Wall clock time and date at job start Tue Mar 31 2020 05:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47273 * 2 1 4 4 C 1.52992 * 109.46987 * 179.97438 * 3 2 1 5 5 N 1.46510 * 109.46861 * 179.97438 * 4 3 2 6 6 C 1.36935 * 119.99916 * 92.66388 * 5 4 3 7 7 H 1.07998 * 119.99632 * 213.34977 * 6 5 4 8 8 C 1.38807 * 120.00350 * 33.07123 * 6 5 4 9 9 N 1.31617 * 120.00325 * 206.89564 * 8 6 5 10 10 Si 1.86799 * 119.99852 * 26.89340 * 8 6 5 11 11 H 1.48506 * 109.47168 * 4.67889 * 10 8 6 12 12 H 1.48501 * 109.47388 * 124.68006 * 10 8 6 13 13 H 1.48501 * 109.47404 * 244.68033 * 10 8 6 14 14 C 1.46504 * 119.99591 * 272.65737 * 5 4 3 15 15 C 1.50690 * 109.47376 * 270.00088 * 14 5 4 16 16 C 1.38669 * 120.79235 * 90.00217 * 15 14 5 17 17 C 1.38179 * 119.16483 * 179.97438 * 16 15 14 18 18 N 1.31888 * 120.76746 * 0.02562 * 17 16 15 19 19 C 1.31855 * 121.72408 * 359.97438 * 18 17 16 20 20 C 1.50695 * 119.61871 * 179.97438 * 19 18 17 21 21 F 1.39904 * 109.47106 * 29.99359 * 20 19 18 22 22 F 1.39897 * 109.47698 * 149.99426 * 20 19 18 23 23 C 1.38220 * 120.76338 * 359.72896 * 19 18 17 24 24 H 1.09000 * 109.47157 * 300.00250 * 1 2 3 25 25 H 1.09004 * 109.47481 * 60.00492 * 1 2 3 26 26 H 1.08998 * 109.47593 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46781 * 239.99364 * 2 1 3 28 28 H 1.09002 * 109.46743 * 119.99490 * 2 1 3 29 29 H 1.08993 * 109.47370 * 59.99418 * 3 2 1 30 30 H 1.09004 * 109.46466 * 300.00130 * 3 2 1 31 31 H 1.09000 * 109.47279 * 59.99850 * 4 3 2 32 32 H 1.09000 * 109.47302 * 299.99065 * 4 3 2 33 33 H 0.96996 * 119.99489 * 359.97438 * 9 8 6 34 34 H 1.08998 * 109.46947 * 30.00361 * 14 5 4 35 35 H 1.09006 * 109.46433 * 149.99924 * 14 5 4 36 36 H 1.07996 * 120.41419 * 359.97438 * 16 15 14 37 37 H 1.08008 * 119.61882 * 180.02562 * 17 16 15 38 38 H 1.09001 * 109.47090 * 269.99941 * 20 19 18 39 39 H 1.08003 * 120.42367 * 180.26666 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4424 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.3380 3.4515 1.1844 7 1 4.1726 4.5141 1.2845 8 6 4.8286 2.7214 2.2581 9 7 4.6115 3.1342 3.4889 10 14 5.7970 1.1528 1.9563 11 1 5.9987 0.9686 0.4966 12 1 7.1169 1.2484 2.6302 13 1 5.0454 -0.0058 2.5022 14 6 4.2475 3.5331 -1.2678 15 6 5.6504 3.3032 -1.7675 16 6 5.9416 2.2312 -2.5975 17 6 7.2396 2.0525 -3.0364 18 7 8.1950 2.8866 -2.6745 19 6 7.9548 3.9163 -1.8868 20 6 9.0825 4.8391 -1.5025 21 9 10.0304 4.8705 -2.5310 22 9 8.5798 6.1276 -1.2923 23 6 6.6796 4.1620 -1.4134 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6766 1.9562 -0.8900 31 1 3.9337 0.9284 -0.8891 32 1 3.9329 0.9288 0.8909 33 1 4.1089 3.9489 3.6455 34 1 3.5343 3.1601 -2.0028 35 1 4.0867 4.6003 -1.1144 36 1 5.1637 1.5445 -2.8970 37 1 7.4746 1.2202 -3.6834 38 1 9.5514 4.4783 -0.5871 39 1 6.4882 5.0096 -0.7720 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231891063.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:50 Heat of formation + Delta-G solvation = -77.543486 kcal Electronic energy + Delta-G solvation = -22701.213378 eV Core-core repulsion = 19085.951542 eV Total energy + Delta-G solvation = -3615.261836 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.04998 -48.06350 -41.21273 -38.43795 -35.62169 -34.56204 -33.08744 -32.92844 -29.85366 -28.00022 -27.59611 -25.16170 -24.28113 -23.23153 -22.02608 -21.70651 -19.43011 -18.56714 -18.45642 -18.30996 -17.19665 -16.89653 -16.66475 -16.25772 -15.96348 -15.68396 -15.36454 -14.98985 -14.86440 -14.77033 -14.41609 -14.18011 -13.89591 -13.73483 -13.59690 -13.40171 -13.12342 -12.83396 -12.61903 -12.25202 -12.06903 -11.92554 -11.86121 -11.60014 -11.40416 -11.19094 -10.70435 -10.63474 -10.49940 -10.15013 -9.10303 -8.51260 -5.56672 -0.03635 0.27192 1.37451 1.48705 1.63358 2.43417 2.47635 2.65957 3.03510 3.07726 3.33238 3.48895 3.82937 3.90756 3.98663 4.09898 4.14337 4.22080 4.23500 4.33379 4.39848 4.47734 4.60522 4.73312 4.79481 4.84915 4.95779 5.01386 5.02740 5.06667 5.15835 5.36889 5.43270 5.47326 5.57335 5.67933 5.85531 6.28579 6.81779 6.90342 7.55422 8.05831 8.80121 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.017849 B = 0.005510 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.353972 B = 5080.560674 C = 5755.873093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C -0.125 4.125 4 C 0.142 3.858 5 N -0.603 5.603 6 C -0.330 4.330 7 H 0.030 0.970 8 C -0.048 4.048 9 N -0.945 5.945 10 Si 1.087 2.913 11 H -0.258 1.258 12 H -0.312 1.312 13 H -0.285 1.285 14 C 0.179 3.821 15 C -0.055 4.055 16 C -0.149 4.149 17 C 0.094 3.906 18 N -0.487 5.487 19 C 0.028 3.972 20 C 0.328 3.672 21 F -0.197 7.197 22 F -0.202 7.202 23 C -0.138 4.138 24 H 0.040 0.960 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.046 0.954 29 H 0.029 0.971 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.024 0.976 33 H 0.253 0.747 34 H 0.089 0.911 35 H 0.051 0.949 36 H 0.165 0.835 37 H 0.195 0.805 38 H 0.153 0.847 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.393 -4.810 -13.829 14.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C -0.165 4.165 4 C 0.018 3.982 5 N -0.324 5.324 6 C -0.460 4.460 7 H 0.048 0.952 8 C -0.246 4.246 9 N -0.585 5.585 10 Si 0.914 3.086 11 H -0.182 1.182 12 H -0.242 1.242 13 H -0.212 1.212 14 C 0.053 3.947 15 C -0.066 4.066 16 C -0.169 4.169 17 C -0.063 4.063 18 N -0.197 5.197 19 C -0.109 4.109 20 C 0.273 3.727 21 F -0.178 7.178 22 F -0.183 7.183 23 C -0.159 4.159 24 H 0.059 0.941 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.182 0.818 37 H 0.211 0.789 38 H 0.170 0.830 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.006 -6.105 -13.392 14.854 hybrid contribution -1.518 2.118 0.363 2.631 sum 0.488 -3.987 -13.029 13.634 Atomic orbital electron populations 1.21726 0.94975 1.02055 1.01571 1.21512 0.96691 0.95871 1.02032 1.21995 0.96695 0.96942 1.00869 1.21230 0.93394 0.84728 0.98836 1.44296 1.74479 1.12578 1.01031 1.19840 1.41638 0.93957 0.90579 0.95237 1.27080 0.98677 1.06764 0.92087 1.70977 1.42147 1.23799 1.21579 0.83410 0.75058 0.73722 0.76363 1.18212 1.24173 1.21210 1.20109 0.89597 0.97196 0.87763 1.21597 0.99169 0.93469 0.92349 1.22452 0.99220 0.97853 0.97375 1.23261 0.88273 0.97283 0.97480 1.67262 1.37463 1.03486 1.11526 1.21677 0.94014 0.96550 0.98668 1.20293 0.83522 0.78104 0.90751 1.92979 1.65555 1.96466 1.62811 1.92987 1.88477 1.41470 1.95388 1.21752 0.92870 1.01201 1.00077 0.94100 0.91983 0.91486 0.90177 0.93484 0.95226 0.91388 0.91154 0.95813 0.93775 0.89278 0.93080 0.81792 0.78859 0.82995 0.85600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.91 71.98 0.71 -2.55 16 2 C -0.12 -3.22 5.93 30.59 0.18 -3.04 16 3 C -0.13 -4.12 5.54 30.59 0.17 -3.96 16 4 C 0.14 5.32 4.15 86.37 0.36 5.68 16 5 N -0.60 -25.52 2.13 -706.34 -1.50 -27.02 16 6 C -0.33 -17.51 9.77 84.03 0.82 -16.68 16 7 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 8 C -0.05 -2.72 5.23 84.86 0.44 -2.28 16 9 N -0.94 -58.15 13.71 21.65 0.30 -57.85 16 10 Si 1.09 51.73 25.43 68.60 1.74 53.47 16 11 H -0.26 -11.03 6.57 99.48 0.65 -10.37 16 12 H -0.31 -15.35 7.11 99.48 0.71 -14.64 16 13 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 14 C 0.18 6.17 5.85 85.63 0.50 6.67 16 15 C -0.05 -1.81 5.50 -19.67 -0.11 -1.92 16 16 C -0.15 -3.97 9.82 22.36 0.22 -3.75 16 17 C 0.09 2.46 11.18 84.67 0.95 3.41 16 18 N -0.49 -15.42 9.96 -183.89 -1.83 -17.26 16 19 C 0.03 0.94 6.58 42.55 0.28 1.22 16 20 C 0.33 9.49 5.72 71.23 0.41 9.90 16 21 F -0.20 -5.95 17.06 44.97 0.77 -5.19 16 22 F -0.20 -6.24 16.46 44.97 0.74 -5.50 16 23 C -0.14 -4.86 9.14 22.36 0.20 -4.66 16 24 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.07 2.17 8.09 -2.39 -0.02 2.15 16 32 H 0.02 1.01 3.48 -2.39 -0.01 1.00 16 33 H 0.25 15.70 8.73 -92.71 -0.81 14.89 16 34 H 0.09 2.47 8.03 -2.39 -0.02 2.45 16 35 H 0.05 1.87 8.00 -2.38 -0.02 1.85 16 36 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 37 H 0.19 3.40 8.06 -2.91 -0.02 3.38 16 38 H 0.15 3.55 8.14 -2.39 -0.02 3.53 16 39 H 0.13 4.68 7.59 -2.91 -0.02 4.66 16 Total: -1.00 -66.55 333.10 6.30 -60.25 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.94 Total: 11.05 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 5.14 Total: -11.96 kcal Atomic # 7 Polarization: -99.09 SS G_CDS: -3.04 Total: -102.13 kcal Atomic # 9 Polarization: -12.19 SS G_CDS: 1.51 Total: -10.68 kcal Atomic # 14 Polarization: 51.73 SS G_CDS: 1.74 Total: 53.47 kcal Total: -66.55 6.30 -60.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231891063.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.293 kcal (2) G-P(sol) polarization free energy of solvation -66.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds