Wall clock time and date at job start Tue Mar 31 2020 05:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46662 * 2 1 4 4 N 1.46903 * 109.46693 * 180.84576 * 3 2 1 5 5 C 1.46897 * 110.99768 * 299.17403 * 4 3 2 6 6 C 1.50702 * 109.47512 * 293.91355 * 5 4 3 7 7 H 1.08006 * 119.99563 * 355.02622 * 6 5 4 8 8 C 1.37874 * 120.00185 * 175.02975 * 6 5 4 9 9 N 1.31505 * 120.00072 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99616 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47385 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.46890 * 120.00015 * 10 8 6 13 13 H 1.48503 * 109.46637 * 239.99419 * 10 8 6 14 14 C 1.46896 * 111.00374 * 63.13016 * 4 3 2 15 15 C 1.50702 * 109.47372 * 66.04018 * 14 4 3 16 16 C 1.38674 * 120.79353 * 269.98379 * 15 14 4 17 17 C 1.38182 * 119.16418 * 180.02562 * 16 15 14 18 18 N 1.31888 * 120.76121 * 359.74728 * 17 16 15 19 19 C 1.31855 * 121.73182 * 0.52090 * 18 17 16 20 20 C 1.50696 * 119.62075 * 179.75791 * 19 18 17 21 21 F 1.39903 * 109.46858 * 239.72355 * 20 19 18 22 22 F 1.39901 * 109.47311 * 119.72712 * 20 19 18 23 23 C 1.38230 * 120.75786 * 359.47465 * 19 18 17 24 24 H 1.09002 * 109.47012 * 300.00165 * 1 2 3 25 25 H 1.08998 * 109.47427 * 59.99972 * 1 2 3 26 26 H 1.09002 * 109.46960 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47299 * 240.00279 * 2 1 3 28 28 H 1.09000 * 109.47016 * 119.99685 * 2 1 3 29 29 H 1.08994 * 109.47382 * 60.84873 * 3 2 1 30 30 H 1.09003 * 109.47112 * 300.83895 * 3 2 1 31 31 H 1.09000 * 109.47701 * 53.91772 * 5 4 3 32 32 H 1.09006 * 109.46954 * 173.91386 * 5 4 3 33 33 H 0.97006 * 120.00233 * 180.02562 * 9 8 6 34 34 H 1.09009 * 109.47124 * 306.04891 * 14 4 3 35 35 H 1.08992 * 109.47669 * 186.04662 * 14 4 3 36 36 H 1.07999 * 120.41638 * 0.03865 * 16 15 14 37 37 H 1.07990 * 119.61667 * 179.97438 * 17 16 15 38 38 H 1.08999 * 109.47306 * 359.71801 * 20 19 18 39 39 H 1.08003 * 120.41864 * 180.27851 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5088 1.4427 -0.0204 5 6 4.0518 0.7683 1.1663 6 6 3.7112 1.5670 2.3980 7 1 3.2185 2.5234 2.3022 8 6 4.0287 1.0771 3.6470 9 7 4.6282 -0.0875 3.7636 10 14 3.6058 2.0670 5.1737 11 1 2.9391 3.3324 4.7743 12 1 2.6926 1.2773 6.0384 13 1 4.8501 2.3784 5.9220 14 6 4.0182 0.8289 -1.2540 15 6 3.6432 1.6875 -2.4344 16 6 2.4487 1.4844 -3.1089 17 6 2.1387 2.2911 -4.1872 18 7 2.9612 3.2472 -4.5727 19 6 4.1073 3.4656 -3.9585 20 6 5.0136 4.5679 -4.4427 21 9 6.2479 4.0261 -4.8173 22 9 5.2054 5.4987 -3.4160 23 6 4.4844 2.6988 -2.8720 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6891 1.9520 0.8974 30 1 1.6643 1.9607 -0.8824 31 1 3.6181 -0.2284 1.2482 32 1 5.1349 0.6867 1.0741 33 1 4.8513 -0.4324 4.6424 34 1 3.5822 -0.1630 -1.3732 35 1 5.1034 0.7442 -1.1965 36 1 1.7691 0.7058 -2.7952 37 1 1.2106 2.1391 -4.7180 38 1 4.5583 5.0621 -5.3009 39 1 5.4224 2.8853 -2.3702 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231889602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:02 Heat of formation + Delta-G solvation = -69.969586 kcal Electronic energy + Delta-G solvation = -22479.007399 eV Core-core repulsion = 18864.073991 eV Total energy + Delta-G solvation = -3614.933407 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.07835 -47.06826 -40.38188 -37.63377 -33.48869 -32.88656 -32.11516 -31.51569 -27.62655 -26.92944 -26.26088 -24.35264 -22.94642 -22.21334 -21.49193 -19.39498 -17.69364 -17.32158 -17.27219 -16.28883 -16.10860 -15.98902 -15.21461 -15.02175 -14.51015 -14.22583 -14.12150 -13.84290 -13.47442 -13.43908 -13.40731 -13.05965 -12.76260 -12.17338 -12.12422 -11.73300 -11.47747 -11.23438 -11.14696 -11.02847 -10.93807 -10.73058 -10.60032 -10.06133 -9.89633 -9.64352 -9.58574 -9.26938 -9.20656 -8.48518 -7.30405 -6.07977 -4.09065 0.87629 1.20811 3.27832 3.30518 3.35913 3.40687 3.57174 4.04389 4.33993 4.39765 4.66966 4.81088 4.94308 5.01378 5.06199 5.14557 5.24024 5.28236 5.42355 5.45868 5.57129 5.73964 5.79079 5.88918 5.97805 6.00488 6.19150 6.30595 6.38712 6.42158 6.56314 6.64935 6.85187 7.19860 7.32054 7.71134 7.73456 7.98474 8.08163 8.44886 8.98903 9.55549 11.02667 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.016731 B = 0.004597 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.100458 B = 6089.879128 C = 7105.810596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.164 4.164 3 C 0.063 3.937 4 N -0.528 5.528 5 C 0.189 3.811 6 C -0.505 4.505 7 H 0.063 0.937 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.896 3.104 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.080 3.920 15 C -0.014 4.014 16 C -0.147 4.147 17 C 0.096 3.904 18 N -0.469 5.469 19 C 0.041 3.959 20 C 0.327 3.673 21 F -0.196 7.196 22 F -0.192 7.192 23 C -0.111 4.111 24 H 0.055 0.945 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.006 0.994 32 H 0.026 0.974 33 H 0.261 0.739 34 H 0.046 0.954 35 H 0.082 0.918 36 H 0.138 0.862 37 H 0.161 0.839 38 H 0.127 0.873 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.342 3.011 -16.002 16.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.203 4.203 3 C -0.066 4.066 4 N -0.251 5.251 5 C 0.064 3.936 6 C -0.544 4.544 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.048 4.048 15 C -0.023 4.023 16 C -0.167 4.167 17 C -0.062 4.062 18 N -0.178 5.178 19 C -0.097 4.097 20 C 0.272 3.728 21 F -0.177 7.177 22 F -0.173 7.173 23 C -0.132 4.132 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.023 0.977 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.156 0.844 37 H 0.178 0.822 38 H 0.145 0.855 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.268 3.924 -16.526 17.513 hybrid contribution -0.149 -0.991 1.758 2.024 sum -4.418 2.933 -14.767 15.691 Atomic orbital electron populations 1.21656 0.96330 1.00796 1.01312 1.22189 0.95680 1.00219 1.02230 1.22118 0.88215 0.94580 1.01656 1.62417 1.06785 1.54630 1.01285 1.19834 0.94977 0.93130 0.85630 1.21143 1.38438 1.04917 0.89853 0.91863 1.24958 0.95325 0.95060 0.99113 1.69955 1.41679 1.18378 1.23779 0.86474 0.78116 0.80197 0.82860 1.19651 1.21114 1.20993 1.21143 1.01027 0.94066 0.88545 1.20462 0.92755 0.94325 0.94768 1.22262 0.97218 1.00978 0.96249 1.22603 0.98132 0.90806 0.94653 1.67142 1.02693 1.18291 1.29702 1.21363 0.94385 0.98233 0.95752 1.20034 0.79924 0.84202 0.88617 1.93019 1.46000 1.87081 1.91613 1.93047 1.95552 1.66301 1.62447 1.21813 1.01386 0.94507 0.95472 0.92626 0.93532 0.93488 0.93159 0.90294 0.89878 0.92951 0.97664 0.95594 0.92959 0.93604 0.89919 0.84377 0.82230 0.85523 0.84097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.91 37.16 0.37 -1.58 16 2 C -0.16 -2.69 5.25 -26.73 -0.14 -2.83 16 3 C 0.06 1.14 4.83 -3.82 -0.02 1.12 16 4 N -0.53 -10.63 4.69 -237.51 -1.11 -11.75 16 5 C 0.19 4.63 4.49 -4.98 -0.02 4.60 16 6 C -0.50 -13.67 8.40 -34.44 -0.29 -13.96 16 7 H 0.06 1.73 7.30 -52.48 -0.38 1.35 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -25.93 13.29 55.43 0.74 -25.19 16 10 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.08 1.33 4.97 -4.98 -0.02 1.30 16 15 C -0.01 -0.21 4.91 -104.31 -0.51 -0.72 16 16 C -0.15 -1.83 8.07 -39.44 -0.32 -2.14 16 17 C 0.10 1.11 11.18 -17.55 -0.20 0.91 16 18 N -0.47 -6.17 10.25 -9.48 -0.10 -6.27 16 19 C 0.04 0.56 6.28 -82.59 -0.52 0.04 16 20 C 0.33 3.87 5.54 36.00 0.20 4.07 16 21 F -0.20 -2.47 17.25 2.25 0.04 -2.43 16 22 F -0.19 -2.62 17.25 2.25 0.04 -2.58 16 23 C -0.11 -1.63 9.34 -39.44 -0.37 -2.00 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.75 5.80 -51.93 -0.30 0.45 16 28 H 0.08 1.56 6.34 -51.93 -0.33 1.23 16 29 H 0.08 1.70 6.94 -51.93 -0.36 1.33 16 30 H 0.05 0.86 5.97 -51.93 -0.31 0.55 16 31 H 0.01 0.14 6.04 -51.93 -0.31 -0.17 16 32 H 0.03 0.68 7.93 -51.93 -0.41 0.27 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 34 H 0.05 0.72 6.05 -51.92 -0.31 0.41 16 35 H 0.08 1.38 7.89 -51.93 -0.41 0.97 16 36 H 0.14 1.51 7.50 -52.49 -0.39 1.11 16 37 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.13 1.13 8.11 -51.93 -0.42 0.71 16 39 H 0.14 2.06 8.06 -52.48 -0.42 1.64 16 LS Contribution 326.94 15.07 4.93 4.93 Total: -1.00 -29.55 326.94 -7.63 -37.17 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.20 Total: -0.44 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -1.94 Total: -9.72 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: -0.48 Total: -43.21 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 0.08 Total: -5.01 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.55 -7.63 -37.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231889602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.797 kcal (2) G-P(sol) polarization free energy of solvation -29.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds