Wall clock time and date at job start Tue Mar 31 2020 05:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46832 * 2 1 4 4 C 1.52999 * 109.46966 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47396 * 187.30232 * 4 3 2 6 6 C 1.36938 * 120.00163 * 279.61972 * 5 4 3 7 7 H 1.07998 * 119.99796 * 15.48046 * 6 5 4 8 8 C 1.38809 * 119.99847 * 195.49297 * 6 5 4 9 9 N 1.31619 * 120.00610 * 32.04060 * 8 6 5 10 10 Si 1.86806 * 119.99646 * 212.04294 * 8 6 5 11 11 H 1.48502 * 109.47113 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47036 * 119.99736 * 10 8 6 13 13 H 1.48499 * 109.47062 * 239.99580 * 10 8 6 14 14 C 1.46501 * 120.00080 * 99.61238 * 5 4 3 15 15 C 1.50697 * 109.47202 * 259.37702 * 14 5 4 16 16 C 1.38175 * 120.00501 * 264.36879 * 15 14 5 17 17 C 1.38378 * 120.07606 * 179.70551 * 16 15 14 18 18 F 1.35095 * 119.96234 * 180.30262 * 17 16 15 19 19 C 1.38705 * 120.07624 * 0.55142 * 17 16 15 20 20 F 1.35093 * 119.99718 * 179.72878 * 19 17 16 21 21 C 1.38289 * 120.00205 * 359.44989 * 19 17 16 22 22 C 1.38857 * 120.00152 * 84.35089 * 15 14 5 23 23 N 1.39811 * 120.04017 * 0.03968 * 22 15 14 24 24 H 1.08993 * 109.47597 * 300.00327 * 1 2 3 25 25 H 1.09006 * 109.47075 * 60.00160 * 1 2 3 26 26 H 1.09000 * 109.47114 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47146 * 239.99945 * 2 1 3 28 28 H 1.08997 * 109.46813 * 119.99915 * 2 1 3 29 29 H 1.09004 * 109.47208 * 59.99952 * 3 2 1 30 30 H 1.08997 * 109.47352 * 299.99585 * 3 2 1 31 31 H 1.08999 * 109.47319 * 67.29847 * 4 3 2 32 32 H 1.09007 * 109.47400 * 307.30544 * 4 3 2 33 33 H 0.96995 * 120.00034 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.47356 * 139.37369 * 14 5 4 35 35 H 1.09005 * 109.47060 * 19.37895 * 14 5 4 36 36 H 1.08007 * 119.96234 * 359.97438 * 16 15 14 37 37 H 1.08000 * 120.03278 * 180.25560 * 21 19 17 38 38 H 0.97005 * 120.00004 * 179.97438 * 23 22 15 39 39 H 0.96997 * 119.99999 * 359.97438 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8126 0.1762 6 6 4.1001 3.6669 -0.8932 7 1 3.5535 3.4312 -1.7943 8 6 4.8453 4.8357 -0.8190 9 7 5.9463 4.8697 -0.0987 10 14 4.2853 6.3604 -1.7416 11 1 3.0264 6.0631 -2.4711 12 1 4.0486 7.4639 -0.7765 13 1 5.3352 6.7665 -2.7101 14 6 4.5016 3.2688 1.4959 15 6 3.4105 4.0866 2.1374 16 6 3.4280 5.4643 2.0339 17 6 2.4235 6.2164 2.6173 18 9 2.4395 7.5629 2.5094 19 6 1.4030 5.5896 3.3170 20 9 0.4261 6.3257 3.8905 21 6 1.3823 4.2109 3.4226 22 6 2.3872 3.4556 2.8324 23 7 2.3689 2.0616 2.9381 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9337 1.0458 -0.9472 32 1 3.9330 0.8199 0.8183 33 1 6.4667 5.6866 -0.0466 34 1 5.3975 3.8799 1.3870 35 1 4.7249 2.4053 2.1227 36 1 4.2242 5.9546 1.4934 37 1 0.5857 3.7221 3.9638 38 1 1.6539 1.6214 3.4241 39 1 3.0710 1.5346 2.5256 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233381492.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:47 Heat of formation + Delta-G solvation = -64.524889 kcal Electronic energy + Delta-G solvation = -23585.691223 eV Core-core repulsion = 19970.993915 eV Total energy + Delta-G solvation = -3614.697307 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.33982 -49.41337 -40.53000 -37.78576 -35.76357 -34.94788 -33.13675 -32.13873 -29.81400 -28.89583 -27.35338 -25.40685 -23.87453 -22.97842 -21.87695 -21.65262 -19.05028 -18.84978 -18.61233 -17.80025 -17.17891 -16.78696 -16.52372 -16.29437 -15.88938 -15.87580 -15.51089 -15.30194 -15.15887 -14.83261 -14.53273 -13.96973 -13.73128 -13.62552 -13.49007 -13.09204 -12.94561 -12.78666 -12.48242 -12.37128 -12.10520 -11.88754 -11.77275 -11.73573 -11.57034 -11.33394 -10.92972 -10.51800 -9.70700 -8.76366 -8.34327 -7.77157 -5.18629 0.17713 0.35043 1.37617 1.48692 1.50957 2.48649 2.62203 2.82367 3.18684 3.22493 3.54118 3.78064 3.84069 4.12894 4.23894 4.31105 4.37338 4.48163 4.59505 4.65149 4.76767 4.93521 4.98253 5.04248 5.08423 5.10338 5.16986 5.22044 5.24593 5.46203 5.54281 5.58941 5.74492 5.78097 5.83052 5.96568 6.46174 6.53504 7.05824 7.17663 7.93921 8.30089 9.11904 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.010994 B = 0.009417 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.228795 B = 2972.651037 C = 4623.118298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.139 4.139 4 C 0.144 3.856 5 N -0.589 5.589 6 C -0.239 4.239 7 H 0.059 0.941 8 C -0.025 4.025 9 N -0.895 5.895 10 Si 0.904 3.096 11 H -0.279 1.279 12 H -0.296 1.296 13 H -0.294 1.294 14 C 0.160 3.840 15 C -0.129 4.129 16 C -0.076 4.076 17 C -0.034 4.034 18 F -0.158 7.158 19 C 0.094 3.906 20 F -0.139 7.139 21 C -0.207 4.207 22 C 0.252 3.748 23 N -0.845 5.845 24 H 0.055 0.945 25 H 0.038 0.962 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.023 0.977 31 H 0.030 0.970 32 H 0.065 0.935 33 H 0.250 0.750 34 H 0.101 0.899 35 H 0.057 0.943 36 H 0.116 0.884 37 H 0.171 0.829 38 H 0.412 0.588 39 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.508 -9.787 7.831 15.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.179 4.179 4 C 0.019 3.981 5 N -0.307 5.307 6 C -0.369 4.369 7 H 0.077 0.923 8 C -0.222 4.222 9 N -0.542 5.542 10 Si 0.735 3.265 11 H -0.205 1.205 12 H -0.224 1.224 13 H -0.222 1.222 14 C 0.034 3.966 15 C -0.137 4.137 16 C -0.097 4.097 17 C -0.055 4.055 18 F -0.138 7.138 19 C 0.073 3.927 20 F -0.118 7.118 21 C -0.230 4.230 22 C 0.144 3.856 23 N -0.386 5.386 24 H 0.074 0.926 25 H 0.057 0.943 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.042 0.958 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.134 0.866 37 H 0.189 0.811 38 H 0.243 0.757 39 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -8.405 -9.648 7.822 14.997 hybrid contribution -0.290 1.744 -0.870 1.971 sum -8.694 -7.903 6.952 13.652 Atomic orbital electron populations 1.21736 0.95728 1.01717 1.01305 1.21437 0.95906 0.95756 1.02113 1.22281 0.97215 0.96853 1.01525 1.21079 0.93089 0.84658 0.99301 1.44186 1.73535 1.09074 1.03938 1.19171 1.22107 1.00456 0.95174 0.92294 1.24713 0.96050 1.00391 1.01016 1.69906 1.12618 1.26706 1.44966 0.86182 0.78281 0.83453 0.78583 1.20455 1.22367 1.22191 1.20278 0.96450 0.96462 0.83414 1.20389 1.00276 0.92863 1.00128 1.20799 0.96844 0.94758 0.97299 1.17740 1.00850 0.77100 1.09849 1.91379 1.96804 1.30061 1.95508 1.17306 0.86814 0.90098 0.98470 1.91443 1.60327 1.77364 1.82650 1.20425 1.03227 0.89861 1.09524 1.17280 0.91216 0.85858 0.91260 1.42566 1.32561 1.01569 1.61947 0.92587 0.94289 0.91665 0.92788 0.90559 0.90722 0.95801 0.95176 0.91636 0.93956 0.88177 0.92512 0.86584 0.81143 0.75669 0.76208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.91 71.98 0.71 -2.17 16 2 C -0.11 -2.47 5.93 30.60 0.18 -2.29 16 3 C -0.14 -4.12 5.14 30.59 0.16 -3.96 16 4 C 0.14 4.87 5.05 86.38 0.44 5.31 16 5 N -0.59 -25.34 2.58 -706.35 -1.82 -27.16 16 6 C -0.24 -12.20 9.42 84.03 0.79 -11.41 16 7 H 0.06 3.10 8.00 -2.91 -0.02 3.08 16 8 C -0.03 -1.32 3.61 84.86 0.31 -1.01 16 9 N -0.90 -48.26 10.29 21.65 0.22 -48.04 16 10 Si 0.90 44.83 29.50 68.60 2.02 46.86 16 11 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 12 H -0.30 -15.24 7.11 99.48 0.71 -14.54 16 13 H -0.29 -14.55 7.11 99.48 0.71 -13.85 16 14 C 0.16 6.55 4.92 85.63 0.42 6.97 16 15 C -0.13 -5.00 5.36 -19.73 -0.11 -5.11 16 16 C -0.08 -3.33 9.15 22.29 0.20 -3.13 16 17 C -0.03 -1.40 7.30 22.41 0.16 -1.24 16 18 F -0.16 -7.01 17.18 44.97 0.77 -6.24 16 19 C 0.09 3.35 7.30 22.39 0.16 3.51 16 20 F -0.14 -4.82 17.18 44.97 0.77 -4.04 16 21 C -0.21 -5.95 9.87 22.44 0.22 -5.73 16 22 C 0.25 7.60 6.00 38.17 0.23 7.83 16 23 N -0.84 -17.88 7.03 -51.33 -0.36 -18.24 16 24 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 2.20 5.10 -2.38 -0.01 2.19 16 30 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.03 1.10 8.11 -2.39 -0.02 1.08 16 32 H 0.07 1.82 6.76 -2.38 -0.02 1.81 16 33 H 0.25 13.35 8.31 -92.71 -0.77 12.58 16 34 H 0.10 4.94 4.79 -2.39 -0.01 4.93 16 35 H 0.06 1.97 6.41 -2.38 -0.02 1.95 16 36 H 0.12 5.76 6.50 -2.91 -0.02 5.74 16 37 H 0.17 3.55 8.06 -2.91 -0.02 3.53 16 38 H 0.41 5.83 8.84 -92.70 -0.82 5.01 16 39 H 0.41 8.79 4.84 -92.71 -0.45 8.34 16 Total: -1.00 -59.67 318.62 5.32 -54.35 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -0.17 Total: 14.95 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: 3.88 Total: -12.43 kcal Atomic # 7 Polarization: -91.49 SS G_CDS: -1.96 Total: -93.45 kcal Atomic # 9 Polarization: -11.83 SS G_CDS: 1.54 Total: -10.28 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.02 Total: 46.86 kcal Total: -59.67 5.32 -54.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233381492.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.177 kcal (2) G-P(sol) polarization free energy of solvation -59.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds