Wall clock time and date at job start Tue Mar 31 2020 06:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 109.47077 * 2 1 4 4 C 1.46901 * 109.47243 * 239.99680 * 2 1 3 5 5 C 1.46902 * 109.46849 * 120.00023 * 2 1 3 6 6 C 1.52990 * 109.47230 * 62.48766 * 5 2 1 7 7 H 1.09006 * 109.47181 * 53.23856 * 6 5 2 8 8 C 1.50709 * 109.47308 * 173.23328 * 6 5 2 9 9 H 1.07992 * 120.00039 * 244.32822 * 8 6 5 10 10 C 1.37879 * 119.99420 * 64.32573 * 8 6 5 11 11 N 1.31514 * 120.00346 * 7.24056 * 10 8 6 12 12 Si 1.86801 * 119.99463 * 187.24325 * 10 8 6 13 13 H 1.48500 * 109.47096 * 269.99738 * 12 10 8 14 14 H 1.48497 * 109.47440 * 30.00053 * 12 10 8 15 15 H 1.48505 * 109.46722 * 149.99872 * 12 10 8 16 16 O 1.42895 * 109.47645 * 293.23689 * 6 5 2 17 17 C 1.35891 * 117.00526 * 156.64026 * 16 6 5 18 18 C 1.38666 * 120.01417 * 1.14805 * 17 16 6 19 19 C 1.38635 * 119.94287 * 179.97438 * 18 17 16 20 20 O 1.35894 * 120.01733 * 179.97438 * 19 18 17 21 21 C 1.38752 * 119.97116 * 0.02562 * 19 18 17 22 22 C 1.38385 * 120.02458 * 0.02562 * 21 19 18 23 23 F 1.35108 * 119.96721 * 180.02562 * 22 21 19 24 24 C 1.38417 * 120.06408 * 359.73989 * 22 21 19 25 25 H 1.09003 * 109.47351 * 288.10780 * 1 2 3 26 26 H 1.09005 * 109.47214 * 48.11013 * 1 2 3 27 27 H 1.09003 * 109.47056 * 168.10691 * 1 2 3 28 28 H 1.08994 * 109.47085 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46898 * 299.99846 * 3 2 1 30 30 H 1.08998 * 109.47181 * 59.99896 * 3 2 1 31 31 H 1.09001 * 109.47114 * 300.00487 * 4 2 1 32 32 H 1.09002 * 109.46823 * 60.00476 * 4 2 1 33 33 H 1.08994 * 109.47026 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.46804 * 302.48771 * 5 2 1 35 35 H 1.08997 * 109.46773 * 182.49118 * 5 2 1 36 36 H 0.96999 * 119.99925 * 355.21166 * 11 10 8 37 37 H 1.08004 * 120.03181 * 0.02562 * 18 17 16 38 38 H 0.96699 * 114.00163 * 90.00073 * 20 19 18 39 39 H 1.07997 * 119.99059 * 180.02562 * 21 19 18 40 40 H 1.07999 * 119.98936 * 180.28053 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9587 -0.6926 -1.1994 5 6 1.9586 -0.6925 1.1995 6 6 1.5004 -2.1519 1.1686 7 1 1.7975 -2.6060 0.2232 8 6 2.1381 -2.9030 2.3089 9 1 2.8316 -3.7056 2.1061 10 6 1.8361 -2.5653 3.6112 11 7 0.8885 -1.6880 3.8602 12 14 2.7732 -3.3538 5.0217 13 1 2.0779 -4.5960 5.4447 14 1 4.1509 -3.6845 4.5772 15 1 2.8355 -2.4077 6.1647 16 8 0.0784 -2.2076 1.2976 17 6 -0.5419 -3.3169 0.8166 18 6 0.2055 -4.3406 0.2543 19 6 -0.4288 -5.4719 -0.2355 20 8 0.3021 -6.4758 -0.7873 21 6 -1.8103 -5.5782 -0.1629 22 6 -2.5550 -4.5552 0.3976 23 9 -3.9002 -4.6602 0.4681 24 6 -1.9226 -3.4273 0.8914 25 1 -0.3634 0.3194 0.9768 26 1 -0.3634 0.6862 -0.7651 27 1 -0.3633 -1.0056 -0.2118 28 1 3.0486 1.3850 0.0005 29 1 1.5953 1.8988 -0.8900 30 1 1.5953 1.8988 0.8899 31 1 1.5953 -1.7202 -1.1994 32 1 1.5954 -0.1787 -2.0894 33 1 3.0487 -0.6929 -1.1991 34 1 1.5593 -0.2050 2.0888 35 1 3.0477 -0.6540 1.2221 36 1 0.4497 -1.2271 3.1282 37 1 1.2808 -4.2572 0.1986 38 1 0.5854 -7.1499 -0.1545 39 1 -2.3047 -6.4595 -0.5440 40 1 -2.5046 -2.6317 1.3326 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233817249.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:30 Heat of formation + Delta-G solvation = 1.872922 kcal Electronic energy + Delta-G solvation = -24057.359790 eV Core-core repulsion = 20484.939090 eV Total energy + Delta-G solvation = -3572.420700 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.04756 -43.02059 -41.04047 -39.30719 -37.09297 -35.26356 -31.89512 -30.98176 -30.38886 -29.64645 -29.56386 -27.75419 -25.15663 -23.96906 -23.69930 -22.28070 -20.27606 -19.78249 -18.34232 -18.21218 -17.93477 -17.76887 -17.51764 -17.13983 -16.95138 -16.75063 -16.02535 -15.74037 -15.50509 -15.06880 -14.65532 -14.42151 -14.35051 -13.97054 -13.65030 -13.46638 -13.35284 -13.27017 -13.20108 -13.08358 -13.01619 -12.77539 -12.74843 -12.13582 -12.04828 -11.88107 -11.71570 -10.95676 -10.68142 -9.78354 -9.26838 -8.64604 -6.62584 -0.00951 0.19526 0.84014 1.51281 1.61197 1.70525 2.02741 2.38739 2.44274 2.72063 2.92357 2.96095 3.00533 3.17557 3.46974 3.70793 3.88932 3.95272 3.98610 4.02448 4.12252 4.15921 4.17799 4.22577 4.35779 4.38185 4.47352 4.55295 4.64255 4.67805 4.74108 4.78708 4.83072 5.00210 5.18219 5.22606 5.52691 5.58374 6.01708 6.38833 6.55947 6.69847 7.18878 8.72639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.258 5.258 3 C -0.045 4.045 4 C -0.053 4.053 5 C 0.016 3.984 6 C 0.166 3.834 7 H 0.083 0.917 8 C -0.636 4.636 9 H 0.058 0.942 10 C 0.027 3.973 11 N -0.902 5.902 12 Si 1.075 2.925 13 H -0.299 1.299 14 H -0.268 1.268 15 H -0.293 1.293 16 O -0.316 6.316 17 C 0.197 3.803 18 C -0.237 4.237 19 C 0.174 3.826 20 O -0.503 6.503 21 C -0.237 4.237 22 C 0.142 3.858 23 F -0.141 7.141 24 C -0.218 4.218 25 H 0.103 0.897 26 H 0.144 0.856 27 H 0.104 0.896 28 H 0.129 0.871 29 H 0.143 0.857 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.146 0.854 33 H 0.134 0.866 34 H 0.111 0.889 35 H 0.151 0.849 36 H 0.288 0.712 37 H 0.148 0.852 38 H 0.416 0.584 39 H 0.146 0.854 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.389 11.490 -14.735 19.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 N 0.084 4.916 3 C -0.186 4.186 4 C -0.194 4.194 5 C -0.106 4.106 6 C 0.112 3.888 7 H 0.100 0.900 8 C -0.673 4.673 9 H 0.076 0.924 10 C -0.183 4.183 11 N -0.538 5.538 12 Si 0.903 3.097 13 H -0.226 1.226 14 H -0.193 1.193 15 H -0.219 1.219 16 O -0.230 6.230 17 C 0.150 3.850 18 C -0.256 4.256 19 C 0.128 3.872 20 O -0.317 6.317 21 C -0.256 4.256 22 C 0.122 3.878 23 F -0.120 7.120 24 C -0.237 4.237 25 H 0.121 0.879 26 H 0.162 0.838 27 H 0.122 0.878 28 H 0.147 0.853 29 H 0.162 0.838 30 H 0.130 0.870 31 H 0.115 0.885 32 H 0.164 0.836 33 H 0.152 0.848 34 H 0.129 0.871 35 H 0.168 0.832 36 H 0.102 0.898 37 H 0.166 0.834 38 H 0.276 0.724 39 H 0.164 0.836 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.287 11.919 -13.523 18.528 hybrid contribution -0.367 -0.950 -0.422 1.103 sum 3.920 10.969 -13.945 18.170 Atomic orbital electron populations 1.24302 0.76726 1.08843 1.08742 1.46018 1.15161 1.15896 1.14547 1.24288 1.06055 0.78535 1.09674 1.24307 1.06279 1.01520 0.87255 1.24212 1.04753 0.93776 0.87844 1.20761 0.76355 0.92661 0.98990 0.90000 1.22290 1.30929 1.21727 0.92403 0.92352 1.26069 0.94980 0.95841 1.01375 1.70916 1.19871 1.25065 1.37965 0.83383 0.76099 0.75480 0.74783 1.22596 1.19284 1.21932 1.86193 1.25050 1.36011 1.75710 1.18164 0.90277 0.87097 0.89458 1.21632 1.01805 0.95817 1.06325 1.17837 0.88481 0.89054 0.91781 1.84704 1.71673 1.36511 1.38806 1.21325 0.94439 1.01420 1.08416 1.17114 0.76736 0.94881 0.99051 1.91508 1.29837 1.96285 1.94327 1.20359 0.93364 1.00337 1.09684 0.87861 0.83757 0.87796 0.85273 0.83829 0.87048 0.88549 0.83553 0.84794 0.87092 0.83171 0.89806 0.83395 0.72364 0.83614 0.83789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.92 7.03 127.69 0.90 1.82 16 2 N -0.26 6.10 0.05 ******* -0.07 6.04 16 3 C -0.05 1.35 7.99 127.69 1.02 2.37 16 4 C -0.05 1.40 7.58 127.69 0.97 2.37 16 5 C 0.02 -0.17 3.47 86.30 0.30 0.13 16 6 C 0.17 -0.07 1.37 29.85 0.04 -0.03 16 7 H 0.08 -0.43 3.93 -2.38 -0.01 -0.44 16 8 C -0.64 -8.17 8.07 25.60 0.21 -7.96 16 9 H 0.06 0.91 7.82 -2.91 -0.02 0.88 16 10 C 0.03 0.51 5.22 84.66 0.44 0.95 16 11 N -0.90 -19.30 13.01 21.45 0.28 -19.03 16 12 Si 1.07 19.80 29.91 68.60 2.05 21.85 16 13 H -0.30 -6.38 7.11 99.48 0.71 -5.67 16 14 H -0.27 -4.24 7.11 99.48 0.71 -3.53 16 15 H -0.29 -6.14 7.11 99.48 0.71 -5.44 16 16 O -0.32 -0.91 4.82 -92.32 -0.45 -1.35 16 17 C 0.20 1.08 6.06 22.49 0.14 1.22 16 18 C -0.24 -1.17 8.67 22.47 0.19 -0.98 16 19 C 0.17 0.91 6.70 22.49 0.15 1.06 16 20 O -0.50 -1.30 13.50 -92.35 -1.25 -2.55 16 21 C -0.24 -1.51 9.96 22.43 0.22 -1.29 16 22 C 0.14 1.13 7.29 22.35 0.16 1.29 16 23 F -0.14 -1.38 17.27 44.97 0.78 -0.60 16 24 C -0.22 -1.47 9.96 22.43 0.22 -1.24 16 25 H 0.10 -1.70 7.91 -2.39 -0.02 -1.71 16 26 H 0.14 -4.06 7.95 -2.38 -0.02 -4.08 16 27 H 0.10 -1.56 5.36 -2.39 -0.01 -1.57 16 28 H 0.13 -4.06 8.13 -2.39 -0.02 -4.08 16 29 H 0.14 -4.99 8.05 -2.39 -0.02 -5.00 16 30 H 0.11 -3.05 8.14 -2.39 -0.02 -3.07 16 31 H 0.10 -2.04 5.87 -2.39 -0.01 -2.06 16 32 H 0.15 -4.72 8.14 -2.39 -0.02 -4.74 16 33 H 0.13 -3.90 8.14 -2.39 -0.02 -3.92 16 34 H 0.11 -0.56 6.04 -2.39 -0.01 -0.58 16 35 H 0.15 -2.12 8.12 -2.39 -0.02 -2.14 16 36 H 0.29 4.58 4.67 -92.71 -0.43 4.15 16 37 H 0.15 0.56 5.69 -2.91 -0.02 0.54 16 38 H 0.42 -2.23 9.06 -74.06 -0.67 -2.90 16 39 H 0.15 0.62 8.06 -2.91 -0.02 0.60 16 40 H 0.14 0.75 8.06 -2.91 -0.02 0.73 16 Total: 0.00 -46.99 318.43 7.04 -39.95 By element: Atomic # 1 Polarization: -44.75 SS G_CDS: 0.73 Total: -44.02 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 4.97 Total: -0.29 kcal Atomic # 7 Polarization: -13.20 SS G_CDS: 0.21 Total: -12.99 kcal Atomic # 8 Polarization: -2.21 SS G_CDS: -1.69 Total: -3.90 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.78 Total: -0.60 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: 2.05 Total: 21.85 kcal Total: -46.99 7.04 -39.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233817249.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.826 kcal (2) G-P(sol) polarization free energy of solvation -46.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds