Wall clock time and date at job start Tue Mar 31 2020 05:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46786 * 2 1 4 4 N 1.46901 * 109.47265 * 185.82853 * 3 2 1 5 5 C 1.46895 * 110.99974 * 290.74284 * 4 3 2 6 6 C 1.50707 * 109.47259 * 75.00683 * 5 4 3 7 7 H 1.08001 * 119.99890 * 5.20483 * 6 5 4 8 8 C 1.37878 * 119.99917 * 185.19982 * 6 5 4 9 9 N 1.31512 * 119.99925 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99879 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46647 * 60.00063 * 10 8 6 12 12 H 1.48499 * 109.47002 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47062 * 300.00311 * 10 8 6 14 14 C 1.46899 * 110.99997 * 166.78672 * 4 3 2 15 15 C 1.50703 * 109.46986 * 299.15002 * 14 4 3 16 16 C 1.38186 * 120.00030 * 266.64689 * 15 14 4 17 17 C 1.38380 * 120.06903 * 179.97438 * 16 15 14 18 18 F 1.35102 * 119.95639 * 180.02562 * 17 16 15 19 19 C 1.38698 * 120.07898 * 0.03061 * 17 16 15 20 20 F 1.35103 * 119.99551 * 180.02562 * 19 17 16 21 21 C 1.38281 * 120.00660 * 359.97438 * 19 17 16 22 22 C 1.38847 * 120.00271 * 86.62897 * 15 14 4 23 23 N 1.39817 * 120.04115 * 359.74695 * 22 15 14 24 24 H 1.09006 * 109.46764 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47469 * 299.99860 * 1 2 3 26 26 H 1.09001 * 109.47060 * 60.00547 * 1 2 3 27 27 H 1.08999 * 109.46997 * 240.00301 * 2 1 3 28 28 H 1.09001 * 109.47060 * 119.99453 * 2 1 3 29 29 H 1.09002 * 109.47009 * 65.83133 * 3 2 1 30 30 H 1.09005 * 109.47316 * 305.83248 * 3 2 1 31 31 H 1.09000 * 109.47289 * 195.00622 * 5 4 3 32 32 H 1.09001 * 109.47521 * 315.00473 * 5 4 3 33 33 H 0.97002 * 120.00074 * 179.97438 * 9 8 6 34 34 H 1.08997 * 109.46857 * 179.15497 * 14 4 3 35 35 H 1.08992 * 109.47114 * 59.15172 * 14 4 3 36 36 H 1.07997 * 119.96269 * 359.97438 * 16 15 14 37 37 H 1.08004 * 120.03966 * 180.02562 * 21 19 17 38 38 H 0.97001 * 119.99749 * 0.02562 * 23 22 15 39 39 H 0.97000 * 119.99911 * 179.97438 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5022 1.4451 -0.1406 5 6 4.1483 0.9171 1.0684 6 6 3.9908 -0.5812 1.1086 7 1 3.5383 -1.0992 0.2760 8 6 4.4246 -1.2906 2.2084 9 7 4.9753 -0.6598 3.2225 10 14 4.2288 -3.1477 2.2587 11 1 4.9711 -3.7544 1.1246 12 1 4.7697 -3.6679 3.5400 13 1 2.7894 -3.4967 2.1514 14 6 3.9983 2.7909 -0.4577 15 6 3.4036 3.2507 -1.7639 16 6 4.0885 3.0431 -2.9460 17 6 3.5436 3.4642 -4.1462 18 9 4.2149 3.2597 -5.3006 19 6 2.3090 4.0961 -4.1654 20 9 1.7783 4.5060 -5.3383 21 6 1.6209 4.3055 -2.9844 22 6 2.1673 3.8824 -1.7797 23 7 1.4709 4.0878 -0.5848 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7643 1.9253 0.9376 30 1 1.5938 1.9857 -0.8332 31 1 5.2082 1.1708 1.0542 32 1 3.6816 1.3553 1.9506 33 1 5.2802 -1.1588 3.9964 34 1 5.0848 2.7672 -0.5416 35 1 3.7100 3.4806 0.3355 36 1 5.0502 2.5518 -2.9330 37 1 0.6593 4.7971 -2.9988 38 1 1.8516 3.7892 0.2559 39 1 0.6074 4.5296 -0.5965 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233381033.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:59 Heat of formation + Delta-G solvation = -75.176683 kcal Electronic energy + Delta-G solvation = -22860.058785 eV Core-core repulsion = 19244.899582 eV Total energy + Delta-G solvation = -3615.159204 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.36411 -49.42565 -40.97627 -38.32704 -35.32882 -34.63333 -34.16277 -32.11598 -29.74396 -28.91467 -27.31603 -25.72703 -23.96067 -23.18844 -22.33363 -21.32719 -19.00465 -18.83485 -18.46018 -17.85625 -17.27364 -16.85962 -16.55134 -16.40677 -16.21934 -15.87955 -15.72762 -15.43439 -15.11828 -14.88725 -14.38086 -14.10958 -13.87038 -13.60880 -13.59803 -13.18996 -13.02773 -12.77296 -12.66305 -12.58130 -12.29069 -12.20760 -11.71604 -11.60959 -11.39817 -11.13568 -10.87748 -10.46017 -9.89252 -8.96985 -8.51288 -8.12075 -6.15930 0.00634 0.23795 1.43954 1.45163 1.52530 2.39104 2.47610 2.68020 3.06451 3.19754 3.44402 3.46090 3.60372 3.81267 4.14739 4.27067 4.33081 4.44999 4.48000 4.65927 4.78478 4.79766 4.87556 4.88574 4.91448 4.95025 5.09664 5.20204 5.27705 5.35386 5.37646 5.54562 5.73985 5.76107 5.82336 6.15436 6.34315 6.44766 6.69495 6.85106 6.96114 7.48773 8.97334 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.021770 B = 0.004496 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.866079 B = 6226.938789 C = 6526.424819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.130 4.130 3 C 0.067 3.933 4 N -0.540 5.540 5 C 0.206 3.794 6 C -0.503 4.503 7 H 0.071 0.929 8 C 0.003 3.997 9 N -0.935 5.935 10 Si 0.953 3.047 11 H -0.273 1.273 12 H -0.288 1.288 13 H -0.268 1.268 14 C 0.100 3.900 15 C -0.136 4.136 16 C -0.059 4.059 17 C -0.015 4.015 18 F -0.148 7.148 19 C 0.106 3.894 20 F -0.136 7.136 21 C -0.201 4.201 22 C 0.251 3.749 23 N -0.856 5.856 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.018 0.982 30 H 0.090 0.910 31 H 0.001 0.999 32 H -0.027 1.027 33 H 0.261 0.739 34 H 0.078 0.922 35 H 0.040 0.960 36 H 0.147 0.853 37 H 0.170 0.830 38 H 0.404 0.596 39 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.064 10.792 -9.292 16.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.167 4.167 3 C -0.060 4.060 4 N -0.265 5.265 5 C 0.080 3.920 6 C -0.541 4.541 7 H 0.089 0.911 8 C -0.194 4.194 9 N -0.577 5.577 10 Si 0.779 3.221 11 H -0.198 1.198 12 H -0.214 1.214 13 H -0.193 1.193 14 C -0.027 4.027 15 C -0.141 4.141 16 C -0.079 4.079 17 C -0.037 4.037 18 F -0.127 7.127 19 C 0.085 3.915 20 F -0.115 7.115 21 C -0.225 4.225 22 C 0.143 3.857 23 N -0.397 5.397 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.036 0.964 30 H 0.108 0.892 31 H 0.019 0.981 32 H -0.009 1.009 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.164 0.836 37 H 0.188 0.812 38 H 0.236 0.764 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -8.859 10.468 -9.581 16.729 hybrid contribution 0.128 -0.469 0.900 1.023 sum -8.731 10.000 -8.681 15.862 Atomic orbital electron populations 1.21710 0.94984 1.01516 1.01591 1.21838 0.95266 0.97278 1.02366 1.22296 0.87385 0.97338 0.99016 1.62147 1.05971 1.20334 1.38013 1.19443 0.92633 0.94808 0.85077 1.21562 1.37661 0.92625 1.02270 0.91089 1.25734 0.95492 1.02638 0.95545 1.70060 1.42617 1.37298 1.07700 0.85681 0.78780 0.80628 0.77054 1.19832 1.21376 1.19262 1.20841 0.99901 0.89616 0.92388 1.19174 0.95424 1.04437 0.95088 1.20743 1.00948 0.96993 0.89199 1.17484 0.93258 1.10190 0.82808 1.91443 1.79908 1.94011 1.47339 1.17419 0.91946 0.99870 0.82249 1.91487 1.85918 1.88309 1.45780 1.20434 1.03681 1.10028 0.88364 1.17274 0.89911 0.91323 0.87242 1.42933 1.24179 1.67131 1.05481 0.92907 0.92770 0.92128 0.93637 0.91544 0.96438 0.89224 0.98075 1.00925 0.93058 0.90402 0.94208 0.83572 0.81225 0.76395 0.75426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.91 71.98 0.71 -3.21 16 2 C -0.13 -4.73 4.58 30.60 0.14 -4.59 16 3 C 0.07 2.28 3.47 86.30 0.30 2.58 16 4 N -0.54 -21.02 4.54 -905.36 -4.11 -25.12 16 5 C 0.21 10.15 4.75 85.56 0.41 10.55 16 6 C -0.50 -26.69 6.67 25.60 0.17 -26.52 16 7 H 0.07 3.73 5.92 -2.91 -0.02 3.71 16 8 C 0.00 0.18 5.46 84.66 0.46 0.65 16 9 N -0.94 -54.36 13.29 21.45 0.28 -54.07 16 10 Si 0.95 43.26 29.54 68.60 2.03 45.29 16 11 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 13 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 14 C 0.10 3.16 4.88 85.56 0.42 3.58 16 15 C -0.14 -3.67 4.89 -19.73 -0.10 -3.77 16 16 C -0.06 -1.62 9.66 22.29 0.22 -1.41 16 17 C -0.02 -0.43 7.30 22.41 0.16 -0.27 16 18 F -0.15 -4.47 17.18 44.97 0.77 -3.70 16 19 C 0.11 2.68 7.30 22.39 0.16 2.84 16 20 F -0.14 -3.54 17.18 44.97 0.77 -2.77 16 21 C -0.20 -4.11 9.87 22.44 0.22 -3.89 16 22 C 0.25 5.54 5.33 38.17 0.20 5.74 16 23 N -0.86 -14.82 7.55 -51.34 -0.39 -15.21 16 24 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 25 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.04 1.76 7.80 -2.39 -0.02 1.74 16 28 H 0.07 2.93 5.43 -2.39 -0.01 2.92 16 29 H 0.02 0.59 7.10 -2.39 -0.02 0.57 16 30 H 0.09 2.60 4.46 -2.38 -0.01 2.59 16 31 H 0.00 0.06 7.83 -2.39 -0.02 0.04 16 32 H -0.03 -1.44 7.84 -2.39 -0.02 -1.45 16 33 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 34 H 0.08 2.53 7.88 -2.39 -0.02 2.51 16 35 H 0.04 1.17 6.73 -2.39 -0.02 1.16 16 36 H 0.15 3.93 8.06 -2.91 -0.02 3.90 16 37 H 0.17 2.41 8.06 -2.91 -0.02 2.38 16 38 H 0.40 8.06 5.09 -92.71 -0.47 7.59 16 39 H 0.41 4.58 8.84 -92.71 -0.82 3.76 16 Total: -1.00 -61.28 318.42 2.65 -58.63 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -0.19 Total: 14.67 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: 3.48 Total: -17.73 kcal Atomic # 7 Polarization: -90.19 SS G_CDS: -4.21 Total: -94.40 kcal Atomic # 9 Polarization: -8.01 SS G_CDS: 1.55 Total: -6.47 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -61.28 2.65 -58.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233381033.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.544 kcal (2) G-P(sol) polarization free energy of solvation -61.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds