Wall clock time and date at job start Tue Mar 31 2020 05:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47184 * 2 1 4 4 C 1.52995 * 109.47184 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47150 * 180.02562 * 4 3 2 6 6 C 1.36935 * 119.99716 * 269.99936 * 5 4 3 7 7 H 1.07996 * 120.00178 * 142.96993 * 6 5 4 8 8 C 1.38814 * 119.99923 * 322.97169 * 6 5 4 9 9 N 1.31612 * 120.00082 * 159.00310 * 8 6 5 10 10 Si 1.86808 * 119.99913 * 338.99918 * 8 6 5 11 11 H 1.48497 * 109.46858 * 95.25991 * 10 8 6 12 12 H 1.48499 * 109.46996 * 215.25861 * 10 8 6 13 13 H 1.48504 * 109.47067 * 335.26266 * 10 8 6 14 14 C 1.46496 * 120.00129 * 89.99915 * 5 4 3 15 15 C 1.50706 * 109.47084 * 272.37522 * 14 5 4 16 16 C 1.38507 * 119.98476 * 95.49569 * 15 14 5 17 17 F 1.35093 * 119.94873 * 359.97438 * 16 15 14 18 18 C 1.38418 * 120.10478 * 179.97438 * 16 15 14 19 19 C 1.38205 * 120.09003 * 0.02604 * 18 16 15 20 20 C 1.38758 * 119.97197 * 0.25475 * 19 18 16 21 21 N 1.39991 * 120.05241 * 179.69513 * 20 19 18 22 22 C 1.38249 * 119.98667 * 275.47768 * 15 14 5 23 23 F 1.35101 * 120.04579 * 359.97438 * 22 15 14 24 24 H 1.09001 * 109.47042 * 59.99992 * 1 2 3 25 25 H 1.09002 * 109.47392 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47344 * 299.99873 * 1 2 3 27 27 H 1.08993 * 109.47047 * 239.99680 * 2 1 3 28 28 H 1.09001 * 109.47042 * 120.00008 * 2 1 3 29 29 H 1.09003 * 109.46877 * 59.99841 * 3 2 1 30 30 H 1.08993 * 109.46829 * 300.00053 * 3 2 1 31 31 H 1.08993 * 109.47047 * 59.99680 * 4 3 2 32 32 H 1.09007 * 109.47312 * 299.99675 * 4 3 2 33 33 H 0.97000 * 120.00181 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.47100 * 152.38000 * 14 5 4 35 35 H 1.08995 * 109.47148 * 32.37455 * 14 5 4 36 36 H 1.08004 * 119.95168 * 180.02562 * 18 16 15 37 37 H 1.08000 * 120.01835 * 179.97438 * 19 18 16 38 38 H 0.96998 * 120.00539 * 359.97438 * 21 20 19 39 39 H 0.97000 * 119.99764 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.2870 3.4696 -1.1844 7 1 4.0616 4.5216 -1.2786 8 6 4.8086 2.7721 -2.2653 9 7 4.6520 3.2375 -3.4864 10 14 5.7331 1.1729 -1.9867 11 1 4.8033 0.0276 -2.1569 12 1 6.8395 1.0628 -2.9711 13 1 6.2913 1.1571 -0.6106 14 6 4.3019 3.5140 1.2702 15 6 3.0300 4.1759 1.7344 16 6 2.2023 3.5286 2.6368 17 9 2.5360 2.3040 3.0996 18 6 1.0337 4.1344 3.0651 19 6 0.6892 5.3868 2.5931 20 6 1.5130 6.0359 1.6845 21 7 1.1624 7.3018 1.2005 22 6 2.6900 5.4289 1.2595 23 9 3.4976 6.0610 0.3800 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 3.9336 0.9285 -0.8890 32 1 3.9330 0.9289 0.8909 33 1 5.0168 2.7503 -4.2416 34 1 5.0746 4.2700 1.1302 35 1 4.6304 2.7931 2.0188 36 1 0.3904 3.6275 3.7692 37 1 -0.2230 5.8582 2.9278 38 1 0.3430 7.7258 1.4998 39 1 1.7386 7.7547 0.5650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235963265.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:43 Heat of formation + Delta-G solvation = -71.587504 kcal Electronic energy + Delta-G solvation = -23698.185757 eV Core-core repulsion = 20083.182192 eV Total energy + Delta-G solvation = -3615.003565 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.69432 -49.66554 -39.99334 -38.34314 -35.68366 -35.13523 -33.78876 -32.11181 -29.76963 -29.19528 -27.59655 -25.35515 -23.76919 -23.12635 -22.07943 -21.96649 -19.05751 -18.79123 -18.45806 -17.61969 -17.55874 -16.81886 -16.68106 -16.26343 -16.06127 -15.91946 -15.60503 -15.35683 -15.03000 -14.79388 -14.48558 -14.28506 -13.75993 -13.61861 -13.41375 -13.37264 -13.07452 -12.94807 -12.81763 -12.44984 -12.16055 -11.95784 -11.91414 -11.70543 -11.55187 -11.33726 -11.14094 -10.63036 -9.71229 -8.80514 -8.36646 -8.17061 -5.56698 0.19688 0.35181 1.28209 1.38559 1.49957 2.42204 2.56685 2.87186 3.06903 3.26601 3.42388 3.61713 3.79538 3.94558 4.08537 4.18004 4.26520 4.36544 4.42032 4.47160 4.69315 4.82009 4.91147 4.96043 4.99294 4.99595 5.04174 5.12616 5.15292 5.23236 5.28272 5.35456 5.44907 5.55130 5.87709 5.96943 6.23842 6.43250 6.92497 6.96869 7.62163 8.03722 9.02274 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.014161 B = 0.008011 C = 0.006184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.789648 B = 3494.181748 C = 4526.430049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 C -0.123 4.123 4 C 0.132 3.868 5 N -0.605 5.605 6 C -0.248 4.248 7 H 0.051 0.949 8 C -0.020 4.020 9 N -0.950 5.950 10 Si 0.941 3.059 11 H -0.276 1.276 12 H -0.310 1.310 13 H -0.261 1.261 14 C 0.181 3.819 15 C -0.124 4.124 16 C 0.055 3.945 17 F -0.143 7.143 18 C -0.105 4.105 19 C -0.146 4.146 20 C 0.176 3.824 21 N -0.863 5.863 22 C 0.029 3.971 23 F -0.149 7.149 24 H 0.042 0.958 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.028 0.972 31 H 0.032 0.968 32 H 0.059 0.941 33 H 0.261 0.739 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.169 0.831 37 H 0.176 0.824 38 H 0.417 0.583 39 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.935 1.641 15.479 19.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C -0.162 4.162 4 C 0.008 3.992 5 N -0.326 5.326 6 C -0.378 4.378 7 H 0.069 0.931 8 C -0.216 4.216 9 N -0.594 5.594 10 Si 0.770 3.230 11 H -0.203 1.203 12 H -0.238 1.238 13 H -0.185 1.185 14 C 0.055 3.945 15 C -0.129 4.129 16 C 0.033 3.967 17 F -0.122 7.122 18 C -0.124 4.124 19 C -0.169 4.169 20 C 0.069 3.931 21 N -0.404 5.404 22 C 0.004 3.996 23 F -0.128 7.128 24 H 0.061 0.939 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.187 0.813 37 H 0.194 0.806 38 H 0.248 0.752 39 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -10.814 1.579 15.312 18.812 hybrid contribution 1.016 -0.227 -1.058 1.485 sum -9.798 1.352 14.254 17.349 Atomic orbital electron populations 1.21693 0.94456 1.02153 1.01605 1.21502 0.97167 0.95819 1.01573 1.21981 0.96682 0.96911 1.00645 1.21324 0.93904 0.85212 0.98758 1.44173 1.75573 1.11610 1.01252 1.18761 1.35489 0.95266 0.88237 0.93144 1.25991 0.99218 1.01449 0.94930 1.69978 1.48148 1.42657 0.98638 0.85899 0.78449 0.81023 0.77601 1.20345 1.23848 1.18521 1.19744 0.91561 0.95620 0.87591 1.20656 1.00968 0.93851 0.97462 1.17077 0.96931 0.82514 1.00207 1.91428 1.92695 1.40660 1.87437 1.21207 0.94746 0.95580 1.00890 1.20616 1.01458 0.95412 0.99411 1.17978 0.91763 0.88222 0.95091 1.42303 1.29441 1.16627 1.52043 1.17025 0.92191 0.93455 0.96902 1.91431 1.72623 1.81498 1.67215 0.93851 0.91190 0.92114 0.93502 0.90929 0.91707 0.95332 0.95053 0.92275 0.93004 0.92544 0.91226 0.81327 0.80644 0.75168 0.77016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.91 71.98 0.71 -3.02 16 2 C -0.12 -3.92 5.93 30.59 0.18 -3.74 16 3 C -0.12 -4.89 5.49 30.59 0.17 -4.72 16 4 C 0.13 5.91 4.53 86.38 0.39 6.30 16 5 N -0.60 -29.69 2.08 -706.35 -1.47 -31.16 16 6 C -0.25 -14.49 9.92 84.03 0.83 -13.66 16 7 H 0.05 3.27 6.64 -2.91 -0.02 3.25 16 8 C -0.02 -1.21 5.33 84.86 0.45 -0.76 16 9 N -0.95 -61.05 13.97 21.65 0.30 -60.75 16 10 Si 0.94 48.13 24.92 68.60 1.71 49.84 16 11 H -0.28 -13.52 6.68 99.48 0.66 -12.85 16 12 H -0.31 -15.98 7.11 99.48 0.71 -15.27 16 13 H -0.26 -12.78 7.11 99.48 0.71 -12.08 16 14 C 0.18 7.64 5.47 85.64 0.47 8.11 16 15 C -0.12 -4.63 5.17 -19.80 -0.10 -4.73 16 16 C 0.05 1.69 5.53 22.38 0.12 1.82 16 17 F -0.14 -4.53 15.80 44.97 0.71 -3.82 16 18 C -0.10 -2.41 10.02 22.30 0.22 -2.19 16 19 C -0.15 -3.07 9.89 22.39 0.22 -2.85 16 20 C 0.18 4.83 6.76 38.17 0.26 5.09 16 21 N -0.86 -18.19 9.10 -51.16 -0.47 -18.66 16 22 C 0.03 1.06 7.25 22.48 0.16 1.22 16 23 F -0.15 -6.38 14.57 44.97 0.66 -5.73 16 24 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 28 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.06 2.45 5.27 -2.39 -0.01 2.43 16 30 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.03 1.53 3.08 -2.39 -0.01 1.53 16 32 H 0.06 2.38 7.91 -2.38 -0.02 2.36 16 33 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 34 H 0.06 2.51 7.68 -2.39 -0.02 2.49 16 35 H 0.07 2.68 7.26 -2.39 -0.02 2.66 16 36 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 37 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 38 H 0.42 5.58 8.85 -92.71 -0.82 4.76 16 39 H 0.40 9.05 8.32 -92.71 -0.77 8.28 16 Total: -1.00 -71.86 320.85 5.00 -66.86 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -0.54 Total: 16.54 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: 4.10 Total: -13.14 kcal Atomic # 7 Polarization: -108.93 SS G_CDS: -1.63 Total: -110.56 kcal Atomic # 9 Polarization: -10.91 SS G_CDS: 1.37 Total: -9.54 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 1.71 Total: 49.84 kcal Total: -71.86 5.00 -66.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235963265.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.723 kcal (2) G-P(sol) polarization free energy of solvation -71.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds