Wall clock time and date at job start Tue Mar 31 2020 05:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46786 * 2 1 4 4 N 1.46901 * 109.47265 * 185.82853 * 3 2 1 5 5 C 1.46895 * 110.99974 * 290.74284 * 4 3 2 6 6 C 1.50707 * 109.47259 * 75.00683 * 5 4 3 7 7 H 1.08001 * 119.99890 * 5.20483 * 6 5 4 8 8 C 1.37878 * 119.99917 * 185.19982 * 6 5 4 9 9 N 1.31512 * 119.99925 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99879 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46647 * 60.00063 * 10 8 6 12 12 H 1.48499 * 109.47002 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47062 * 300.00311 * 10 8 6 14 14 C 1.46899 * 110.99997 * 166.78672 * 4 3 2 15 15 C 1.50703 * 109.46986 * 299.15002 * 14 4 3 16 16 C 1.38186 * 120.00030 * 266.64689 * 15 14 4 17 17 C 1.38380 * 120.06903 * 179.97438 * 16 15 14 18 18 F 1.35102 * 119.95639 * 180.02562 * 17 16 15 19 19 C 1.38698 * 120.07898 * 0.03061 * 17 16 15 20 20 F 1.35103 * 119.99551 * 180.02562 * 19 17 16 21 21 C 1.38281 * 120.00660 * 359.97438 * 19 17 16 22 22 C 1.38847 * 120.00271 * 86.62897 * 15 14 4 23 23 N 1.39817 * 120.04115 * 359.74695 * 22 15 14 24 24 H 1.09006 * 109.46764 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47469 * 299.99860 * 1 2 3 26 26 H 1.09001 * 109.47060 * 60.00547 * 1 2 3 27 27 H 1.08999 * 109.46997 * 240.00301 * 2 1 3 28 28 H 1.09001 * 109.47060 * 119.99453 * 2 1 3 29 29 H 1.09002 * 109.47009 * 65.83133 * 3 2 1 30 30 H 1.09005 * 109.47316 * 305.83248 * 3 2 1 31 31 H 1.09000 * 109.47289 * 195.00622 * 5 4 3 32 32 H 1.09001 * 109.47521 * 315.00473 * 5 4 3 33 33 H 0.97002 * 120.00074 * 179.97438 * 9 8 6 34 34 H 1.08997 * 109.46857 * 179.15497 * 14 4 3 35 35 H 1.08992 * 109.47114 * 59.15172 * 14 4 3 36 36 H 1.07997 * 119.96269 * 359.97438 * 16 15 14 37 37 H 1.08004 * 120.03966 * 180.02562 * 21 19 17 38 38 H 0.97001 * 119.99749 * 0.02562 * 23 22 15 39 39 H 0.97000 * 119.99911 * 179.97438 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5022 1.4451 -0.1406 5 6 4.1483 0.9171 1.0684 6 6 3.9908 -0.5812 1.1086 7 1 3.5383 -1.0992 0.2760 8 6 4.4246 -1.2906 2.2084 9 7 4.9753 -0.6598 3.2225 10 14 4.2288 -3.1477 2.2587 11 1 4.9711 -3.7544 1.1246 12 1 4.7697 -3.6679 3.5400 13 1 2.7894 -3.4967 2.1514 14 6 3.9983 2.7909 -0.4577 15 6 3.4036 3.2507 -1.7639 16 6 4.0885 3.0431 -2.9460 17 6 3.5436 3.4642 -4.1462 18 9 4.2149 3.2597 -5.3006 19 6 2.3090 4.0961 -4.1654 20 9 1.7783 4.5060 -5.3383 21 6 1.6209 4.3055 -2.9844 22 6 2.1673 3.8824 -1.7797 23 7 1.4709 4.0878 -0.5848 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7643 1.9253 0.9376 30 1 1.5938 1.9857 -0.8332 31 1 5.2082 1.1708 1.0542 32 1 3.6816 1.3553 1.9506 33 1 5.2802 -1.1588 3.9964 34 1 5.0848 2.7672 -0.5416 35 1 3.7100 3.4806 0.3355 36 1 5.0502 2.5518 -2.9330 37 1 0.6593 4.7971 -2.9988 38 1 1.8516 3.7892 0.2559 39 1 0.6074 4.5296 -0.5965 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233381033.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:59 Heat of formation + Delta-G solvation = -58.079453 kcal Electronic energy + Delta-G solvation = -22859.317394 eV Core-core repulsion = 19244.899582 eV Total energy + Delta-G solvation = -3614.417812 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.26621 -48.30758 -39.84290 -36.86120 -34.29178 -32.88070 -32.63780 -30.80862 -28.59376 -27.19345 -26.03770 -24.18546 -22.85384 -21.60773 -21.04746 -19.85771 -17.95350 -17.78556 -16.97489 -16.26966 -16.14955 -15.56416 -15.37544 -15.03913 -14.75505 -14.67984 -14.29187 -14.02686 -13.87858 -13.76412 -12.94990 -12.78434 -12.58023 -12.26784 -12.02203 -11.89098 -11.56241 -11.18164 -11.11265 -11.02894 -10.68046 -10.63643 -10.29952 -10.12860 -10.01162 -9.41837 -9.14874 -8.82157 -8.41733 -7.56822 -7.30792 -6.06085 -4.04080 1.08024 1.28831 3.31044 3.35743 3.38570 3.49633 3.64825 4.09301 4.39627 4.50858 4.66909 4.84204 5.01522 5.18835 5.27774 5.49195 5.60411 5.72182 5.77164 5.86018 5.90074 5.98089 6.03511 6.11954 6.14151 6.21257 6.46696 6.52337 6.57608 6.79836 6.96144 7.12837 7.26000 7.30744 7.41489 7.63955 7.78823 8.05472 8.12049 8.48146 9.01018 9.56811 11.04211 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.021770 B = 0.004496 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.866079 B = 6226.938789 C = 6526.424819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C 0.062 3.938 4 N -0.531 5.531 5 C 0.191 3.809 6 C -0.502 4.502 7 H 0.073 0.927 8 C 0.054 3.946 9 N -0.900 5.900 10 Si 0.893 3.107 11 H -0.276 1.276 12 H -0.289 1.289 13 H -0.276 1.276 14 C 0.098 3.902 15 C -0.122 4.122 16 C -0.058 4.058 17 C 0.003 3.997 18 F -0.139 7.139 19 C 0.108 3.892 20 F -0.134 7.134 21 C -0.215 4.215 22 C 0.244 3.756 23 N -0.868 5.868 24 H 0.047 0.953 25 H 0.044 0.956 26 H 0.040 0.960 27 H 0.059 0.941 28 H 0.103 0.897 29 H 0.015 0.985 30 H 0.066 0.934 31 H 0.025 0.975 32 H -0.003 1.003 33 H 0.261 0.739 34 H 0.084 0.916 35 H 0.029 0.971 36 H 0.147 0.853 37 H 0.139 0.861 38 H 0.407 0.593 39 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.009 10.255 -8.542 15.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C -0.066 4.066 4 N -0.256 5.256 5 C 0.066 3.934 6 C -0.540 4.540 7 H 0.091 0.909 8 C -0.147 4.147 9 N -0.539 5.539 10 Si 0.721 3.279 11 H -0.201 1.201 12 H -0.215 1.215 13 H -0.202 1.202 14 C -0.030 4.030 15 C -0.127 4.127 16 C -0.078 4.078 17 C -0.018 4.018 18 F -0.118 7.118 19 C 0.087 3.913 20 F -0.113 7.113 21 C -0.239 4.239 22 C 0.137 3.863 23 N -0.409 5.409 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.122 0.878 29 H 0.033 0.967 30 H 0.084 0.916 31 H 0.043 0.957 32 H 0.015 0.985 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.047 0.953 36 H 0.165 0.835 37 H 0.157 0.843 38 H 0.240 0.760 39 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -6.768 9.913 -8.820 14.895 hybrid contribution -0.485 -0.380 0.704 0.936 sum -7.252 9.533 -8.115 14.468 Atomic orbital electron populations 1.21799 0.97997 1.00641 1.00203 1.21953 0.92546 0.97198 1.05023 1.22267 0.88676 0.97653 0.98011 1.62256 1.04838 1.17845 1.40654 1.19803 0.93895 0.95615 0.84060 1.21273 1.38776 0.91402 1.02590 0.90935 1.24983 0.95524 0.98470 0.95719 1.69941 1.41155 1.35772 1.07054 0.86629 0.78504 0.85555 0.77194 1.20149 1.21458 1.20200 1.20886 1.00040 0.91185 0.90924 1.19370 0.94265 1.02758 0.96290 1.20734 1.00822 0.97088 0.89118 1.17358 0.92542 1.08897 0.83050 1.91472 1.79588 1.93802 1.46904 1.17256 0.92170 1.00144 0.81737 1.91490 1.85981 1.88323 1.45488 1.20219 1.02934 1.11084 0.89618 1.17267 0.90599 0.92131 0.86293 1.42957 1.23718 1.67817 1.06425 0.93393 0.93672 0.94114 0.92189 0.87834 0.96675 0.91617 0.95698 0.98513 0.92923 0.89775 0.95328 0.83530 0.84334 0.76046 0.77400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.91 37.16 0.37 -1.90 16 2 C -0.13 -2.43 4.58 -26.73 -0.12 -2.55 16 3 C 0.06 1.09 3.47 -3.82 -0.01 1.08 16 4 N -0.53 -10.35 4.54 -237.51 -1.08 -11.43 16 5 C 0.19 4.57 4.75 -4.98 -0.02 4.55 16 6 C -0.50 -13.08 6.67 -34.44 -0.23 -13.31 16 7 H 0.07 1.88 5.92 -52.49 -0.31 1.57 16 8 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 9 N -0.90 -25.57 13.29 55.43 0.74 -24.84 16 10 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 C 0.10 1.57 4.88 -4.98 -0.02 1.54 16 15 C -0.12 -1.73 4.89 -104.41 -0.51 -2.24 16 16 C -0.06 -0.82 9.66 -39.55 -0.38 -1.20 16 17 C 0.00 0.05 7.30 -39.36 -0.29 -0.24 16 18 F -0.14 -2.12 17.18 2.25 0.04 -2.09 16 19 C 0.11 1.48 7.30 -39.40 -0.29 1.19 16 20 F -0.13 -1.89 17.18 2.25 0.04 -1.85 16 21 C -0.21 -2.57 9.87 -39.33 -0.39 -2.96 16 22 C 0.24 3.05 5.33 -83.75 -0.45 2.61 16 23 N -0.87 -8.97 7.55 32.42 0.24 -8.73 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 1.18 7.80 -51.93 -0.41 0.77 16 28 H 0.10 2.28 5.43 -51.93 -0.28 2.00 16 29 H 0.02 0.27 7.10 -51.93 -0.37 -0.10 16 30 H 0.07 1.04 4.46 -51.93 -0.23 0.81 16 31 H 0.02 0.64 7.83 -51.93 -0.41 0.23 16 32 H 0.00 -0.08 7.84 -51.93 -0.41 -0.48 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.08 1.34 7.88 -51.93 -0.41 0.93 16 35 H 0.03 0.44 6.73 -51.93 -0.35 0.09 16 36 H 0.15 1.95 8.06 -52.49 -0.42 1.53 16 37 H 0.14 1.33 8.06 -52.48 -0.42 0.90 16 38 H 0.41 4.61 5.09 -40.82 -0.21 4.41 16 39 H 0.40 3.04 8.84 -40.82 -0.36 2.67 16 LS Contribution 318.42 15.07 4.80 4.80 Total: -1.00 -28.23 318.42 -7.67 -35.90 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -4.99 Total: 4.40 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -2.44 Total: -12.06 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: -0.10 Total: -44.99 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.08 Total: -3.93 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.23 -7.67 -35.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233381033.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.178 kcal (2) G-P(sol) polarization free energy of solvation -28.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds