0.143 0.857 28 H 0.135 0.865 29 H 0.128 0.872 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.142 0.858 34 H 0.185 0.815 35 H 0.132 0.868 36 H 0.094 0.906 37 H 0.177 0.823 38 H 0.157 0.843 39 H 0.161 0.839 40 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -5.621 12.683 -9.217 16.655 hybrid contribution 0.797 -0.576 0.246 1.014 sum -4.824 12.107 -8.971 15.821 Atomic orbital electron populations 1.24332 0.77268 1.09180 1.07735 1.46318 1.14891 1.14635 1.17014 1.24015 1.05465 0.80932 1.07862 1.24048 1.06035 1.01799 0.86287 1.25062 1.07766 0.95511 0.84212 1.20563 0.74256 0.90441 1.00746 0.92819 1.21348 0.92353 1.35181 1.09483 0.89918 1.24969 0.96627 0.94325 0.96982 1.69475 1.06853 1.43488 1.33308 0.86187 0.78330 0.80727 0.80909 1.19103 1.20244 1.19218 1.86075 1.23037 1.36380 1.77350 1.18917 0.90502 0.87491 0.93205 1.21406 1.02699 0.93640 1.06056 1.17499 0.89760 0.84832 0.96800 1.91532 1.80069 1.55636 1.84044 1.20958 0.92175 1.01094 1.05743 1.21055 1.00697 0.92174 0.96133 1.17758 0.86674 0.91072 1.03992 1.85016 1.74468 1.32692 1.36604 0.86384 0.88020 0.85677 0.86477 0.87186 0.86764 0.86618 0.87431 0.85804 0.81534 0.86804 0.90622 0.82251 0.84295 0.83891 0.76787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.45 6.92 60.06 0.42 0.86 16 2 N -0.27 2.61 0.05 -395.62 -0.02 2.59 16 3 C -0.04 0.50 8.00 60.06 0.48 0.98 16 4 C -0.04 0.39 7.64 60.07 0.46 0.84 16 5 C -0.01 0.02 3.64 -3.82 -0.01 0.01 16 6 C 0.19 0.18 1.23 -27.88 -0.03 0.14 16 7 H 0.05 0.05 4.12 -51.93 -0.21 -0.17 16 8 C -0.55 -3.80 8.02 -34.44 -0.28 -4.07 16 9 H 0.08 0.79 7.81 -52.48 -0.41 0.38 16 10 C 0.08 0.62 5.29 -17.82 -0.09 0.53 16 11 N -0.89 -6.42 11.29 55.43 0.63 -5.80 16 12 Si 0.91 7.96 29.54 -169.99 -5.02 2.94 16 13 H -0.27 -2.67 7.11 56.52 0.40 -2.27 16 14 H -0.28 -2.61 7.11 56.52 0.40 -2.21 16 15 H -0.27 -2.49 7.11 56.52 0.40 -2.08 16 16 O -0.31 -0.07 6.45 -34.27 -0.22 -0.29 16 17 C 0.15 0.20 5.94 -39.13 -0.23 -0.03 16 18 C -0.22 -0.61 8.70 -39.39 -0.34 -0.96 16 19 C 0.13 0.39 7.30 -39.43 -0.29 0.11 16 20 F -0.13 -0.61 17.26 2.25 0.04 -0.58 16 21 C -0.18 -0.21 10.02 -39.50 -0.40 -0.60 16 22 C -0.08 -0.01 9.98 -39.47 -0.39 -0.41 16 23 C 0.05 0.03 6.72 -39.14 -0.26 -0.23 16 24 O -0.48 0.29 13.29 -34.42 -0.46 -0.17 16 25 H 0.12 -1.15 7.99 -51.93 -0.41 -1.57 16 26 H 0.10 -1.34 8.01 -51.93 -0.42 -1.75 16 27 H 0.13 -1.01 5.04 -51.93 -0.26 -1.27 16 28 H 0.12 -1.39 8.14 -51.93 -0.42 -1.82 16 29 H 0.11 -1.58 8.07 -51.93 -0.42 -1.99 16 30 H 0.11 -1.44 8.14 -51.92 -0.42 -1.86 16 31 H 0.12 -0.88 6.03 -51.93 -0.31 -1.19 16 32 H 0.11 -1.35 8.14 -51.93 -0.42 -1.77 16 33 H 0.12 -1.08 8.13 -51.93 -0.42 -1.50 16 34 H 0.17 -0.25 5.93 -51.92 -0.31 -0.56 16 35 H 0.11 -0.43 8.08 -51.93 -0.42 -0.85 16 36 H 0.28 2.26 8.31 -40.82 -0.34 1.92 16 37 H 0.16 0.64 5.69 -52.48 -0.30 0.34 16 38 H 0.14 -0.06 8.06 -52.48 -0.42 -0.48 16 39 H 0.14 -0.27 8.06 -52.49 -0.42 -0.69 16 40 H 0.38 -2.30 9.06 45.56 0.41 -1.89 16 LS Contribution 321.41 15.07 4.84 4.84 Total: 0.00 -16.64 321.41 -5.92 -22.56 By element: Atomic # 1 Polarization: -18.55 SS G_CDS: -4.73 Total: -23.28 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -0.98 Total: -2.81 kcal Atomic # 7 Polarization: -3.81 SS G_CDS: 0.61 Total: -3.21 kcal Atomic # 8 Polarization: 0.22 SS G_CDS: -0.68 Total: -0.46 kcal Atomic # 9 Polarization: -0.61 SS G_CDS: 0.04 Total: -0.58 kcal Atomic # 14 Polarization: 7.96 SS G_CDS: -5.02 Total: 2.94 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -16.64 -5.92 -22.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230291830.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.490 kcal (2) G-P(sol) polarization free energy of solvation -16.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds