Wall clock time and date at job start Tue Mar 31 2020 05:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47184 * 2 1 4 4 C 1.52995 * 109.47184 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47150 * 180.02562 * 4 3 2 6 6 C 1.36935 * 119.99716 * 269.99936 * 5 4 3 7 7 H 1.07996 * 120.00178 * 142.96993 * 6 5 4 8 8 C 1.38814 * 119.99923 * 322.97169 * 6 5 4 9 9 N 1.31612 * 120.00082 * 159.00310 * 8 6 5 10 10 Si 1.86808 * 119.99913 * 338.99918 * 8 6 5 11 11 H 1.48497 * 109.46858 * 95.25991 * 10 8 6 12 12 H 1.48499 * 109.46996 * 215.25861 * 10 8 6 13 13 H 1.48504 * 109.47067 * 335.26266 * 10 8 6 14 14 C 1.46496 * 120.00129 * 89.99915 * 5 4 3 15 15 C 1.50706 * 109.47084 * 272.37522 * 14 5 4 16 16 C 1.38507 * 119.98476 * 95.49569 * 15 14 5 17 17 F 1.35093 * 119.94873 * 359.97438 * 16 15 14 18 18 C 1.38418 * 120.10478 * 179.97438 * 16 15 14 19 19 C 1.38205 * 120.09003 * 0.02604 * 18 16 15 20 20 C 1.38758 * 119.97197 * 0.25475 * 19 18 16 21 21 N 1.39991 * 120.05241 * 179.69513 * 20 19 18 22 22 C 1.38249 * 119.98667 * 275.47768 * 15 14 5 23 23 F 1.35101 * 120.04579 * 359.97438 * 22 15 14 24 24 H 1.09001 * 109.47042 * 59.99992 * 1 2 3 25 25 H 1.09002 * 109.47392 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47344 * 299.99873 * 1 2 3 27 27 H 1.08993 * 109.47047 * 239.99680 * 2 1 3 28 28 H 1.09001 * 109.47042 * 120.00008 * 2 1 3 29 29 H 1.09003 * 109.46877 * 59.99841 * 3 2 1 30 30 H 1.08993 * 109.46829 * 300.00053 * 3 2 1 31 31 H 1.08993 * 109.47047 * 59.99680 * 4 3 2 32 32 H 1.09007 * 109.47312 * 299.99675 * 4 3 2 33 33 H 0.97000 * 120.00181 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.47100 * 152.38000 * 14 5 4 35 35 H 1.08995 * 109.47148 * 32.37455 * 14 5 4 36 36 H 1.08004 * 119.95168 * 180.02562 * 18 16 15 37 37 H 1.08000 * 120.01835 * 179.97438 * 19 18 16 38 38 H 0.96998 * 120.00539 * 359.97438 * 21 20 19 39 39 H 0.97000 * 119.99764 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.2870 3.4696 -1.1844 7 1 4.0616 4.5216 -1.2786 8 6 4.8086 2.7721 -2.2653 9 7 4.6520 3.2375 -3.4864 10 14 5.7331 1.1729 -1.9867 11 1 4.8033 0.0276 -2.1569 12 1 6.8395 1.0628 -2.9711 13 1 6.2913 1.1571 -0.6106 14 6 4.3019 3.5140 1.2702 15 6 3.0300 4.1759 1.7344 16 6 2.2023 3.5286 2.6368 17 9 2.5360 2.3040 3.0996 18 6 1.0337 4.1344 3.0651 19 6 0.6892 5.3868 2.5931 20 6 1.5130 6.0359 1.6845 21 7 1.1624 7.3018 1.2005 22 6 2.6900 5.4289 1.2595 23 9 3.4976 6.0610 0.3800 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 3.9336 0.9285 -0.8890 32 1 3.9330 0.9289 0.8909 33 1 5.0168 2.7503 -4.2416 34 1 5.0746 4.2700 1.1302 35 1 4.6304 2.7931 2.0188 36 1 0.3904 3.6275 3.7692 37 1 -0.2230 5.8582 2.9278 38 1 0.3430 7.7258 1.4998 39 1 1.7386 7.7547 0.5650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235963265.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:44 Heat of formation + Delta-G solvation = -51.822415 kcal Electronic energy + Delta-G solvation = -23697.328679 eV Core-core repulsion = 20083.182192 eV Total energy + Delta-G solvation = -3614.146487 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.40634 -48.25830 -38.76611 -36.63039 -34.39699 -33.69146 -31.87451 -30.61814 -28.27174 -27.95753 -25.91238 -23.65661 -22.37839 -21.82199 -20.52029 -20.37183 -17.77362 -17.42693 -16.68171 -16.37254 -15.82531 -15.48650 -15.12564 -14.89841 -14.77651 -14.44804 -13.99770 -13.85632 -13.65883 -13.10906 -12.90046 -12.65959 -12.45003 -12.28492 -11.97745 -11.81582 -11.59675 -11.34898 -11.13863 -10.77617 -10.67013 -10.44105 -10.23457 -10.16916 -10.01098 -9.57863 -9.36807 -8.62403 -8.28486 -7.25039 -6.82750 -5.92761 -3.36056 1.41468 1.55489 3.35902 3.50827 3.56518 3.77039 3.89056 4.46750 4.57998 4.82457 4.95527 5.04521 5.19203 5.40502 5.44333 5.49406 5.60964 5.68230 5.79171 6.01162 6.07443 6.15972 6.24423 6.30188 6.34167 6.39286 6.44187 6.48210 6.53691 6.59846 6.61974 6.73332 7.02837 7.04994 7.19846 7.52269 7.77878 8.10694 8.45560 9.03539 9.76573 10.14446 11.22398 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.014161 B = 0.008011 C = 0.006184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.789648 B = 3494.181748 C = 4526.430049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C -0.134 4.134 4 C 0.137 3.863 5 N -0.594 5.594 6 C -0.267 4.267 7 H 0.087 0.913 8 C 0.037 3.963 9 N -0.901 5.901 10 Si 0.879 3.121 11 H -0.286 1.286 12 H -0.304 1.304 13 H -0.270 1.270 14 C 0.180 3.820 15 C -0.104 4.104 16 C 0.071 3.929 17 F -0.139 7.139 18 C -0.122 4.122 19 C -0.162 4.162 20 C 0.172 3.828 21 N -0.875 5.875 22 C 0.071 3.929 23 F -0.124 7.124 24 H 0.052 0.948 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.038 0.962 33 H 0.262 0.738 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.398 0.602 39 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.572 2.610 12.686 15.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C -0.174 4.174 4 C 0.012 3.988 5 N -0.314 5.314 6 C -0.395 4.395 7 H 0.104 0.896 8 C -0.163 4.163 9 N -0.542 5.542 10 Si 0.710 3.290 11 H -0.215 1.215 12 H -0.232 1.232 13 H -0.195 1.195 14 C 0.053 3.947 15 C -0.110 4.110 16 C 0.049 3.951 17 F -0.118 7.118 18 C -0.142 4.142 19 C -0.185 4.185 20 C 0.068 3.932 21 N -0.416 5.416 22 C 0.047 3.953 23 F -0.102 7.102 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.227 0.773 39 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -8.418 2.530 12.466 15.253 hybrid contribution 0.385 -0.679 -0.300 0.836 sum -8.033 1.851 12.166 14.695 Atomic orbital electron populations 1.21733 0.96588 1.00516 1.01529 1.21508 0.95251 0.98367 1.01132 1.22139 0.98420 0.94786 1.02060 1.21239 0.92326 0.86305 0.98942 1.44115 1.74919 1.10969 1.01366 1.18921 1.37357 0.96533 0.86725 0.89562 1.25410 0.97876 0.97786 0.95238 1.69855 1.46058 1.40547 0.97782 0.86915 0.79973 0.84427 0.77729 1.21452 1.23197 1.19471 1.19762 0.90235 0.95868 0.88826 1.20948 1.01366 0.93131 0.95537 1.16925 0.95974 0.82421 0.99795 1.91447 1.92495 1.40409 1.87411 1.20781 0.96059 0.95657 1.01684 1.20087 1.00926 0.96043 1.01455 1.17791 0.92878 0.87363 0.95212 1.42285 1.28867 1.17695 1.52748 1.16614 0.90498 0.92590 0.95620 1.91503 1.71605 1.81059 1.66081 0.92927 0.93593 0.93158 0.92590 0.92744 0.92591 0.91748 0.93000 0.94318 0.92822 0.90789 0.92674 0.85016 0.85121 0.77348 0.76884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 37.16 0.37 -1.77 16 2 C -0.12 -2.13 5.93 -26.73 -0.16 -2.28 16 3 C -0.13 -2.73 5.49 -26.73 -0.15 -2.87 16 4 C 0.14 3.09 4.53 -4.04 -0.02 3.07 16 5 N -0.59 -14.30 2.08 -174.61 -0.36 -14.66 16 6 C -0.27 -7.48 9.92 -15.06 -0.15 -7.63 16 7 H 0.09 2.61 6.64 -52.49 -0.35 2.26 16 8 C 0.04 1.08 5.33 -17.43 -0.09 0.98 16 9 N -0.90 -27.74 13.97 55.49 0.78 -26.97 16 10 Si 0.88 22.69 24.92 -169.99 -4.24 18.45 16 11 H -0.29 -7.22 6.68 56.52 0.38 -6.84 16 12 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 13 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 14 C 0.18 3.74 5.47 -5.19 -0.03 3.71 16 15 C -0.10 -1.95 5.17 -104.52 -0.54 -2.49 16 16 C 0.07 1.17 5.53 -39.42 -0.22 0.96 16 17 F -0.14 -2.37 15.80 2.25 0.04 -2.33 16 18 C -0.12 -1.66 10.02 -39.53 -0.40 -2.06 16 19 C -0.16 -2.06 9.89 -39.40 -0.39 -2.45 16 20 C 0.17 2.53 6.76 -83.62 -0.57 1.97 16 21 N -0.88 -10.10 9.10 32.48 0.30 -9.80 16 22 C 0.07 1.29 7.25 -39.26 -0.28 1.01 16 23 F -0.12 -2.51 14.57 2.25 0.03 -2.47 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.06 1.10 5.27 -51.93 -0.27 0.82 16 30 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.05 1.28 3.08 -51.93 -0.16 1.12 16 32 H 0.04 0.81 7.91 -51.92 -0.41 0.40 16 33 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 34 H 0.07 1.56 7.68 -51.93 -0.40 1.16 16 35 H 0.06 1.07 7.26 -51.93 -0.38 0.69 16 36 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 37 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.40 3.32 8.85 -40.82 -0.36 2.96 16 39 H 0.40 4.67 8.32 -40.82 -0.34 4.33 16 LS Contribution 320.85 15.07 4.84 4.84 Total: -1.00 -31.42 320.85 -6.46 -37.87 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -5.21 Total: 4.92 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -2.62 Total: -9.85 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: 0.71 Total: -51.43 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.07 Total: -4.80 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.24 Total: 18.45 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.42 -6.46 -37.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235963265.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.948 kcal (2) G-P(sol) polarization free energy of solvation -31.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds