Wall clock time and date at job start Tue Mar 31 2020 05:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46662 * 2 1 4 4 N 1.46903 * 109.46693 * 180.84576 * 3 2 1 5 5 C 1.46897 * 110.99768 * 299.17403 * 4 3 2 6 6 C 1.50702 * 109.47512 * 293.91355 * 5 4 3 7 7 H 1.08006 * 119.99563 * 355.02622 * 6 5 4 8 8 C 1.37874 * 120.00185 * 175.02975 * 6 5 4 9 9 N 1.31505 * 120.00072 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99616 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47385 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.46890 * 120.00015 * 10 8 6 13 13 H 1.48503 * 109.46637 * 239.99419 * 10 8 6 14 14 C 1.46896 * 111.00374 * 63.13016 * 4 3 2 15 15 C 1.50702 * 109.47372 * 66.04018 * 14 4 3 16 16 C 1.38674 * 120.79353 * 269.98379 * 15 14 4 17 17 C 1.38182 * 119.16418 * 180.02562 * 16 15 14 18 18 N 1.31888 * 120.76121 * 359.74728 * 17 16 15 19 19 C 1.31855 * 121.73182 * 0.52090 * 18 17 16 20 20 C 1.50696 * 119.62075 * 179.75791 * 19 18 17 21 21 F 1.39903 * 109.46858 * 239.72355 * 20 19 18 22 22 F 1.39901 * 109.47311 * 119.72712 * 20 19 18 23 23 C 1.38230 * 120.75786 * 359.47465 * 19 18 17 24 24 H 1.09002 * 109.47012 * 300.00165 * 1 2 3 25 25 H 1.08998 * 109.47427 * 59.99972 * 1 2 3 26 26 H 1.09002 * 109.46960 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47299 * 240.00279 * 2 1 3 28 28 H 1.09000 * 109.47016 * 119.99685 * 2 1 3 29 29 H 1.08994 * 109.47382 * 60.84873 * 3 2 1 30 30 H 1.09003 * 109.47112 * 300.83895 * 3 2 1 31 31 H 1.09000 * 109.47701 * 53.91772 * 5 4 3 32 32 H 1.09006 * 109.46954 * 173.91386 * 5 4 3 33 33 H 0.97006 * 120.00233 * 180.02562 * 9 8 6 34 34 H 1.09009 * 109.47124 * 306.04891 * 14 4 3 35 35 H 1.08992 * 109.47669 * 186.04662 * 14 4 3 36 36 H 1.07999 * 120.41638 * 0.03865 * 16 15 14 37 37 H 1.07990 * 119.61667 * 179.97438 * 17 16 15 38 38 H 1.08999 * 109.47306 * 359.71801 * 20 19 18 39 39 H 1.08003 * 120.41864 * 180.27851 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5088 1.4427 -0.0204 5 6 4.0518 0.7683 1.1663 6 6 3.7112 1.5670 2.3980 7 1 3.2185 2.5234 2.3022 8 6 4.0287 1.0771 3.6470 9 7 4.6282 -0.0875 3.7636 10 14 3.6058 2.0670 5.1737 11 1 2.9391 3.3324 4.7743 12 1 2.6926 1.2773 6.0384 13 1 4.8501 2.3784 5.9220 14 6 4.0182 0.8289 -1.2540 15 6 3.6432 1.6875 -2.4344 16 6 2.4487 1.4844 -3.1089 17 6 2.1387 2.2911 -4.1872 18 7 2.9612 3.2472 -4.5727 19 6 4.1073 3.4656 -3.9585 20 6 5.0136 4.5679 -4.4427 21 9 6.2479 4.0261 -4.8173 22 9 5.2054 5.4987 -3.4160 23 6 4.4844 2.6988 -2.8720 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6891 1.9520 0.8974 30 1 1.6643 1.9607 -0.8824 31 1 3.6181 -0.2284 1.2482 32 1 5.1349 0.6867 1.0741 33 1 4.8513 -0.4324 4.6424 34 1 3.5822 -0.1630 -1.3732 35 1 5.1034 0.7442 -1.1965 36 1 1.7691 0.7058 -2.7952 37 1 1.2106 2.1391 -4.7180 38 1 4.5583 5.0621 -5.3009 39 1 5.4224 2.8853 -2.3702 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231889602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:02 Heat of formation + Delta-G solvation = -87.847988 kcal Electronic energy + Delta-G solvation = -22479.782664 eV Core-core repulsion = 18864.073991 eV Total energy + Delta-G solvation = -3615.708673 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.05859 -48.06197 -41.44321 -39.11968 -35.05017 -34.45559 -33.25505 -32.86703 -29.39104 -28.07511 -27.49714 -25.96548 -24.08986 -23.70858 -22.69402 -20.87757 -18.66383 -18.50544 -18.30504 -18.16203 -17.17807 -17.14743 -16.77814 -16.53630 -15.95532 -15.41997 -15.33889 -15.05053 -14.92361 -14.58698 -14.43985 -14.22744 -14.06397 -13.77145 -13.39754 -13.13522 -12.90632 -12.72112 -12.66039 -12.54445 -12.35481 -12.25129 -12.14134 -11.87412 -11.35311 -11.32007 -10.72260 -10.65796 -10.58923 -10.25989 -8.93735 -8.20687 -6.29323 -0.14500 0.14361 1.38242 1.40115 1.52489 2.36488 2.38622 2.55358 3.12564 3.15902 3.31261 3.44755 3.75658 3.83267 3.99310 4.01515 4.02784 4.12472 4.15782 4.24539 4.46730 4.50678 4.59493 4.68078 4.72861 4.85693 4.90151 5.05615 5.09109 5.18762 5.29048 5.32964 5.43585 5.51301 5.56586 5.66481 6.05562 6.30901 6.59576 6.72044 6.86641 7.39970 8.89844 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.016731 B = 0.004597 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.100458 B = 6089.879128 C = 7105.810596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.156 4.156 3 C 0.067 3.933 4 N -0.541 5.541 5 C 0.205 3.795 6 C -0.517 4.517 7 H 0.056 0.944 8 C 0.006 3.994 9 N -0.932 5.932 10 Si 0.961 3.039 11 H -0.267 1.267 12 H -0.277 1.277 13 H -0.280 1.280 14 C 0.085 3.915 15 C -0.029 4.029 16 C -0.142 4.142 17 C 0.104 3.896 18 N -0.472 5.472 19 C 0.035 3.965 20 C 0.326 3.674 21 F -0.202 7.202 22 F -0.205 7.205 23 C -0.131 4.131 24 H 0.044 0.956 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.036 0.964 29 H 0.054 0.946 30 H 0.078 0.922 31 H -0.013 1.013 32 H -0.003 1.003 33 H 0.263 0.737 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.160 0.840 37 H 0.202 0.798 38 H 0.163 0.837 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.434 3.618 -17.629 19.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.195 4.195 3 C -0.060 4.060 4 N -0.264 5.264 5 C 0.080 3.920 6 C -0.555 4.555 7 H 0.074 0.926 8 C -0.192 4.192 9 N -0.573 5.573 10 Si 0.786 3.214 11 H -0.191 1.191 12 H -0.203 1.203 13 H -0.206 1.206 14 C -0.043 4.043 15 C -0.037 4.037 16 C -0.162 4.162 17 C -0.054 4.054 18 N -0.182 5.182 19 C -0.103 4.103 20 C 0.272 3.728 21 F -0.184 7.184 22 F -0.186 7.186 23 C -0.151 4.151 24 H 0.063 0.937 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.005 0.995 32 H 0.015 0.985 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.177 0.823 37 H 0.218 0.782 38 H 0.180 0.820 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.363 4.540 -18.171 19.781 hybrid contribution 0.493 -1.197 2.175 2.531 sum -5.870 3.343 -15.996 17.364 Atomic orbital electron populations 1.21624 0.93703 1.02018 1.02199 1.22062 0.97925 0.98461 1.01004 1.22080 0.86805 0.95773 1.01387 1.62242 1.08284 1.54670 1.01180 1.19434 0.93140 0.92319 0.87142 1.21412 1.38131 1.04807 0.91186 0.92554 1.25779 0.95155 0.96032 1.02198 1.70067 1.42718 1.19878 1.24597 0.85454 0.77983 0.78866 0.79060 1.19094 1.20307 1.20591 1.21070 1.00389 0.94957 0.87859 1.20281 0.94241 0.94564 0.94630 1.22485 0.96253 1.01379 0.96040 1.23283 0.98851 0.89302 0.93933 1.67253 1.02499 1.18826 1.29579 1.21568 0.94960 0.98414 0.95371 1.20368 0.79486 0.83762 0.89187 1.93003 1.46546 1.87236 1.91595 1.93019 1.95608 1.66696 1.63327 1.21829 1.01377 0.95445 0.96485 0.93658 0.90718 0.92137 0.91362 0.94505 0.92721 0.90362 0.99485 0.98491 0.92765 0.92585 0.91089 0.82292 0.78161 0.82016 0.85377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.91 71.98 0.71 -2.71 16 2 C -0.16 -4.99 5.25 30.60 0.16 -4.82 16 3 C 0.07 2.42 4.83 86.30 0.42 2.84 16 4 N -0.54 -22.29 4.69 -905.35 -4.25 -26.54 16 5 C 0.21 10.56 4.49 85.56 0.38 10.94 16 6 C -0.52 -28.90 8.40 25.60 0.22 -28.69 16 7 H 0.06 3.16 7.30 -2.91 -0.02 3.14 16 8 C 0.01 0.36 5.46 84.66 0.46 0.83 16 9 N -0.93 -55.26 13.29 21.44 0.28 -54.97 16 10 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 13 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 14 C 0.08 2.84 4.97 85.56 0.43 3.27 16 15 C -0.03 -0.81 4.91 -19.67 -0.10 -0.90 16 16 C -0.14 -3.06 8.07 22.36 0.18 -2.88 16 17 C 0.10 1.98 11.18 84.67 0.95 2.93 16 18 N -0.47 -10.97 10.25 -183.89 -1.89 -12.86 16 19 C 0.03 0.89 6.28 42.55 0.27 1.16 16 20 C 0.33 7.27 5.54 71.23 0.39 7.67 16 21 F -0.20 -4.96 17.25 44.97 0.78 -4.19 16 22 F -0.21 -5.47 17.25 44.97 0.78 -4.69 16 23 C -0.13 -3.80 9.34 22.36 0.21 -3.59 16 24 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 1.92 5.80 -2.39 -0.01 1.90 16 28 H 0.04 1.49 6.34 -2.39 -0.02 1.48 16 29 H 0.05 2.26 6.94 -2.39 -0.02 2.24 16 30 H 0.08 2.39 5.97 -2.39 -0.01 2.38 16 31 H -0.01 -0.68 6.04 -2.39 -0.01 -0.69 16 32 H 0.00 -0.17 7.93 -2.38 -0.02 -0.19 16 33 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 34 H 0.06 1.75 6.05 -2.38 -0.01 1.73 16 35 H 0.07 2.49 7.89 -2.39 -0.02 2.47 16 36 H 0.16 2.76 7.50 -2.91 -0.02 2.74 16 37 H 0.20 2.15 8.06 -2.92 -0.02 2.13 16 38 H 0.16 2.46 8.11 -2.39 -0.02 2.44 16 39 H 0.13 3.94 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -65.68 326.94 3.46 -62.22 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 1.06 Total: 8.70 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: 4.68 Total: -13.97 kcal Atomic # 7 Polarization: -88.52 SS G_CDS: -5.85 Total: -94.37 kcal Atomic # 9 Polarization: -10.43 SS G_CDS: 1.55 Total: -8.88 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -65.68 3.46 -62.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231889602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.628 kcal (2) G-P(sol) polarization free energy of solvation -65.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds