Wall clock time and date at job start Tue Mar 31 2020 06:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.56918 * 2 1 4 4 C 1.53195 * 109.57228 * 120.24060 * 2 1 3 5 5 C 1.50707 * 109.06044 * 62.98643 * 4 2 1 6 6 O 1.21443 * 119.74998 * 208.77187 * 5 4 2 7 7 C 1.40691 * 120.49622 * 29.04844 * 5 4 2 8 8 C 1.34875 * 121.60123 * 359.66565 * 7 5 4 9 9 C 1.47030 * 119.41306 * 180.54889 * 8 7 5 10 10 C 1.39934 * 120.17318 * 245.01066 * 9 8 7 11 11 C 1.37865 * 119.81380 * 179.69833 * 10 9 8 12 12 C 1.38428 * 120.17813 * 0.59033 * 11 10 9 13 13 C 1.50693 * 119.81566 * 179.69814 * 12 11 10 14 14 C 1.50701 * 109.47352 * 269.97723 * 13 12 11 15 15 H 1.08003 * 120.00029 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00370 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99458 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00572 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46846 * 59.99905 * 18 16 14 20 20 H 1.48493 * 109.47269 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46781 * 300.00455 * 18 16 14 22 22 C 1.38421 * 120.36297 * 359.68319 * 12 11 10 23 23 C 1.37867 * 120.18043 * 0.02562 * 22 12 11 24 24 C 1.50530 * 121.17740 * 0.82918 * 8 7 5 25 25 H 1.09000 * 109.47269 * 299.75572 * 1 2 3 26 26 H 1.08998 * 109.47059 * 59.76252 * 1 2 3 27 27 H 1.09006 * 109.46622 * 179.76213 * 1 2 3 28 28 H 1.08996 * 109.47096 * 180.24480 * 3 2 1 29 29 H 1.09011 * 109.46599 * 300.24140 * 3 2 1 30 30 H 1.08996 * 109.47213 * 60.23806 * 3 2 1 31 31 H 1.09006 * 109.53775 * 303.11573 * 4 2 1 32 32 H 1.09002 * 109.54000 * 182.85942 * 4 2 1 33 33 H 1.08003 * 119.19748 * 179.97438 * 7 5 4 34 34 H 1.07998 * 120.09315 * 359.96390 * 10 9 8 35 35 H 1.07995 * 119.90988 * 180.27341 * 11 10 9 36 36 H 1.08997 * 109.47639 * 29.98184 * 13 12 11 37 37 H 1.09007 * 109.47069 * 149.98274 * 13 12 11 38 38 H 0.97001 * 119.99679 * 180.02562 * 17 16 14 39 39 H 1.07998 * 119.90830 * 180.02562 * 22 12 11 40 40 H 1.08000 * 120.08985 * 179.97438 * 23 22 12 41 41 H 1.08993 * 109.46553 * 209.89730 * 24 8 7 42 42 H 1.09001 * 109.45602 * 89.91622 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0425 1.4416 0.0000 4 6 2.0432 -0.7270 1.2470 5 6 1.5985 -2.1660 1.1957 6 8 1.4164 -2.7777 2.2290 7 6 1.3982 -2.8078 -0.0401 8 6 1.5883 -2.1639 -1.2099 9 6 1.3532 -2.8778 -2.4736 10 6 2.4161 -3.1263 -3.3492 11 6 2.1884 -3.8018 -4.5293 12 6 0.9105 -4.2230 -4.8546 13 6 0.6697 -4.9547 -6.1497 14 6 0.3474 -3.9609 -7.2358 15 1 0.3201 -2.9049 -7.0107 16 6 0.0874 -4.3996 -8.5168 17 7 0.1202 -5.6856 -8.7907 18 14 -0.3114 -3.1677 -9.8632 19 1 0.8281 -2.2301 -10.0295 20 1 -0.5500 -3.8889 -11.1391 21 1 -1.5299 -2.4049 -9.4909 22 6 -0.1472 -3.9761 -3.9965 23 6 0.0646 -3.3072 -2.8098 24 6 2.0429 -0.7293 -1.2448 25 1 -0.3634 0.5100 0.8922 26 1 -0.3633 0.5175 -0.8878 27 1 -0.3633 -1.0277 -0.0043 28 1 3.1324 1.4397 -0.0044 29 1 1.6764 1.9573 -0.8879 30 1 1.6835 1.9548 0.8921 31 1 1.6365 -0.2513 2.1395 32 1 3.1320 -0.6826 1.2727 33 1 1.0798 -3.8398 -0.0524 34 1 3.4127 -2.7937 -3.0993 35 1 3.0083 -3.9983 -5.2041 36 1 1.5645 -5.5140 -6.4229 37 1 -0.1663 -5.6436 -6.0279 38 1 -0.0624 -5.9942 -9.6920 39 1 -1.1411 -4.3084 -4.2574 40 1 -0.7618 -3.1149 -2.1416 41 1 1.6483 -0.2449 -2.1380 42 1 3.1321 -0.6939 -1.2636 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242315786.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:28 Heat of formation + Delta-G solvation = -27.298192 kcal Electronic energy + Delta-G solvation = -21477.488515 eV Core-core repulsion = 18386.342257 eV Total energy + Delta-G solvation = -3091.146258 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.152 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.66874 -38.75570 -37.52496 -34.45798 -32.96737 -30.89430 -30.48438 -29.26036 -27.65388 -27.15530 -26.90276 -23.86323 -22.10668 -21.78815 -20.53283 -19.86500 -17.37581 -16.68539 -16.36948 -15.90275 -15.30418 -15.14702 -14.73142 -14.60921 -14.44641 -14.28388 -14.01055 -13.32910 -12.97452 -12.80115 -12.61072 -12.54490 -12.45991 -12.17377 -12.01125 -11.74494 -11.41120 -11.37563 -11.19579 -11.08156 -10.86272 -10.82096 -10.59742 -10.36829 -9.70142 -9.62001 -9.52102 -9.20563 -8.49943 -8.45972 -7.82298 -6.11080 -4.15793 0.70462 1.83995 1.92058 2.90476 3.27118 3.31857 3.34356 4.10915 4.18297 4.24347 4.41125 4.45953 4.57835 4.76094 4.99028 5.04223 5.21875 5.23127 5.25669 5.35059 5.36949 5.41085 5.43680 5.45163 5.59524 5.71656 5.81337 5.84258 5.87454 5.95488 6.00306 6.04545 6.07473 6.16210 6.33980 6.48936 6.57765 6.86138 7.02783 7.05695 7.40167 7.54123 7.56463 7.73357 7.83979 8.22581 8.89048 9.48433 10.98725 Molecular weight = 284.15amu Principal moments of inertia in cm(-1) A = 0.026567 B = 0.003383 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.695292 B = 8274.821269 C = 8804.144534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.058 4.058 3 C -0.141 4.141 4 C -0.160 4.160 5 C 0.394 3.606 6 O -0.477 6.477 7 C -0.259 4.259 8 C 0.055 3.945 9 C -0.120 4.120 10 C -0.098 4.098 11 C -0.125 4.125 12 C -0.019 4.019 13 C 0.044 3.956 14 C -0.515 4.515 15 H 0.057 0.943 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.897 3.103 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.125 4.125 23 C -0.096 4.096 24 C -0.093 4.093 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.131 0.869 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.263 0.737 39 H 0.122 0.878 40 H 0.114 0.886 41 H 0.090 0.910 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.057 11.869 16.146 20.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.058 4.058 3 C -0.198 4.198 4 C -0.198 4.198 5 C 0.277 3.723 6 O -0.356 6.356 7 C -0.278 4.278 8 C 0.054 3.946 9 C -0.120 4.120 10 C -0.116 4.116 11 C -0.143 4.143 12 C -0.019 4.019 13 C 0.008 3.992 14 C -0.553 4.553 15 H 0.075 0.925 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.724 3.276 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.143 4.143 23 C -0.114 4.114 24 C -0.130 4.130 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.149 0.851 34 H 0.132 0.868 35 H 0.140 0.860 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.073 0.927 39 H 0.140 0.860 40 H 0.132 0.868 41 H 0.109 0.891 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.935 11.426 16.529 20.475 hybrid contribution -0.242 0.557 -1.006 1.175 sum 3.693 11.982 15.523 19.955 Atomic orbital electron populations 1.22005 0.93804 1.02700 1.02320 1.20598 0.96424 0.95551 0.93219 1.21849 1.01146 0.94397 1.02402 1.22252 1.02989 0.94860 0.99679 1.20882 0.73144 0.89466 0.88832 1.90577 1.40520 1.67411 1.37125 1.22150 1.10536 1.02274 0.92860 1.21300 0.86902 0.93836 0.92514 1.18678 0.94587 1.03995 0.94711 1.21078 0.97346 0.99222 0.93937 1.21034 0.97559 0.99532 0.96194 1.20891 0.91918 0.93088 0.95975 1.18416 0.98181 0.95084 0.87566 1.20985 1.48173 0.93032 0.93083 0.92480 1.25014 0.95284 0.95291 0.98672 1.69947 1.49030 1.13296 1.20894 0.86578 0.79014 0.81120 0.80879 1.20125 1.21177 1.20131 1.21043 0.99484 0.99947 0.93838 1.21131 0.95048 0.98111 0.97109 1.20983 1.01680 0.91324 0.98987 0.92322 0.91811 0.92140 0.92266 0.91931 0.92198 0.88930 0.88291 0.85106 0.86762 0.85998 0.95155 0.95154 0.92685 0.86000 0.86761 0.89115 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.09 37.16 0.30 -1.02 16 2 C -0.06 -0.46 0.78 -154.35 -0.12 -0.59 16 3 C -0.14 -0.88 8.50 37.16 0.32 -0.57 16 4 C -0.16 -1.43 4.88 -27.78 -0.14 -1.56 16 5 C 0.39 4.90 6.08 -33.38 -0.20 4.70 16 6 O -0.48 -7.58 17.82 5.42 0.10 -7.48 16 7 C -0.26 -3.25 8.42 -39.85 -0.34 -3.58 16 8 C 0.06 0.65 4.55 -102.34 -0.47 0.19 16 9 C -0.12 -1.73 5.24 -105.07 -0.55 -2.28 16 10 C -0.10 -1.48 9.77 -39.08 -0.38 -1.86 16 11 C -0.13 -2.27 9.68 -39.65 -0.38 -2.65 16 12 C -0.02 -0.38 5.08 -104.49 -0.53 -0.91 16 13 C 0.04 1.10 5.09 -29.04 -0.15 0.95 16 14 C -0.51 -13.95 9.09 -34.44 -0.31 -14.26 16 15 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 18 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 C -0.13 -2.30 9.68 -39.65 -0.38 -2.68 16 23 C -0.10 -1.50 9.72 -39.09 -0.38 -1.88 16 24 C -0.09 -0.85 4.65 -27.90 -0.13 -0.98 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.62 6.13 -51.93 -0.32 0.30 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.13 1.78 8.04 -52.48 -0.42 1.36 16 34 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 35 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 36 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 37 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 40 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 41 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 348.58 15.07 5.25 5.25 Total: -1.00 -30.12 348.58 -9.49 -39.61 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -6.61 Total: -0.80 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: -3.94 Total: -27.47 kcal Atomic # 7 Polarization: -25.82 SS G_CDS: 0.74 Total: -25.08 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: 0.10 Total: -7.48 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.12 -9.49 -39.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242315786.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.309 kcal (2) G-P(sol) polarization free energy of solvation -30.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds