Wall clock time and date at job start Tue Mar 31 2020 06:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 109.47263 * 2 1 4 4 C 1.46902 * 109.47175 * 239.99704 * 2 1 3 5 5 C 1.46902 * 109.47052 * 119.99704 * 2 1 3 6 6 C 1.53005 * 109.47177 * 63.32063 * 5 2 1 7 7 H 1.09003 * 109.47000 * 53.67580 * 6 5 2 8 8 C 1.50697 * 109.47235 * 173.68356 * 6 5 2 9 9 H 1.08004 * 119.99551 * 244.53608 * 8 6 5 10 10 C 1.37875 * 119.99920 * 64.53777 * 8 6 5 11 11 N 1.31507 * 120.00392 * 2.58480 * 10 8 6 12 12 Si 1.86803 * 119.99623 * 182.59090 * 10 8 6 13 13 H 1.48494 * 109.47567 * 59.99627 * 12 10 8 14 14 H 1.48502 * 109.47185 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.46860 * 299.99706 * 12 10 8 16 16 O 1.42903 * 109.46974 * 293.68335 * 6 5 2 17 17 C 1.35951 * 117.00348 * 156.30391 * 16 6 5 18 18 C 1.38750 * 120.03003 * 4.86090 * 17 16 6 19 19 C 1.38183 * 120.06793 * 179.69994 * 18 17 16 20 20 C 1.38227 * 120.13379 * 0.59451 * 19 18 17 21 21 C 1.38702 * 120.06844 * 359.67867 * 20 19 18 22 22 O 1.35961 * 120.03256 * 180.02562 * 21 20 19 23 23 C 1.38754 * 120.03874 * 185.12874 * 17 16 6 24 24 F 1.35105 * 120.06676 * 0.03181 * 23 17 16 25 25 H 1.09001 * 109.46933 * 290.09098 * 1 2 3 26 26 H 1.08996 * 109.46692 * 50.08863 * 1 2 3 27 27 H 1.08997 * 109.47084 * 170.08671 * 1 2 3 28 28 H 1.08996 * 109.47087 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46671 * 299.99758 * 3 2 1 30 30 H 1.08998 * 109.47322 * 59.99489 * 3 2 1 31 31 H 1.08999 * 109.46784 * 300.00015 * 4 2 1 32 32 H 1.09000 * 109.46767 * 60.00057 * 4 2 1 33 33 H 1.08996 * 109.47193 * 180.02562 * 4 2 1 34 34 H 1.09004 * 109.47230 * 303.32100 * 5 2 1 35 35 H 1.08993 * 109.47584 * 183.31709 * 5 2 1 36 36 H 0.96998 * 119.99845 * 4.36309 * 11 10 8 37 37 H 1.07994 * 119.97129 * 359.97438 * 18 17 16 38 38 H 1.07996 * 119.93253 * 180.29730 * 19 18 17 39 39 H 1.07996 * 119.96450 * 179.70310 * 20 19 18 40 40 H 0.96695 * 113.99677 * 269.97808 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9587 -0.6926 -1.1994 5 6 1.9587 -0.6924 1.1995 6 6 1.5180 -2.1571 1.1585 7 1 1.8337 -2.6052 0.2163 8 6 2.1481 -2.9036 2.3060 9 1 2.8563 -3.6953 2.1112 10 6 1.8203 -2.5758 3.6045 11 7 0.9202 -1.6466 3.8410 12 14 2.6550 -3.4514 5.0279 13 1 4.1206 -3.2224 4.9591 14 1 2.1312 -2.9198 6.3118 15 1 2.3772 -4.9079 4.9444 16 8 0.0950 -2.2296 1.2671 17 6 -0.5063 -3.3421 0.7681 18 6 0.2638 -4.3869 0.2777 19 6 -0.3465 -5.5206 -0.2240 20 6 -1.7255 -5.6125 -0.2504 21 6 -2.5008 -4.5690 0.2332 22 8 -3.8571 -4.6604 0.2074 23 6 -1.8908 -3.4316 0.7435 24 9 -2.6434 -2.4133 1.2147 25 1 -0.3633 0.3530 0.9651 26 1 -0.3632 0.6593 -0.7882 27 1 -0.3633 -1.0123 -0.1769 28 1 3.0487 1.3849 0.0005 29 1 1.5954 1.8987 -0.8900 30 1 1.5953 1.8988 0.8899 31 1 1.5953 -1.7202 -1.1993 32 1 1.5953 -0.1787 -2.0894 33 1 3.0487 -0.6930 -1.1992 34 1 1.5475 -0.2141 2.0885 35 1 3.0470 -0.6413 1.2298 36 1 0.4412 -1.2366 3.1039 37 1 1.3413 -4.3159 0.2922 38 1 0.2551 -6.3345 -0.6008 39 1 -2.1996 -6.4978 -0.6475 40 1 -4.2588 -4.3208 -0.6040 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233870519.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:33 Heat of formation + Delta-G solvation = 3.127956 kcal Electronic energy + Delta-G solvation = -24398.877322 eV Core-core repulsion = 20826.511044 eV Total energy + Delta-G solvation = -3572.366278 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.81753 -43.02573 -40.87182 -39.43564 -37.21046 -35.36018 -31.97261 -30.67549 -30.41216 -29.64879 -29.58475 -27.79595 -25.17234 -24.01223 -23.60729 -22.31308 -20.22050 -19.68403 -18.65805 -18.30794 -18.03488 -17.92458 -17.64921 -17.33418 -16.90233 -16.02583 -15.82010 -15.55959 -15.41418 -15.05493 -14.68768 -14.38531 -14.36257 -13.99383 -13.58225 -13.43130 -13.38266 -13.26583 -13.21071 -13.12861 -13.00992 -12.88543 -12.66778 -12.25759 -12.12629 -11.82135 -11.69857 -10.86990 -10.79859 -9.71239 -9.16502 -8.64764 -6.65404 0.00635 0.23951 0.81943 1.48587 1.58434 1.69617 2.03300 2.40003 2.48096 2.69170 2.90013 2.94338 3.05088 3.21565 3.37872 3.71582 3.86894 3.89311 3.97343 4.04834 4.12337 4.14981 4.19631 4.34658 4.35533 4.41140 4.45387 4.53509 4.64857 4.71236 4.74920 4.79024 4.97103 5.08689 5.21765 5.37061 5.50790 5.55989 5.99778 6.38657 6.52481 6.67784 7.17889 8.69372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.258 5.258 3 C -0.045 4.045 4 C -0.053 4.053 5 C 0.014 3.986 6 C 0.167 3.833 7 H 0.089 0.911 8 C -0.633 4.633 9 H 0.064 0.936 10 C 0.022 3.978 11 N -0.908 5.908 12 Si 1.073 2.927 13 H -0.264 1.264 14 H -0.303 1.303 15 H -0.289 1.289 16 O -0.322 6.322 17 C 0.128 3.872 18 C -0.185 4.185 19 C -0.068 4.068 20 C -0.166 4.166 21 C 0.102 3.898 22 O -0.502 6.502 23 C -0.007 4.007 24 F -0.147 7.147 25 H 0.094 0.906 26 H 0.145 0.855 27 H 0.102 0.898 28 H 0.131 0.869 29 H 0.145 0.855 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.147 0.853 33 H 0.136 0.864 34 H 0.106 0.894 35 H 0.153 0.847 36 H 0.285 0.715 37 H 0.153 0.847 38 H 0.162 0.838 39 H 0.155 0.845 40 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.653 9.426 -19.363 22.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 N 0.084 4.916 3 C -0.185 4.185 4 C -0.193 4.193 5 C -0.108 4.108 6 C 0.113 3.887 7 H 0.107 0.893 8 C -0.671 4.671 9 H 0.083 0.917 10 C -0.186 4.186 11 N -0.545 5.545 12 Si 0.900 3.100 13 H -0.189 1.189 14 H -0.230 1.230 15 H -0.215 1.215 16 O -0.237 6.237 17 C 0.080 3.920 18 C -0.204 4.204 19 C -0.086 4.086 20 C -0.185 4.185 21 C 0.056 3.944 22 O -0.315 6.315 23 C -0.027 4.027 24 F -0.126 7.126 25 H 0.113 0.887 26 H 0.164 0.836 27 H 0.120 0.880 28 H 0.150 0.850 29 H 0.163 0.837 30 H 0.125 0.875 31 H 0.117 0.883 32 H 0.165 0.835 33 H 0.155 0.845 34 H 0.124 0.876 35 H 0.170 0.830 36 H 0.099 0.901 37 H 0.170 0.830 38 H 0.180 0.820 39 H 0.173 0.827 40 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 4.724 9.400 -17.078 20.059 hybrid contribution -0.607 -0.027 -0.984 1.156 sum 4.117 9.373 -18.062 20.762 Atomic orbital electron populations 1.24250 0.77065 1.08732 1.08349 1.46012 1.14825 1.15966 1.14757 1.24283 1.06127 0.78586 1.09544 1.24329 1.06377 1.01617 0.87023 1.24230 1.04794 0.93970 0.87777 1.20784 0.76195 0.92512 0.99187 0.89314 1.22355 1.29532 1.22846 0.92357 0.91729 1.26146 0.95400 0.95184 1.01866 1.70947 1.21935 1.23933 1.37643 0.83411 0.76636 0.75466 0.74445 1.18851 1.22982 1.21486 1.86213 1.25588 1.36183 1.75682 1.18799 0.89535 0.89549 0.94069 1.21460 1.01379 0.93808 1.03738 1.21287 0.93959 0.97422 0.95903 1.21464 0.94171 0.99351 1.03476 1.18384 0.84069 0.92065 0.99892 1.84839 1.15216 1.85401 1.46075 1.17771 0.87127 0.88092 1.09714 1.91421 1.76046 1.58000 1.87149 0.88676 0.83643 0.87991 0.85017 0.83709 0.87469 0.88291 0.83495 0.84548 0.87565 0.82965 0.90098 0.82957 0.82037 0.82694 0.72791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.75 7.10 127.69 0.91 1.66 16 2 N -0.26 5.69 0.05 ******* -0.07 5.62 16 3 C -0.05 1.28 8.00 127.69 1.02 2.30 16 4 C -0.05 1.41 7.57 127.69 0.97 2.38 16 5 C 0.01 -0.13 3.50 86.30 0.30 0.18 16 6 C 0.17 0.15 1.36 29.85 0.04 0.19 16 7 H 0.09 -0.51 4.11 -2.39 -0.01 -0.52 16 8 C -0.63 -8.90 7.89 25.60 0.20 -8.70 16 9 H 0.06 1.00 7.81 -2.91 -0.02 0.97 16 10 C 0.02 0.48 5.24 84.66 0.44 0.92 16 11 N -0.91 -22.33 12.89 21.45 0.28 -22.06 16 12 Si 1.07 21.69 29.90 68.60 2.05 23.74 16 13 H -0.26 -4.48 7.11 99.48 0.71 -3.77 16 14 H -0.30 -7.51 7.11 99.48 0.71 -6.80 16 15 H -0.29 -6.14 7.11 99.48 0.71 -5.43 16 16 O -0.32 -1.94 4.71 -93.00 -0.44 -2.38 16 17 C 0.13 0.95 6.07 22.52 0.14 1.09 16 18 C -0.19 -0.66 8.69 22.38 0.19 -0.46 16 19 C -0.07 -0.05 10.04 22.25 0.22 0.17 16 20 C -0.17 -0.43 9.98 22.38 0.22 -0.20 16 21 C 0.10 0.72 6.71 22.51 0.15 0.87 16 22 O -0.50 -2.97 13.37 -93.11 -1.24 -4.22 16 23 C -0.01 -0.07 7.32 22.53 0.16 0.10 16 24 F -0.15 -2.04 16.95 44.97 0.76 -1.28 16 25 H 0.09 -1.14 7.95 -2.39 -0.02 -1.16 16 26 H 0.15 -3.76 7.99 -2.39 -0.02 -3.77 16 27 H 0.10 -1.17 5.22 -2.39 -0.01 -1.18 16 28 H 0.13 -4.02 8.13 -2.39 -0.02 -4.04 16 29 H 0.14 -4.88 8.07 -2.39 -0.02 -4.90 16 30 H 0.11 -2.70 8.14 -2.39 -0.02 -2.72 16 31 H 0.10 -2.18 5.88 -2.39 -0.01 -2.20 16 32 H 0.15 -4.78 8.14 -2.39 -0.02 -4.80 16 33 H 0.14 -4.04 8.14 -2.39 -0.02 -4.06 16 34 H 0.11 -0.17 5.90 -2.39 -0.01 -0.19 16 35 H 0.15 -1.95 8.11 -2.39 -0.02 -1.97 16 36 H 0.28 5.76 4.72 -92.71 -0.44 5.32 16 37 H 0.15 0.24 5.66 -2.91 -0.02 0.23 16 38 H 0.16 -0.82 8.06 -2.91 -0.02 -0.84 16 39 H 0.16 -0.25 8.06 -2.91 -0.02 -0.27 16 40 H 0.41 -2.11 9.06 -74.06 -0.67 -2.78 16 Total: 0.00 -52.00 317.78 7.04 -44.97 By element: Atomic # 1 Polarization: -45.60 SS G_CDS: 0.72 Total: -44.88 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 4.98 Total: 0.49 kcal Atomic # 7 Polarization: -16.64 SS G_CDS: 0.21 Total: -16.44 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -1.68 Total: -6.59 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.76 Total: -1.28 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: 2.05 Total: 23.74 kcal Total: -52.00 7.04 -44.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233870519.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.094 kcal (2) G-P(sol) polarization free energy of solvation -52.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds