Wall clock time and date at job start Tue Mar 31 2020 06:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46893 * 109.47595 * 2 1 4 4 C 1.46907 * 109.47021 * 239.99853 * 2 1 3 5 5 C 1.46899 * 109.46862 * 120.00238 * 2 1 3 6 6 C 1.53000 * 109.47541 * 59.58718 * 5 2 1 7 7 H 1.09001 * 109.47125 * 54.20018 * 6 5 2 8 8 C 1.50698 * 109.47282 * 174.20645 * 6 5 2 9 9 H 1.08003 * 119.99884 * 120.00140 * 8 6 5 10 10 C 1.37877 * 119.99928 * 299.99641 * 8 6 5 11 11 N 1.31515 * 119.99834 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 119.99979 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47346 * 59.99924 * 12 10 8 14 14 H 1.48505 * 109.47138 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47047 * 300.00004 * 12 10 8 16 16 O 1.42904 * 109.46772 * 294.20433 * 6 5 2 17 17 C 1.35996 * 116.99878 * 156.50817 * 16 6 5 18 18 C 1.38565 * 120.05817 * 1.91462 * 17 16 6 19 19 C 1.38422 * 119.97645 * 179.97438 * 18 17 16 20 20 F 1.35099 * 119.95346 * 179.97438 * 19 18 17 21 21 C 1.38456 * 120.09299 * 0.02562 * 19 18 17 22 22 C 1.38242 * 120.12051 * 359.97095 * 21 19 18 23 23 C 1.38544 * 120.02325 * 359.79086 * 22 21 19 24 24 O 1.36042 * 120.04683 * 180.22920 * 23 22 21 25 25 H 1.08998 * 109.47258 * 290.83351 * 1 2 3 26 26 H 1.09002 * 109.46933 * 50.82922 * 1 2 3 27 27 H 1.09006 * 109.47368 * 170.83001 * 1 2 3 28 28 H 1.08993 * 109.47358 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47081 * 300.00437 * 3 2 1 30 30 H 1.09008 * 109.47147 * 59.99582 * 3 2 1 31 31 H 1.09002 * 109.47135 * 301.59143 * 4 2 1 32 32 H 1.08996 * 109.47274 * 61.59460 * 4 2 1 33 33 H 1.09002 * 109.46986 * 181.59352 * 4 2 1 34 34 H 1.09009 * 109.47075 * 179.58567 * 5 2 1 35 35 H 1.08996 * 109.47490 * 299.58361 * 5 2 1 36 36 H 0.97000 * 119.99491 * 180.02562 * 11 10 8 37 37 H 1.08005 * 120.01486 * 359.95499 * 18 17 16 38 38 H 1.08006 * 119.93634 * 179.97438 * 21 19 18 39 39 H 1.08002 * 119.98475 * 180.02562 * 22 21 19 40 40 H 0.96692 * 114.00497 * 270.23488 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3849 0.0000 4 6 1.9586 -0.6926 -1.1995 5 6 1.9586 -0.6926 1.1994 6 6 1.4401 -2.1320 1.2046 7 1 1.7102 -2.6189 0.2675 8 6 2.0556 -2.8835 2.3568 9 1 1.4240 -3.3132 3.1202 10 6 3.4250 -3.0225 2.4363 11 7 4.1942 -2.4988 1.5068 12 14 4.1879 -3.9545 3.8641 13 1 3.6847 -5.3516 3.8686 14 1 5.6658 -3.9606 3.7181 15 1 3.8199 -3.2918 5.1410 16 8 0.0181 -2.1256 1.3455 17 6 -0.6523 -3.2181 0.8912 18 6 0.0467 -4.2896 0.3588 19 6 -0.6373 -5.4010 -0.1026 20 9 0.0446 -6.4452 -0.6220 21 6 -2.0195 -5.4437 -0.0334 22 6 -2.7208 -4.3769 0.4970 23 6 -2.0409 -3.2641 0.9648 24 8 -2.7303 -2.2161 1.4912 25 1 -0.3634 0.3655 0.9604 26 1 -0.3633 0.6491 -0.7967 27 1 -0.3634 -1.0146 -0.1638 28 1 3.0487 1.3848 -0.0005 29 1 1.5954 1.8988 -0.8900 30 1 1.5954 1.8988 0.8900 31 1 1.5722 -1.7117 -1.2138 32 1 1.6189 -0.1625 -2.0892 33 1 3.0483 -0.7174 -1.1853 34 1 3.0486 -0.6990 1.1957 35 1 1.6014 -0.1745 2.0894 36 1 5.1576 -2.5969 1.5626 37 1 1.1248 -4.2574 0.3036 38 1 -2.5507 -6.3120 -0.3946 39 1 -3.7989 -4.4127 0.5503 40 1 -2.9845 -1.5465 0.8416 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230291830.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:36 Heat of formation + Delta-G solvation = 1.969327 kcal Electronic energy + Delta-G solvation = -24146.791321 eV Core-core repulsion = 20574.374802 eV Total energy + Delta-G solvation = -3572.416520 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.95774 -42.88575 -41.08174 -38.76421 -37.23893 -35.45913 -31.97274 -31.27036 -29.77104 -29.57767 -29.41958 -27.97900 -25.28560 -24.01413 -23.43456 -22.30344 -19.80808 -19.32645 -19.08209 -18.23595 -17.82622 -17.74976 -17.24832 -17.10549 -16.79839 -16.42836 -16.33867 -15.58208 -15.31970 -15.02816 -14.53123 -14.38557 -14.23076 -13.93868 -13.45619 -13.40279 -13.27414 -13.19439 -13.14821 -13.06448 -12.92926 -12.86002 -12.71847 -12.49242 -12.31150 -12.06684 -11.52420 -11.34965 -10.78471 -9.84965 -9.13154 -8.56661 -6.64545 0.00828 0.22690 0.97335 1.29418 1.38970 1.45256 2.07925 2.25258 2.46622 2.75069 2.99877 3.08427 3.13322 3.17160 3.28432 3.77327 3.88514 4.04460 4.06655 4.12252 4.21701 4.26697 4.29745 4.46229 4.50035 4.54605 4.59499 4.71286 4.77596 4.79636 4.86048 4.89223 4.97140 5.13796 5.15040 5.24424 5.46432 5.61826 5.68360 6.12317 6.55057 6.94103 7.11575 8.44641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.258 5.258 3 C -0.043 4.043 4 C -0.043 4.043 5 C 0.015 3.985 6 C 0.197 3.803 7 H 0.055 0.945 8 C -0.554 4.554 9 H 0.049 0.951 10 C 0.062 3.938 11 N -0.887 5.887 12 Si 0.923 3.077 13 H -0.291 1.291 14 H -0.284 1.284 15 H -0.276 1.276 16 O -0.301 6.301 17 C 0.138 3.862 18 C -0.230 4.230 19 C 0.104 3.896 20 F -0.151 7.151 21 C -0.178 4.178 22 C -0.079 4.079 23 C 0.062 3.938 24 O -0.489 6.489 25 H 0.117 0.883 26 H 0.145 0.855 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.144 0.856 30 H 0.121 0.879 31 H 0.091 0.909 32 H 0.149 0.851 33 H 0.113 0.887 34 H 0.148 0.852 35 H 0.119 0.881 36 H 0.277 0.723 37 H 0.138 0.862 38 H 0.155 0.845 39 H 0.170 0.830 40 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.916 15.546 -11.325 20.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 N 0.085 4.915 3 C -0.184 4.184 4 C -0.185 4.185 5 C -0.107 4.107 6 C 0.142 3.858 7 H 0.072 0.928 8 C -0.592 4.592 9 H 0.067 0.933 10 C -0.142 4.142 11 N -0.524 5.524 12 Si 0.752 3.248 13 H -0.217 1.217 14 H -0.210 1.210 15 H -0.201 1.201 16 O -0.215 6.215 17 C 0.091 3.909 18 C -0.249 4.249 19 C 0.084 3.916 20 F -0.129 7.129 21 C -0.197 4.197 22 C -0.097 4.097 23 C 0.016 3.984 24 O -0.301 6.301 25 H 0.135 0.865 26 H 0.163 0.837 27 H 0.121 0.879 28 H 0.131 0.869 29 H 0.163 0.837 30 H 0.140 0.860 31 H 0.109 0.891 32 H 0.167 0.833 33 H 0.131 0.869 34 H 0.166 0.834 35 H 0.137 0.863 36 H 0.087 0.913 37 H 0.156 0.844 38 H 0.172 0.828 39 H 0.187 0.813 40 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -7.666 15.439 -10.773 20.327 hybrid contribution 1.313 -1.402 0.734 2.056 sum -6.353 14.037 -10.039 18.389 Atomic orbital electron populations 1.24419 0.76244 1.08755 1.09417 1.45957 1.15497 1.15614 1.14468 1.24234 1.05451 0.78673 1.09993 1.24122 1.05455 1.01313 0.87566 1.24189 1.06080 0.93257 0.87144 1.20346 0.74419 0.92976 0.98080 0.92784 1.21432 0.91823 1.35781 1.10138 0.93300 1.24929 0.97278 0.95102 0.96899 1.69508 1.06136 1.43969 1.32826 0.86118 0.77742 0.79433 0.81540 1.21718 1.20987 1.20131 1.86120 1.22349 1.35629 1.77416 1.19048 0.91149 0.87360 0.93353 1.21279 1.01796 0.94595 1.07274 1.17776 0.90743 0.84744 0.98305 1.91481 1.80578 1.56365 1.84523 1.21165 0.91238 1.01976 1.05274 1.21344 1.01894 0.91325 0.95123 1.17801 0.86217 0.91674 1.02684 1.84943 1.74053 1.33073 1.38018 0.86468 0.83718 0.87947 0.86881 0.83735 0.86007 0.89054 0.83283 0.86867 0.83411 0.86299 0.91323 0.84385 0.82772 0.81277 0.73648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 1.08 6.92 127.69 0.88 1.96 16 2 N -0.26 5.34 0.05 ******* -0.07 5.27 16 3 C -0.04 1.18 8.00 127.69 1.02 2.20 16 4 C -0.04 0.87 7.64 127.69 0.98 1.84 16 5 C 0.01 -0.11 3.64 86.30 0.31 0.21 16 6 C 0.20 0.67 1.23 29.85 0.04 0.71 16 7 H 0.05 0.22 4.12 -2.39 -0.01 0.21 16 8 C -0.55 -9.25 8.02 25.60 0.21 -9.04 16 9 H 0.05 1.12 7.81 -2.91 -0.02 1.10 16 10 C 0.06 1.19 5.29 84.65 0.45 1.63 16 11 N -0.89 -14.62 11.29 21.45 0.24 -14.37 16 12 Si 0.92 19.04 29.54 68.60 2.03 21.07 16 13 H -0.29 -7.02 7.11 99.48 0.71 -6.32 16 14 H -0.28 -6.10 7.11 99.48 0.71 -5.40 16 15 H -0.28 -5.93 7.11 99.48 0.71 -5.22 16 16 O -0.30 -0.35 6.45 -79.59 -0.51 -0.86 16 17 C 0.14 0.51 5.94 22.56 0.13 0.64 16 18 C -0.23 -1.83 8.70 22.39 0.19 -1.63 16 19 C 0.10 0.82 7.30 22.37 0.16 0.99 16 20 F -0.15 -1.77 17.26 44.97 0.78 -0.99 16 21 C -0.18 -0.43 10.02 22.32 0.22 -0.21 16 22 C -0.08 0.06 9.98 22.34 0.22 0.29 16 23 C 0.06 0.03 6.72 22.56 0.15 0.18 16 24 O -0.49 1.48 13.29 -80.12 -1.06 0.42 16 25 H 0.12 -2.56 7.99 -2.39 -0.02 -2.58 16 26 H 0.14 -4.45 8.01 -2.39 -0.02 -4.47 16 27 H 0.10 -1.76 5.04 -2.38 -0.01 -1.78 16 28 H 0.11 -2.87 8.14 -2.39 -0.02 -2.89 16 29 H 0.14 -4.80 8.07 -2.38 -0.02 -4.81 16 30 H 0.12 -3.39 8.14 -2.38 -0.02 -3.41 16 31 H 0.09 -1.32 6.03 -2.39 -0.01 -1.33 16 32 H 0.15 -4.21 8.14 -2.39 -0.02 -4.23 16 33 H 0.11 -1.96 8.13 -2.39 -0.02 -1.98 16 34 H 0.15 -0.32 5.93 -2.38 -0.01 -0.33 16 35 H 0.12 -0.93 8.08 -2.39 -0.02 -0.95 16 36 H 0.28 4.96 8.31 -92.71 -0.77 4.19 16 37 H 0.14 1.63 5.69 -2.91 -0.02 1.61 16 38 H 0.15 -0.19 8.06 -2.91 -0.02 -0.21 16 39 H 0.17 -1.05 8.06 -2.91 -0.02 -1.07 16 40 H 0.41 -5.99 9.06 -74.06 -0.67 -6.67 16 Total: 0.00 -43.02 321.41 6.76 -36.26 By element: Atomic # 1 Polarization: -46.93 SS G_CDS: 0.39 Total: -46.55 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 4.97 Total: -0.23 kcal Atomic # 7 Polarization: -9.28 SS G_CDS: 0.17 Total: -9.10 kcal Atomic # 8 Polarization: 1.13 SS G_CDS: -1.58 Total: -0.45 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.78 Total: -0.99 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: 2.03 Total: 21.07 kcal Total: -43.02 6.76 -36.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230291830.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.227 kcal (2) G-P(sol) polarization free energy of solvation -43.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds