Wall clock time and date at job start Tue Mar 31 2020 06:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 109.47077 * 2 1 4 4 C 1.46901 * 109.47243 * 239.99680 * 2 1 3 5 5 C 1.46902 * 109.46849 * 120.00023 * 2 1 3 6 6 C 1.52990 * 109.47230 * 62.48766 * 5 2 1 7 7 H 1.09006 * 109.47181 * 53.23856 * 6 5 2 8 8 C 1.50709 * 109.47308 * 173.23328 * 6 5 2 9 9 H 1.07992 * 120.00039 * 244.32822 * 8 6 5 10 10 C 1.37879 * 119.99420 * 64.32573 * 8 6 5 11 11 N 1.31514 * 120.00346 * 7.24056 * 10 8 6 12 12 Si 1.86801 * 119.99463 * 187.24325 * 10 8 6 13 13 H 1.48500 * 109.47096 * 269.99738 * 12 10 8 14 14 H 1.48497 * 109.47440 * 30.00053 * 12 10 8 15 15 H 1.48505 * 109.46722 * 149.99872 * 12 10 8 16 16 O 1.42895 * 109.47645 * 293.23689 * 6 5 2 17 17 C 1.35891 * 117.00526 * 156.64026 * 16 6 5 18 18 C 1.38666 * 120.01417 * 1.14805 * 17 16 6 19 19 C 1.38635 * 119.94287 * 179.97438 * 18 17 16 20 20 O 1.35894 * 120.01733 * 179.97438 * 19 18 17 21 21 C 1.38752 * 119.97116 * 0.02562 * 19 18 17 22 22 C 1.38385 * 120.02458 * 0.02562 * 21 19 18 23 23 F 1.35108 * 119.96721 * 180.02562 * 22 21 19 24 24 C 1.38417 * 120.06408 * 359.73989 * 22 21 19 25 25 H 1.09003 * 109.47351 * 288.10780 * 1 2 3 26 26 H 1.09005 * 109.47214 * 48.11013 * 1 2 3 27 27 H 1.09003 * 109.47056 * 168.10691 * 1 2 3 28 28 H 1.08994 * 109.47085 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46898 * 299.99846 * 3 2 1 30 30 H 1.08998 * 109.47181 * 59.99896 * 3 2 1 31 31 H 1.09001 * 109.47114 * 300.00487 * 4 2 1 32 32 H 1.09002 * 109.46823 * 60.00476 * 4 2 1 33 33 H 1.08994 * 109.47026 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.46804 * 302.48771 * 5 2 1 35 35 H 1.08997 * 109.46773 * 182.49118 * 5 2 1 36 36 H 0.96999 * 119.99925 * 355.21166 * 11 10 8 37 37 H 1.08004 * 120.03181 * 0.02562 * 18 17 16 38 38 H 0.96699 * 114.00163 * 90.00073 * 20 19 18 39 39 H 1.07997 * 119.99059 * 180.02562 * 21 19 18 40 40 H 1.07999 * 119.98936 * 180.28053 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9587 -0.6926 -1.1994 5 6 1.9586 -0.6925 1.1995 6 6 1.5004 -2.1519 1.1686 7 1 1.7975 -2.6060 0.2232 8 6 2.1381 -2.9030 2.3089 9 1 2.8316 -3.7056 2.1061 10 6 1.8361 -2.5653 3.6112 11 7 0.8885 -1.6880 3.8602 12 14 2.7732 -3.3538 5.0217 13 1 2.0779 -4.5960 5.4447 14 1 4.1509 -3.6845 4.5772 15 1 2.8355 -2.4077 6.1647 16 8 0.0784 -2.2076 1.2976 17 6 -0.5419 -3.3169 0.8166 18 6 0.2055 -4.3406 0.2543 19 6 -0.4288 -5.4719 -0.2355 20 8 0.3021 -6.4758 -0.7873 21 6 -1.8103 -5.5782 -0.1629 22 6 -2.5550 -4.5552 0.3976 23 9 -3.9002 -4.6602 0.4681 24 6 -1.9226 -3.4273 0.8914 25 1 -0.3634 0.3194 0.9768 26 1 -0.3634 0.6862 -0.7651 27 1 -0.3633 -1.0056 -0.2118 28 1 3.0486 1.3850 0.0005 29 1 1.5953 1.8988 -0.8900 30 1 1.5953 1.8988 0.8899 31 1 1.5953 -1.7202 -1.1994 32 1 1.5954 -0.1787 -2.0894 33 1 3.0487 -0.6929 -1.1991 34 1 1.5593 -0.2050 2.0888 35 1 3.0477 -0.6540 1.2221 36 1 0.4497 -1.2271 3.1282 37 1 1.2808 -4.2572 0.1986 38 1 0.5854 -7.1499 -0.1545 39 1 -2.3047 -6.4595 -0.5440 40 1 -2.5046 -2.6317 1.3326 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233817249.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:30 Heat of formation + Delta-G solvation = 9.282066 kcal Electronic energy + Delta-G solvation = -24057.038506 eV Core-core repulsion = 20484.939090 eV Total energy + Delta-G solvation = -3572.099415 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.145 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.75553 -43.67426 -40.97436 -39.22737 -36.94462 -34.91422 -31.91631 -30.88024 -30.59480 -30.44831 -30.20722 -27.78284 -25.28130 -24.10740 -23.58243 -22.29645 -20.09146 -19.71801 -18.86323 -18.55003 -18.37807 -17.92385 -17.58408 -17.01200 -16.86736 -16.52960 -15.90815 -15.50983 -15.22771 -15.16782 -14.97659 -14.82295 -14.42793 -14.40660 -14.31599 -14.23091 -13.97127 -13.88411 -13.57028 -13.15167 -12.99463 -12.60209 -12.08853 -11.90831 -11.74590 -11.71413 -11.36288 -10.51980 -10.10815 -9.57220 -9.06481 -8.10073 -6.11516 0.03644 0.19282 0.39503 1.92835 2.04216 2.08227 2.20000 2.30503 2.32297 2.42067 2.58053 2.95838 2.99319 3.05562 3.15487 3.20411 3.29365 3.41074 3.43637 3.53790 3.56486 3.60995 3.65627 3.79742 3.85746 3.94204 4.06082 4.13801 4.21102 4.30618 4.52186 4.59661 4.83726 5.20253 5.36603 5.42128 5.76507 5.79086 6.41737 6.63060 6.72483 7.02819 7.69271 9.22817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.274 5.274 3 C -0.043 4.043 4 C -0.047 4.047 5 C -0.003 4.003 6 C 0.171 3.829 7 H 0.059 0.941 8 C -0.637 4.637 9 H 0.075 0.925 10 C 0.051 3.949 11 N -0.857 5.857 12 Si 1.061 2.939 13 H -0.278 1.278 14 H -0.280 1.280 15 H -0.275 1.275 16 O -0.322 6.322 17 C 0.200 3.800 18 C -0.234 4.234 19 C 0.172 3.828 20 O -0.497 6.497 21 C -0.229 4.229 22 C 0.153 3.847 23 F -0.133 7.133 24 C -0.211 4.211 25 H 0.120 0.880 26 H 0.106 0.894 27 H 0.128 0.872 28 H 0.116 0.884 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.278 0.722 37 H 0.145 0.855 38 H 0.399 0.601 39 H 0.139 0.861 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.541 10.051 -12.332 16.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 N 0.068 4.932 3 C -0.185 4.185 4 C -0.188 4.188 5 C -0.122 4.122 6 C 0.117 3.883 7 H 0.077 0.923 8 C -0.673 4.673 9 H 0.094 0.906 10 C -0.162 4.162 11 N -0.490 5.490 12 Si 0.886 3.114 13 H -0.203 1.203 14 H -0.205 1.205 15 H -0.200 1.200 16 O -0.236 6.236 17 C 0.153 3.847 18 C -0.254 4.254 19 C 0.127 3.873 20 O -0.309 6.309 21 C -0.248 4.248 22 C 0.134 3.866 23 F -0.111 7.111 24 C -0.231 4.231 25 H 0.139 0.861 26 H 0.124 0.876 27 H 0.146 0.854 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.092 0.908 37 H 0.162 0.838 38 H 0.257 0.743 39 H 0.157 0.843 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.410 10.491 -11.116 15.660 hybrid contribution -0.135 -0.458 -1.080 1.181 sum 3.275 10.033 -12.196 16.128 Atomic orbital electron populations 1.24316 0.76249 1.09407 1.08387 1.46419 1.15692 1.14727 1.16372 1.24067 1.05153 0.80790 1.08445 1.24104 1.05192 1.02467 0.87067 1.24980 1.04201 0.96707 0.86322 1.20653 0.77767 0.89596 1.00241 0.92321 1.22103 1.32004 1.21959 0.91243 0.90641 1.26048 0.94473 0.95312 1.00393 1.70961 1.18021 1.23037 1.37002 0.83564 0.75649 0.77047 0.75154 1.20326 1.20532 1.20015 1.86156 1.24788 1.36877 1.75815 1.18075 0.90254 0.86744 0.89635 1.21572 1.01661 0.95812 1.06316 1.17806 0.88520 0.88742 0.92200 1.84748 1.71885 1.36234 1.37993 1.21207 0.94150 1.01250 1.08223 1.16968 0.76979 0.94318 0.98356 1.91534 1.29240 1.96197 1.94170 1.20285 0.92987 1.00273 1.09521 0.86129 0.87578 0.85410 0.86571 0.86835 0.86430 0.86325 0.86742 0.86361 0.84819 0.84785 0.90848 0.83765 0.74321 0.84317 0.84148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.42 7.03 60.07 0.42 0.84 16 2 N -0.27 2.99 0.05 -395.63 -0.02 2.97 16 3 C -0.04 0.58 7.99 60.06 0.48 1.06 16 4 C -0.05 0.56 7.58 60.07 0.46 1.02 16 5 C 0.00 0.02 3.47 -3.83 -0.01 0.00 16 6 C 0.17 -0.05 1.37 -27.88 -0.04 -0.09 16 7 H 0.06 -0.14 3.93 -51.93 -0.20 -0.34 16 8 C -0.64 -3.76 8.07 -34.44 -0.28 -4.04 16 9 H 0.08 0.54 7.82 -52.49 -0.41 0.13 16 10 C 0.05 0.44 5.22 -17.82 -0.09 0.35 16 11 N -0.86 -8.32 13.01 55.43 0.72 -7.59 16 12 Si 1.06 8.65 29.91 -169.99 -5.08 3.57 16 13 H -0.28 -2.58 7.11 56.52 0.40 -2.18 16 14 H -0.28 -2.08 7.11 56.52 0.40 -1.68 16 15 H -0.28 -2.53 7.11 56.52 0.40 -2.12 16 16 O -0.32 -0.33 4.82 -19.40 -0.09 -0.42 16 17 C 0.20 0.46 6.06 -39.25 -0.24 0.22 16 18 C -0.23 -0.53 8.67 -39.28 -0.34 -0.87 16 19 C 0.17 0.43 6.70 -39.25 -0.26 0.17 16 20 O -0.50 -0.71 13.50 -19.41 -0.26 -0.97 16 21 C -0.23 -0.66 9.96 -39.34 -0.39 -1.05 16 22 C 0.15 0.53 7.29 -39.46 -0.29 0.24 16 23 F -0.13 -0.57 17.27 2.25 0.04 -0.53 16 24 C -0.21 -0.59 9.96 -39.34 -0.39 -0.98 16 25 H 0.12 -1.01 7.91 -51.93 -0.41 -1.42 16 26 H 0.11 -1.34 7.95 -51.93 -0.41 -1.76 16 27 H 0.13 -0.95 5.36 -51.93 -0.28 -1.23 16 28 H 0.12 -1.64 8.13 -51.93 -0.42 -2.07 16 29 H 0.11 -1.73 8.05 -51.93 -0.42 -2.15 16 30 H 0.12 -1.52 8.14 -51.93 -0.42 -1.94 16 31 H 0.12 -1.18 5.87 -51.93 -0.30 -1.48 16 32 H 0.11 -1.62 8.14 -51.93 -0.42 -2.05 16 33 H 0.12 -1.54 8.14 -51.93 -0.42 -1.96 16 34 H 0.13 -0.38 6.04 -51.93 -0.31 -0.69 16 35 H 0.13 -0.86 8.12 -51.93 -0.42 -1.28 16 36 H 0.28 1.96 4.67 -40.82 -0.19 1.77 16 37 H 0.14 0.27 5.69 -52.48 -0.30 -0.03 16 38 H 0.40 -1.01 9.06 45.56 0.41 -0.60 16 39 H 0.14 0.26 8.06 -52.49 -0.42 -0.16 16 40 H 0.14 0.27 8.06 -52.49 -0.42 -0.16 16 LS Contribution 318.43 15.07 4.80 4.80 Total: 0.00 -19.25 318.43 -5.46 -24.71 By element: Atomic # 1 Polarization: -18.82 SS G_CDS: -4.58 Total: -23.40 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -0.98 Total: -3.13 kcal Atomic # 7 Polarization: -5.32 SS G_CDS: 0.70 Total: -4.62 kcal Atomic # 8 Polarization: -1.04 SS G_CDS: -0.36 Total: -1.39 kcal Atomic # 9 Polarization: -0.57 SS G_CDS: 0.04 Total: -0.53 kcal Atomic # 14 Polarization: 8.65 SS G_CDS: -5.08 Total: 3.57 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -19.25 -5.46 -24.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233817249.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.995 kcal (2) G-P(sol) polarization free energy of solvation -19.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds