Wall clock time and date at job start Tue Mar 31 2020 05:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.46712 * 2 1 4 4 N 1.46900 * 109.46993 * 185.35394 * 3 2 1 5 5 C 1.46896 * 110.99958 * 302.01444 * 4 3 2 6 6 C 1.50702 * 109.47143 * 290.51739 * 5 4 3 7 7 H 1.08003 * 119.99926 * 354.76147 * 6 5 4 8 8 C 1.37873 * 120.00059 * 174.75767 * 6 5 4 9 9 N 1.31517 * 120.00253 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00017 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46678 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47317 * 120.00294 * 10 8 6 13 13 H 1.48505 * 109.46817 * 240.00327 * 10 8 6 14 14 C 1.46903 * 111.00179 * 65.96579 * 4 3 2 15 15 C 1.50706 * 109.47274 * 66.04666 * 14 4 3 16 16 C 1.38500 * 119.98710 * 89.99572 * 15 14 4 17 17 F 1.35106 * 119.94483 * 359.97438 * 16 15 14 18 18 C 1.38412 * 120.11169 * 180.02562 * 16 15 14 19 19 C 1.38213 * 120.08482 * 0.02941 * 18 16 15 20 20 C 1.38755 * 119.97447 * 0.25334 * 19 18 16 21 21 N 1.39989 * 120.05538 * 179.70037 * 20 19 18 22 22 C 1.38250 * 119.98514 * 270.02897 * 15 14 4 23 23 F 1.35093 * 120.04609 * 359.96968 * 22 15 14 24 24 H 1.08994 * 109.47038 * 299.99895 * 1 2 3 25 25 H 1.09002 * 109.46808 * 60.00285 * 1 2 3 26 26 H 1.08998 * 109.46573 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47033 * 239.99872 * 2 1 3 28 28 H 1.08992 * 109.46793 * 119.99740 * 2 1 3 29 29 H 1.08995 * 109.47804 * 65.35135 * 3 2 1 30 30 H 1.09008 * 109.47280 * 305.34720 * 3 2 1 31 31 H 1.08998 * 109.47052 * 50.51706 * 5 4 3 32 32 H 1.09000 * 109.47184 * 170.51647 * 5 4 3 33 33 H 0.96997 * 119.99886 * 180.02562 * 9 8 6 34 34 H 1.09001 * 109.47297 * 306.05095 * 14 4 3 35 35 H 1.09000 * 109.47628 * 186.04506 * 14 4 3 36 36 H 1.08002 * 119.95735 * 180.02562 * 18 16 15 37 37 H 1.08002 * 120.01291 * 179.97438 * 19 18 16 38 38 H 0.96998 * 119.99890 * 359.97438 * 21 20 19 39 39 H 0.97001 * 119.99983 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5033 1.4446 -0.1292 5 6 4.1290 0.6825 0.9596 6 6 3.9566 1.4278 2.2580 7 1 3.5100 2.4112 2.2610 8 6 4.3689 0.8543 3.4421 9 7 4.9131 -0.3430 3.4384 10 14 4.1545 1.7779 5.0517 11 1 3.5221 3.0950 4.7861 12 1 3.2897 0.9879 5.9643 13 1 5.4822 1.9853 5.6839 14 6 3.9168 0.9260 -1.4400 15 6 3.4601 1.8714 -2.5212 16 6 4.2847 2.9067 -2.9291 17 9 5.4978 3.0682 -2.3568 18 6 3.8676 3.7767 -3.9215 19 6 2.6265 3.6152 -4.5079 20 6 1.7951 2.5828 -4.0978 21 7 0.5352 2.4214 -4.6861 22 6 2.2179 1.7052 -3.1048 23 9 1.4133 0.6956 -2.7071 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7571 1.9280 0.9339 30 1 1.6005 1.9833 -0.8383 31 1 3.6555 -0.2962 1.0368 32 1 5.1915 0.5567 0.7512 33 1 5.2028 -0.7466 4.2715 34 1 3.4679 -0.0541 -1.6011 35 1 5.0028 0.8376 -1.4697 36 1 4.5128 4.5829 -4.2380 37 1 2.3021 4.2950 -5.2818 38 1 0.2425 3.0318 -5.3808 39 1 -0.0452 1.6991 -4.3990 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235718730.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:55 Heat of formation + Delta-G solvation = -85.054215 kcal Electronic energy + Delta-G solvation = -23326.693687 eV Core-core repulsion = 19711.106161 eV Total energy + Delta-G solvation = -3615.587526 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.87832 -49.67632 -40.20408 -38.94511 -35.48104 -34.81305 -33.72609 -32.14905 -29.40811 -28.93291 -27.60632 -25.77219 -23.86026 -23.43402 -22.77901 -20.88120 -19.04348 -18.75810 -18.41717 -17.55991 -17.42283 -17.01599 -16.62658 -16.24612 -16.11520 -15.98037 -15.74820 -15.50094 -15.02406 -14.96959 -14.27888 -14.11386 -13.79402 -13.48948 -13.44741 -13.16997 -12.91640 -12.75313 -12.64289 -12.58430 -12.39681 -12.26691 -12.11468 -11.80513 -11.36866 -11.34336 -11.19653 -10.60251 -9.82402 -8.93979 -8.40455 -8.18872 -6.28613 0.07952 0.29011 1.39185 1.40117 1.53867 2.39531 2.51723 2.81456 3.13097 3.15810 3.39341 3.56287 3.62289 3.81761 4.10360 4.14888 4.19221 4.35339 4.45799 4.54732 4.67850 4.74382 4.87069 4.96498 5.00862 5.05658 5.09058 5.15276 5.16735 5.25494 5.29839 5.39815 5.49095 5.66967 5.79232 6.06249 6.32773 6.42634 6.58222 6.86646 6.93483 7.40341 8.91821 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.019832 B = 0.005395 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.494021 B = 5188.486694 C = 6036.729093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.150 4.150 3 C 0.075 3.925 4 N -0.535 5.535 5 C 0.204 3.796 6 C -0.516 4.516 7 H 0.057 0.943 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.967 3.033 11 H -0.265 1.265 12 H -0.277 1.277 13 H -0.278 1.278 14 C 0.091 3.909 15 C -0.107 4.107 16 C 0.054 3.946 17 F -0.151 7.151 18 C -0.103 4.103 19 C -0.139 4.139 20 C 0.187 3.813 21 N -0.858 5.858 22 C 0.031 3.969 23 F -0.136 7.136 24 H 0.050 0.950 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.034 0.966 29 H 0.055 0.945 30 H 0.071 0.929 31 H -0.015 1.015 32 H -0.007 1.007 33 H 0.264 0.736 34 H 0.041 0.959 35 H 0.066 0.934 36 H 0.167 0.833 37 H 0.181 0.819 38 H 0.418 0.582 39 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.903 7.127 -19.460 22.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.189 4.189 3 C -0.053 4.053 4 N -0.258 5.258 5 C 0.079 3.921 6 C -0.554 4.554 7 H 0.075 0.925 8 C -0.194 4.194 9 N -0.575 5.575 10 Si 0.792 3.208 11 H -0.189 1.189 12 H -0.202 1.202 13 H -0.204 1.204 14 C -0.036 4.036 15 C -0.110 4.110 16 C 0.032 3.968 17 F -0.130 7.130 18 C -0.122 4.122 19 C -0.162 4.162 20 C 0.079 3.921 21 N -0.399 5.399 22 C 0.006 3.994 23 F -0.115 7.115 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.003 0.997 32 H 0.011 0.989 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.184 0.816 37 H 0.198 0.802 38 H 0.250 0.750 39 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -9.626 7.462 -19.265 22.792 hybrid contribution 0.001 -1.250 1.319 1.817 sum -9.625 6.213 -17.946 21.291 Atomic orbital electron populations 1.21564 0.93659 1.01791 1.01860 1.22008 0.97971 0.98641 1.00316 1.21982 0.86936 0.95549 1.00816 1.62302 1.08289 1.54401 1.00786 1.19455 0.92252 0.91617 0.88815 1.21394 1.39583 1.02694 0.91743 0.92488 1.25860 0.94886 0.95807 1.02871 1.70093 1.42656 1.16600 1.28136 0.85368 0.77953 0.78775 0.78733 1.18936 1.20226 1.20374 1.20784 0.99931 0.94572 0.88345 1.19621 0.94424 0.98434 0.98516 1.17330 0.82471 0.98579 0.98429 1.91457 1.42024 1.95147 1.84356 1.21232 0.97786 0.98763 0.94421 1.20691 0.92851 0.98878 1.03734 1.17805 0.88729 0.93689 0.91839 1.42303 1.14712 1.37911 1.44987 1.16720 0.89942 0.91526 1.01214 1.91433 1.71887 1.58086 1.90099 0.93066 0.91576 0.92324 0.92416 0.94678 0.92675 0.91073 0.99683 0.98877 0.92746 0.94104 0.91586 0.81565 0.80205 0.75027 0.76551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 9.85 71.99 0.71 -3.30 16 2 C -0.15 -5.90 4.35 30.60 0.13 -5.77 16 3 C 0.08 3.15 4.61 86.30 0.40 3.55 16 4 N -0.53 -25.26 4.67 -905.36 -4.22 -29.48 16 5 C 0.20 11.53 4.50 85.56 0.39 11.91 16 6 C -0.52 -30.64 8.50 25.60 0.22 -30.42 16 7 H 0.06 3.38 7.52 -2.91 -0.02 3.36 16 8 C 0.00 0.21 5.46 84.65 0.46 0.67 16 9 N -0.93 -57.84 13.29 21.45 0.28 -57.56 16 10 Si 0.97 45.92 29.54 68.60 2.03 47.95 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 14 C 0.09 3.76 4.63 85.56 0.40 4.16 16 15 C -0.11 -3.61 4.90 -19.80 -0.10 -3.71 16 16 C 0.05 1.67 7.24 22.37 0.16 1.83 16 17 F -0.15 -5.52 16.47 44.97 0.74 -4.78 16 18 C -0.10 -2.17 10.02 22.31 0.22 -1.94 16 19 C -0.14 -2.26 9.89 22.39 0.22 -2.04 16 20 C 0.19 3.72 6.76 38.17 0.26 3.98 16 21 N -0.86 -10.86 9.10 -51.15 -0.47 -11.32 16 22 C 0.03 0.86 5.90 22.48 0.13 0.99 16 23 F -0.14 -3.97 11.88 44.97 0.53 -3.44 16 24 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.07 1.77 7.65 -2.39 -0.02 1.75 16 26 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.06 2.23 4.93 -2.39 -0.01 2.22 16 28 H 0.03 1.63 6.47 -2.39 -0.02 1.62 16 29 H 0.05 2.52 7.26 -2.39 -0.02 2.51 16 30 H 0.07 2.68 5.39 -2.38 -0.01 2.67 16 31 H -0.01 -0.87 5.90 -2.39 -0.01 -0.88 16 32 H -0.01 -0.42 7.86 -2.39 -0.02 -0.44 16 33 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 34 H 0.04 1.67 5.67 -2.39 -0.01 1.66 16 35 H 0.07 2.86 7.38 -2.39 -0.02 2.84 16 36 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 37 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.42 2.59 8.84 -92.71 -0.82 1.77 16 39 H 0.41 5.08 8.32 -92.71 -0.77 4.31 16 Total: -1.00 -71.46 316.78 2.01 -69.45 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -0.49 Total: 9.26 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: 3.60 Total: -20.08 kcal Atomic # 7 Polarization: -93.95 SS G_CDS: -4.41 Total: -98.36 kcal Atomic # 9 Polarization: -9.49 SS G_CDS: 1.27 Total: -8.21 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -71.46 2.01 -69.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235718730.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.607 kcal (2) G-P(sol) polarization free energy of solvation -71.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds