Wall clock time and date at job start Tue Mar 31 2020 05:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46832 * 2 1 4 4 C 1.52999 * 109.46966 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47396 * 187.30232 * 4 3 2 6 6 C 1.36938 * 120.00163 * 279.61972 * 5 4 3 7 7 H 1.07998 * 119.99796 * 15.48046 * 6 5 4 8 8 C 1.38809 * 119.99847 * 195.49297 * 6 5 4 9 9 N 1.31619 * 120.00610 * 32.04060 * 8 6 5 10 10 Si 1.86806 * 119.99646 * 212.04294 * 8 6 5 11 11 H 1.48502 * 109.47113 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47036 * 119.99736 * 10 8 6 13 13 H 1.48499 * 109.47062 * 239.99580 * 10 8 6 14 14 C 1.46501 * 120.00080 * 99.61238 * 5 4 3 15 15 C 1.50697 * 109.47202 * 259.37702 * 14 5 4 16 16 C 1.38175 * 120.00501 * 264.36879 * 15 14 5 17 17 C 1.38378 * 120.07606 * 179.70551 * 16 15 14 18 18 F 1.35095 * 119.96234 * 180.30262 * 17 16 15 19 19 C 1.38705 * 120.07624 * 0.55142 * 17 16 15 20 20 F 1.35093 * 119.99718 * 179.72878 * 19 17 16 21 21 C 1.38289 * 120.00205 * 359.44989 * 19 17 16 22 22 C 1.38857 * 120.00152 * 84.35089 * 15 14 5 23 23 N 1.39811 * 120.04017 * 0.03968 * 22 15 14 24 24 H 1.08993 * 109.47597 * 300.00327 * 1 2 3 25 25 H 1.09006 * 109.47075 * 60.00160 * 1 2 3 26 26 H 1.09000 * 109.47114 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47146 * 239.99945 * 2 1 3 28 28 H 1.08997 * 109.46813 * 119.99915 * 2 1 3 29 29 H 1.09004 * 109.47208 * 59.99952 * 3 2 1 30 30 H 1.08997 * 109.47352 * 299.99585 * 3 2 1 31 31 H 1.08999 * 109.47319 * 67.29847 * 4 3 2 32 32 H 1.09007 * 109.47400 * 307.30544 * 4 3 2 33 33 H 0.96995 * 120.00034 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.47356 * 139.37369 * 14 5 4 35 35 H 1.09005 * 109.47060 * 19.37895 * 14 5 4 36 36 H 1.08007 * 119.96234 * 359.97438 * 16 15 14 37 37 H 1.08000 * 120.03278 * 180.25560 * 21 19 17 38 38 H 0.97005 * 120.00004 * 179.97438 * 23 22 15 39 39 H 0.96997 * 119.99999 * 359.97438 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8126 0.1762 6 6 4.1001 3.6669 -0.8932 7 1 3.5535 3.4312 -1.7943 8 6 4.8453 4.8357 -0.8190 9 7 5.9463 4.8697 -0.0987 10 14 4.2853 6.3604 -1.7416 11 1 3.0264 6.0631 -2.4711 12 1 4.0486 7.4639 -0.7765 13 1 5.3352 6.7665 -2.7101 14 6 4.5016 3.2688 1.4959 15 6 3.4105 4.0866 2.1374 16 6 3.4280 5.4643 2.0339 17 6 2.4235 6.2164 2.6173 18 9 2.4395 7.5629 2.5094 19 6 1.4030 5.5896 3.3170 20 9 0.4261 6.3257 3.8905 21 6 1.3823 4.2109 3.4226 22 6 2.3872 3.4556 2.8324 23 7 2.3689 2.0616 2.9381 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9337 1.0458 -0.9472 32 1 3.9330 0.8199 0.8183 33 1 6.4667 5.6866 -0.0466 34 1 5.3975 3.8799 1.3870 35 1 4.7249 2.4053 2.1227 36 1 4.2242 5.9546 1.4934 37 1 0.5857 3.7221 3.9638 38 1 1.6539 1.6214 3.4241 39 1 3.0710 1.5346 2.5256 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233381492.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:47 Heat of formation + Delta-G solvation = -51.096236 kcal Electronic energy + Delta-G solvation = -23585.108913 eV Core-core repulsion = 19970.993915 eV Total energy + Delta-G solvation = -3614.114997 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.82533 -47.85756 -39.06801 -36.26887 -34.36688 -33.66314 -31.36106 -30.68210 -28.44257 -27.46994 -25.64342 -23.92630 -22.43410 -21.58700 -20.53483 -20.15878 -17.54782 -17.41429 -16.95141 -16.24937 -15.65556 -15.21188 -14.97014 -14.89747 -14.59517 -14.32778 -13.84062 -13.79096 -13.55623 -13.51005 -13.16580 -12.49752 -12.32818 -12.23745 -12.05384 -11.77899 -11.24264 -11.07081 -10.98676 -10.79814 -10.57983 -10.45513 -10.38877 -10.09191 -9.92443 -9.85004 -9.58306 -8.66952 -8.20771 -7.01435 -6.90848 -5.84650 -3.24991 1.65343 1.83578 3.36515 3.48072 3.51374 4.03346 4.14551 4.46444 4.60382 4.98394 5.10325 5.26847 5.27975 5.29418 5.48156 5.59485 5.66239 5.74413 5.83912 6.04750 6.10200 6.16932 6.22619 6.25096 6.31383 6.37833 6.45382 6.49097 6.65285 6.73874 6.85696 7.05316 7.15549 7.33058 7.66916 7.73578 7.80737 8.07858 8.31460 9.06084 9.74636 10.17316 11.10018 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.010994 B = 0.009417 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.228795 B = 2972.651037 C = 4623.118298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.152 4.152 4 C 0.148 3.852 5 N -0.579 5.579 6 C -0.241 4.241 7 H 0.072 0.928 8 C 0.002 3.998 9 N -0.882 5.882 10 Si 0.875 3.125 11 H -0.277 1.277 12 H -0.282 1.282 13 H -0.292 1.292 14 C 0.157 3.843 15 C -0.114 4.114 16 C -0.061 4.061 17 C -0.001 4.001 18 F -0.145 7.145 19 C 0.090 3.910 20 F -0.142 7.142 21 C -0.222 4.222 22 C 0.235 3.765 23 N -0.867 5.867 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.035 0.965 33 H 0.256 0.744 34 H 0.135 0.865 35 H 0.030 0.970 36 H 0.147 0.853 37 H 0.130 0.870 38 H 0.391 0.609 39 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.642 -6.968 6.194 11.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.192 4.192 4 C 0.021 3.979 5 N -0.297 5.297 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.196 4.196 9 N -0.527 5.527 10 Si 0.704 3.296 11 H -0.202 1.202 12 H -0.208 1.208 13 H -0.219 1.219 14 C 0.031 3.969 15 C -0.121 4.121 16 C -0.081 4.081 17 C -0.023 4.023 18 F -0.124 7.124 19 C 0.069 3.931 20 F -0.121 7.121 21 C -0.246 4.246 22 C 0.129 3.871 23 N -0.409 5.409 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.151 0.849 35 H 0.049 0.951 36 H 0.165 0.835 37 H 0.148 0.852 38 H 0.219 0.781 39 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -6.509 -6.771 6.172 11.239 hybrid contribution -0.839 0.965 -0.401 1.339 sum -7.347 -5.806 5.772 11.000 Atomic orbital electron populations 1.21752 0.96722 1.00512 1.01627 1.21488 0.95104 0.98330 1.00943 1.22460 0.98980 0.94630 1.03092 1.20898 0.91852 0.86384 0.98753 1.44042 1.73371 1.07901 1.04366 1.19127 1.23329 0.99838 0.94646 0.91058 1.24502 0.95529 0.99463 1.00109 1.69811 1.12018 1.26954 1.43928 0.86649 0.78796 0.84548 0.79595 1.20238 1.20844 1.21906 1.20487 0.97229 0.95909 0.83317 1.20537 0.99366 0.93599 0.98647 1.20982 0.96951 0.93739 0.96470 1.17567 0.99507 0.77493 1.07748 1.91428 1.96633 1.29136 1.95217 1.17188 0.87552 0.89189 0.99209 1.91435 1.60662 1.77147 1.82837 1.20111 1.02835 0.91066 1.10608 1.17379 0.92520 0.84306 0.92863 1.42651 1.32101 1.03260 1.62848 0.93094 0.93060 0.93619 0.92746 0.92912 0.90706 0.92691 0.93880 0.94643 0.93378 0.84917 0.95148 0.83547 0.85223 0.78112 0.76502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 37.16 0.37 -1.36 16 2 C -0.12 -1.53 5.93 -26.73 -0.16 -1.69 16 3 C -0.15 -2.44 5.14 -26.73 -0.14 -2.57 16 4 C 0.15 2.65 5.05 -4.04 -0.02 2.63 16 5 N -0.58 -12.66 2.58 -174.61 -0.45 -13.11 16 6 C -0.24 -6.06 9.42 -15.06 -0.14 -6.20 16 7 H 0.07 1.84 8.00 -52.49 -0.42 1.42 16 8 C 0.00 0.05 3.61 -17.43 -0.06 -0.01 16 9 N -0.88 -23.01 10.29 55.49 0.57 -22.44 16 10 Si 0.87 21.14 29.50 -169.99 -5.01 16.12 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 C 0.16 3.27 4.92 -5.19 -0.03 3.25 16 15 C -0.11 -2.26 5.36 -104.42 -0.56 -2.82 16 16 C -0.06 -1.30 9.15 -39.55 -0.36 -1.66 16 17 C 0.00 -0.03 7.30 -39.36 -0.29 -0.32 16 18 F -0.15 -3.11 17.18 2.25 0.04 -3.07 16 19 C 0.09 1.68 7.30 -39.39 -0.29 1.39 16 20 F -0.14 -2.60 17.18 2.25 0.04 -2.57 16 21 C -0.22 -3.63 9.87 -39.32 -0.39 -4.02 16 22 C 0.24 3.93 6.00 -83.75 -0.50 3.43 16 23 N -0.87 -11.30 7.03 32.42 0.23 -11.07 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.23 5.10 -51.93 -0.26 0.97 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.04 0.81 8.11 -51.93 -0.42 0.39 16 32 H 0.04 0.56 6.76 -51.93 -0.35 0.21 16 33 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 34 H 0.13 3.22 4.79 -51.93 -0.25 2.97 16 35 H 0.03 0.56 6.41 -51.93 -0.33 0.23 16 36 H 0.15 3.43 6.50 -52.48 -0.34 3.09 16 37 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.39 3.98 8.84 -40.82 -0.36 3.62 16 39 H 0.40 5.35 4.84 -40.82 -0.20 5.16 16 LS Contribution 318.62 15.07 4.80 4.80 Total: -1.00 -26.54 318.62 -7.39 -33.93 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.03 Total: 7.36 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -2.57 Total: -9.96 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.35 Total: -46.62 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 0.08 Total: -5.64 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.01 Total: 16.12 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.54 -7.39 -33.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233381492.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.167 kcal (2) G-P(sol) polarization free energy of solvation -26.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds