Wall clock time and date at job start Tue Mar 31 2020 06:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 109.47263 * 2 1 4 4 C 1.46902 * 109.47175 * 239.99704 * 2 1 3 5 5 C 1.46902 * 109.47052 * 119.99704 * 2 1 3 6 6 C 1.53005 * 109.47177 * 63.32063 * 5 2 1 7 7 H 1.09003 * 109.47000 * 53.67580 * 6 5 2 8 8 C 1.50697 * 109.47235 * 173.68356 * 6 5 2 9 9 H 1.08004 * 119.99551 * 244.53608 * 8 6 5 10 10 C 1.37875 * 119.99920 * 64.53777 * 8 6 5 11 11 N 1.31507 * 120.00392 * 2.58480 * 10 8 6 12 12 Si 1.86803 * 119.99623 * 182.59090 * 10 8 6 13 13 H 1.48494 * 109.47567 * 59.99627 * 12 10 8 14 14 H 1.48502 * 109.47185 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.46860 * 299.99706 * 12 10 8 16 16 O 1.42903 * 109.46974 * 293.68335 * 6 5 2 17 17 C 1.35951 * 117.00348 * 156.30391 * 16 6 5 18 18 C 1.38750 * 120.03003 * 4.86090 * 17 16 6 19 19 C 1.38183 * 120.06793 * 179.69994 * 18 17 16 20 20 C 1.38227 * 120.13379 * 0.59451 * 19 18 17 21 21 C 1.38702 * 120.06844 * 359.67867 * 20 19 18 22 22 O 1.35961 * 120.03256 * 180.02562 * 21 20 19 23 23 C 1.38754 * 120.03874 * 185.12874 * 17 16 6 24 24 F 1.35105 * 120.06676 * 0.03181 * 23 17 16 25 25 H 1.09001 * 109.46933 * 290.09098 * 1 2 3 26 26 H 1.08996 * 109.46692 * 50.08863 * 1 2 3 27 27 H 1.08997 * 109.47084 * 170.08671 * 1 2 3 28 28 H 1.08996 * 109.47087 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46671 * 299.99758 * 3 2 1 30 30 H 1.08998 * 109.47322 * 59.99489 * 3 2 1 31 31 H 1.08999 * 109.46784 * 300.00015 * 4 2 1 32 32 H 1.09000 * 109.46767 * 60.00057 * 4 2 1 33 33 H 1.08996 * 109.47193 * 180.02562 * 4 2 1 34 34 H 1.09004 * 109.47230 * 303.32100 * 5 2 1 35 35 H 1.08993 * 109.47584 * 183.31709 * 5 2 1 36 36 H 0.96998 * 119.99845 * 4.36309 * 11 10 8 37 37 H 1.07994 * 119.97129 * 359.97438 * 18 17 16 38 38 H 1.07996 * 119.93253 * 180.29730 * 19 18 17 39 39 H 1.07996 * 119.96450 * 179.70310 * 20 19 18 40 40 H 0.96695 * 113.99677 * 269.97808 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9587 -0.6926 -1.1994 5 6 1.9587 -0.6924 1.1995 6 6 1.5180 -2.1571 1.1585 7 1 1.8337 -2.6052 0.2163 8 6 2.1481 -2.9036 2.3060 9 1 2.8563 -3.6953 2.1112 10 6 1.8203 -2.5758 3.6045 11 7 0.9202 -1.6466 3.8410 12 14 2.6550 -3.4514 5.0279 13 1 4.1206 -3.2224 4.9591 14 1 2.1312 -2.9198 6.3118 15 1 2.3772 -4.9079 4.9444 16 8 0.0950 -2.2296 1.2671 17 6 -0.5063 -3.3421 0.7681 18 6 0.2638 -4.3869 0.2777 19 6 -0.3465 -5.5206 -0.2240 20 6 -1.7255 -5.6125 -0.2504 21 6 -2.5008 -4.5690 0.2332 22 8 -3.8571 -4.6604 0.2074 23 6 -1.8908 -3.4316 0.7435 24 9 -2.6434 -2.4133 1.2147 25 1 -0.3633 0.3530 0.9651 26 1 -0.3632 0.6593 -0.7882 27 1 -0.3633 -1.0123 -0.1769 28 1 3.0487 1.3849 0.0005 29 1 1.5954 1.8987 -0.8900 30 1 1.5953 1.8988 0.8899 31 1 1.5953 -1.7202 -1.1993 32 1 1.5953 -0.1787 -2.0894 33 1 3.0487 -0.6930 -1.1992 34 1 1.5475 -0.2141 2.0885 35 1 3.0470 -0.6413 1.2298 36 1 0.4412 -1.2366 3.1039 37 1 1.3413 -4.3159 0.2922 38 1 0.2551 -6.3345 -0.6008 39 1 -2.1996 -6.4978 -0.6475 40 1 -4.2588 -4.3208 -0.6040 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233870519.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:34 Heat of formation + Delta-G solvation = 12.261441 kcal Electronic energy + Delta-G solvation = -24398.481264 eV Core-core repulsion = 20826.511044 eV Total energy + Delta-G solvation = -3571.970220 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.145 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.50522 -43.64622 -40.80860 -39.33545 -37.07431 -34.98054 -31.93454 -30.69070 -30.59498 -30.49754 -30.08504 -27.78216 -25.25572 -24.19484 -23.46772 -22.34372 -20.00308 -19.64612 -18.82998 -18.70723 -18.26382 -18.05692 -17.91881 -17.45903 -16.68907 -15.90570 -15.60107 -15.27341 -15.26196 -15.10024 -14.99897 -14.77778 -14.42378 -14.33217 -14.30826 -14.20157 -13.93268 -13.87122 -13.48122 -13.11133 -12.98610 -12.72486 -12.08542 -12.02803 -11.73030 -11.64638 -11.29314 -10.44720 -10.13618 -9.53989 -8.97465 -8.04749 -6.09123 0.06075 0.16229 0.38276 1.93039 2.06323 2.10210 2.21458 2.32172 2.37473 2.48901 2.59818 2.96427 3.00154 3.09637 3.15666 3.23288 3.31620 3.45011 3.45817 3.52755 3.53857 3.58395 3.64485 3.83077 3.89379 3.98084 4.03724 4.04270 4.15635 4.42008 4.56078 4.61617 5.09718 5.19090 5.32512 5.48981 5.61985 5.81075 6.42611 6.64228 6.68558 7.05761 7.72690 9.26799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.273 5.273 3 C -0.043 4.043 4 C -0.046 4.046 5 C -0.005 4.005 6 C 0.173 3.827 7 H 0.058 0.942 8 C -0.638 4.638 9 H 0.076 0.924 10 C 0.052 3.948 11 N -0.859 5.859 12 Si 1.059 2.941 13 H -0.279 1.279 14 H -0.274 1.274 15 H -0.278 1.278 16 O -0.320 6.320 17 C 0.136 3.864 18 C -0.179 4.179 19 C -0.076 4.076 20 C -0.163 4.163 21 C 0.107 3.893 22 O -0.485 6.485 23 C 0.026 3.974 24 F -0.130 7.130 25 H 0.120 0.880 26 H 0.105 0.895 27 H 0.128 0.872 28 H 0.116 0.884 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.279 0.721 37 H 0.146 0.854 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.543 8.853 -16.249 18.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 N 0.068 4.932 3 C -0.184 4.184 4 C -0.188 4.188 5 C -0.123 4.123 6 C 0.119 3.881 7 H 0.076 0.924 8 C -0.674 4.674 9 H 0.094 0.906 10 C -0.161 4.161 11 N -0.492 5.492 12 Si 0.884 3.116 13 H -0.205 1.205 14 H -0.198 1.198 15 H -0.203 1.203 16 O -0.235 6.235 17 C 0.088 3.912 18 C -0.198 4.198 19 C -0.094 4.094 20 C -0.182 4.182 21 C 0.061 3.939 22 O -0.295 6.295 23 C 0.005 3.995 24 F -0.109 7.109 25 H 0.138 0.862 26 H 0.124 0.876 27 H 0.146 0.854 28 H 0.134 0.866 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.136 0.864 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.092 0.908 37 H 0.164 0.836 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 3.593 8.829 -13.937 16.885 hybrid contribution -0.244 0.209 -1.841 1.868 sum 3.349 9.038 -15.778 18.489 Atomic orbital electron populations 1.24329 0.76185 1.09607 1.08270 1.46417 1.15688 1.14722 1.16364 1.24060 1.05109 0.80824 1.08445 1.24085 1.05160 1.02420 0.87112 1.25001 1.04196 0.96718 0.86431 1.20640 0.77691 0.89615 1.00133 0.92422 1.22109 1.30806 1.23146 0.91310 0.90588 1.26054 0.94822 0.94641 1.00593 1.70989 1.19701 1.21696 1.36841 0.83596 0.75873 0.76501 0.75654 1.20480 1.19816 1.20311 1.86182 1.25138 1.36636 1.75534 1.18611 0.89585 0.88950 0.94014 1.21320 1.01148 0.93738 1.03586 1.20941 0.93920 0.97274 0.97294 1.21223 0.93882 0.99329 1.03755 1.18176 0.83728 0.91981 0.99996 1.84909 1.15198 1.85156 1.44236 1.17438 0.86540 0.87627 1.07896 1.91479 1.75591 1.57200 1.86636 0.86187 0.87628 0.85380 0.86569 0.86870 0.86430 0.86402 0.86810 0.86361 0.84601 0.84789 0.90758 0.83642 0.84808 0.84539 0.75208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.38 7.10 60.07 0.43 0.80 16 2 N -0.27 2.84 0.05 -395.63 -0.02 2.82 16 3 C -0.04 0.56 8.00 60.06 0.48 1.04 16 4 C -0.05 0.55 7.57 60.07 0.45 1.01 16 5 C 0.00 0.02 3.50 -3.82 -0.01 0.01 16 6 C 0.17 0.04 1.36 -27.88 -0.04 0.00 16 7 H 0.06 -0.15 4.11 -51.93 -0.21 -0.36 16 8 C -0.64 -4.10 7.89 -34.44 -0.27 -4.37 16 9 H 0.08 0.55 7.81 -52.48 -0.41 0.14 16 10 C 0.05 0.50 5.24 -17.82 -0.09 0.40 16 11 N -0.86 -9.27 12.89 55.43 0.71 -8.56 16 12 Si 1.06 9.46 29.90 -169.99 -5.08 4.37 16 13 H -0.28 -2.25 7.11 56.52 0.40 -1.85 16 14 H -0.27 -2.89 7.11 56.52 0.40 -2.49 16 15 H -0.28 -2.63 7.11 56.52 0.40 -2.23 16 16 O -0.32 -0.71 4.71 -19.59 -0.09 -0.80 16 17 C 0.14 0.42 6.07 -39.20 -0.24 0.18 16 18 C -0.18 -0.32 8.69 -39.41 -0.34 -0.66 16 19 C -0.08 -0.07 10.04 -39.61 -0.40 -0.46 16 20 C -0.16 -0.25 9.98 -39.41 -0.39 -0.64 16 21 C 0.11 0.34 6.71 -39.20 -0.26 0.07 16 22 O -0.49 -1.25 13.37 -19.62 -0.26 -1.52 16 23 C 0.03 0.11 7.32 -39.18 -0.29 -0.18 16 24 F -0.13 -0.73 16.95 2.25 0.04 -0.69 16 25 H 0.12 -0.83 7.95 -51.93 -0.41 -1.24 16 26 H 0.11 -1.25 7.99 -51.93 -0.42 -1.67 16 27 H 0.13 -0.79 5.22 -51.93 -0.27 -1.06 16 28 H 0.12 -1.60 8.13 -51.93 -0.42 -2.02 16 29 H 0.11 -1.68 8.07 -51.93 -0.42 -2.10 16 30 H 0.12 -1.44 8.14 -51.93 -0.42 -1.86 16 31 H 0.12 -1.21 5.88 -51.93 -0.31 -1.51 16 32 H 0.11 -1.62 8.14 -51.93 -0.42 -2.05 16 33 H 0.12 -1.55 8.14 -51.93 -0.42 -1.97 16 34 H 0.14 -0.23 5.90 -51.93 -0.31 -0.53 16 35 H 0.13 -0.79 8.11 -51.93 -0.42 -1.21 16 36 H 0.28 2.38 4.72 -40.82 -0.19 2.19 16 37 H 0.15 0.15 5.66 -52.49 -0.30 -0.14 16 38 H 0.13 -0.19 8.06 -52.49 -0.42 -0.61 16 39 H 0.14 -0.02 8.06 -52.49 -0.42 -0.44 16 40 H 0.39 -1.10 9.06 45.56 0.41 -0.69 16 LS Contribution 317.78 15.07 4.79 4.79 Total: 0.00 -20.63 317.78 -5.47 -26.11 By element: Atomic # 1 Polarization: -19.13 SS G_CDS: -4.58 Total: -23.71 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -0.98 Total: -2.81 kcal Atomic # 7 Polarization: -6.43 SS G_CDS: 0.70 Total: -5.74 kcal Atomic # 8 Polarization: -1.96 SS G_CDS: -0.35 Total: -2.32 kcal Atomic # 9 Polarization: -0.73 SS G_CDS: 0.04 Total: -0.69 kcal Atomic # 14 Polarization: 9.46 SS G_CDS: -5.08 Total: 4.37 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -20.63 -5.47 -26.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233870519.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.368 kcal (2) G-P(sol) polarization free energy of solvation -20.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds