Wall clock time and date at job start Tue Mar 31 2020 06:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.56918 * 2 1 4 4 C 1.53195 * 109.57228 * 120.24060 * 2 1 3 5 5 C 1.50707 * 109.06044 * 62.98643 * 4 2 1 6 6 O 1.21443 * 119.74998 * 208.77187 * 5 4 2 7 7 C 1.40691 * 120.49622 * 29.04844 * 5 4 2 8 8 C 1.34875 * 121.60123 * 359.66565 * 7 5 4 9 9 C 1.47030 * 119.41306 * 180.54889 * 8 7 5 10 10 C 1.39934 * 120.17318 * 245.01066 * 9 8 7 11 11 C 1.37865 * 119.81380 * 179.69833 * 10 9 8 12 12 C 1.38428 * 120.17813 * 0.59033 * 11 10 9 13 13 C 1.50693 * 119.81566 * 179.69814 * 12 11 10 14 14 C 1.50701 * 109.47352 * 269.97723 * 13 12 11 15 15 H 1.08003 * 120.00029 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00370 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99458 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00572 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46846 * 59.99905 * 18 16 14 20 20 H 1.48493 * 109.47269 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46781 * 300.00455 * 18 16 14 22 22 C 1.38421 * 120.36297 * 359.68319 * 12 11 10 23 23 C 1.37867 * 120.18043 * 0.02562 * 22 12 11 24 24 C 1.50530 * 121.17740 * 0.82918 * 8 7 5 25 25 H 1.09000 * 109.47269 * 299.75572 * 1 2 3 26 26 H 1.08998 * 109.47059 * 59.76252 * 1 2 3 27 27 H 1.09006 * 109.46622 * 179.76213 * 1 2 3 28 28 H 1.08996 * 109.47096 * 180.24480 * 3 2 1 29 29 H 1.09011 * 109.46599 * 300.24140 * 3 2 1 30 30 H 1.08996 * 109.47213 * 60.23806 * 3 2 1 31 31 H 1.09006 * 109.53775 * 303.11573 * 4 2 1 32 32 H 1.09002 * 109.54000 * 182.85942 * 4 2 1 33 33 H 1.08003 * 119.19748 * 179.97438 * 7 5 4 34 34 H 1.07998 * 120.09315 * 359.96390 * 10 9 8 35 35 H 1.07995 * 119.90988 * 180.27341 * 11 10 9 36 36 H 1.08997 * 109.47639 * 29.98184 * 13 12 11 37 37 H 1.09007 * 109.47069 * 149.98274 * 13 12 11 38 38 H 0.97001 * 119.99679 * 180.02562 * 17 16 14 39 39 H 1.07998 * 119.90830 * 180.02562 * 22 12 11 40 40 H 1.08000 * 120.08985 * 179.97438 * 23 22 12 41 41 H 1.08993 * 109.46553 * 209.89730 * 24 8 7 42 42 H 1.09001 * 109.45602 * 89.91622 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0425 1.4416 0.0000 4 6 2.0432 -0.7270 1.2470 5 6 1.5985 -2.1660 1.1957 6 8 1.4164 -2.7777 2.2290 7 6 1.3982 -2.8078 -0.0401 8 6 1.5883 -2.1639 -1.2099 9 6 1.3532 -2.8778 -2.4736 10 6 2.4161 -3.1263 -3.3492 11 6 2.1884 -3.8018 -4.5293 12 6 0.9105 -4.2230 -4.8546 13 6 0.6697 -4.9547 -6.1497 14 6 0.3474 -3.9609 -7.2358 15 1 0.3201 -2.9049 -7.0107 16 6 0.0874 -4.3996 -8.5168 17 7 0.1202 -5.6856 -8.7907 18 14 -0.3114 -3.1677 -9.8632 19 1 0.8281 -2.2301 -10.0295 20 1 -0.5500 -3.8889 -11.1391 21 1 -1.5299 -2.4049 -9.4909 22 6 -0.1472 -3.9761 -3.9965 23 6 0.0646 -3.3072 -2.8098 24 6 2.0429 -0.7293 -1.2448 25 1 -0.3634 0.5100 0.8922 26 1 -0.3633 0.5175 -0.8878 27 1 -0.3633 -1.0277 -0.0043 28 1 3.1324 1.4397 -0.0044 29 1 1.6764 1.9573 -0.8879 30 1 1.6835 1.9548 0.8921 31 1 1.6365 -0.2513 2.1395 32 1 3.1320 -0.6826 1.2727 33 1 1.0798 -3.8398 -0.0524 34 1 3.4127 -2.7937 -3.0993 35 1 3.0083 -3.9983 -5.2041 36 1 1.5645 -5.5140 -6.4229 37 1 -0.1663 -5.6436 -6.0279 38 1 -0.0624 -5.9942 -9.6920 39 1 -1.1411 -4.3084 -4.2574 40 1 -0.7618 -3.1149 -2.1416 41 1 1.6483 -0.2449 -2.1380 42 1 3.1321 -0.6939 -1.2636 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242315786.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:28 Heat of formation + Delta-G solvation = -41.164412 kcal Electronic energy + Delta-G solvation = -21478.089799 eV Core-core repulsion = 18386.342257 eV Total energy + Delta-G solvation = -3091.747542 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.152 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.58317 -40.07913 -38.46599 -35.86346 -34.62615 -32.36975 -31.84106 -30.27626 -28.53195 -28.31527 -27.73596 -25.55033 -23.44727 -23.17199 -21.60492 -20.89271 -18.52968 -18.21025 -17.71008 -16.87196 -16.75563 -16.22688 -16.04472 -15.88381 -15.65955 -15.27132 -14.81431 -14.52712 -14.30286 -14.15031 -14.11307 -13.57346 -13.34557 -13.15102 -13.05630 -12.96435 -12.67968 -12.65107 -12.55680 -12.39435 -12.06005 -11.86975 -11.70497 -11.60440 -11.55843 -11.36031 -10.61295 -10.56918 -10.25517 -9.81817 -9.27440 -8.21297 -6.35201 -0.31514 0.50863 0.55855 1.40366 1.42739 1.51090 1.94678 2.38960 2.88826 3.09764 3.25834 3.44295 3.70085 3.81125 3.88729 4.05327 4.12619 4.23934 4.31286 4.34232 4.53457 4.62467 4.63690 4.66834 4.74233 4.84305 4.90461 4.95803 5.02290 5.06942 5.12108 5.17720 5.18478 5.25232 5.32679 5.35976 5.38443 5.43222 5.49720 5.56128 5.59437 5.73137 6.03684 6.06247 6.19824 6.59997 6.77538 7.33743 8.87863 Molecular weight = 284.15amu Principal moments of inertia in cm(-1) A = 0.026567 B = 0.003383 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.695292 B = 8274.821269 C = 8804.144534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.050 4.050 3 C -0.137 4.137 4 C -0.154 4.154 5 C 0.397 3.603 6 O -0.521 6.521 7 C -0.268 4.268 8 C 0.070 3.930 9 C -0.106 4.106 10 C -0.087 4.087 11 C -0.134 4.134 12 C -0.052 4.052 13 C 0.053 3.947 14 C -0.529 4.529 15 H 0.057 0.943 16 C 0.004 3.996 17 N -0.931 5.931 18 Si 0.966 3.034 19 H -0.265 1.265 20 H -0.282 1.282 21 H -0.268 1.268 22 C -0.136 4.136 23 C -0.093 4.093 24 C -0.094 4.094 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.122 0.878 33 H 0.112 0.888 34 H 0.152 0.848 35 H 0.120 0.880 36 H 0.005 0.995 37 H 0.002 0.998 38 H 0.266 0.734 39 H 0.114 0.886 40 H 0.136 0.864 41 H 0.095 0.905 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.203 15.248 17.198 23.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.050 4.050 3 C -0.194 4.194 4 C -0.191 4.191 5 C 0.282 3.718 6 O -0.403 6.403 7 C -0.287 4.287 8 C 0.069 3.931 9 C -0.106 4.106 10 C -0.105 4.105 11 C -0.152 4.152 12 C -0.052 4.052 13 C 0.016 3.984 14 C -0.567 4.567 15 H 0.075 0.925 16 C -0.194 4.194 17 N -0.571 5.571 18 Si 0.790 3.210 19 H -0.190 1.190 20 H -0.207 1.207 21 H -0.193 1.193 22 C -0.154 4.154 23 C -0.111 4.111 24 C -0.130 4.130 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.059 0.941 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.140 0.860 33 H 0.131 0.869 34 H 0.169 0.831 35 H 0.138 0.862 36 H 0.023 0.977 37 H 0.020 0.980 38 H 0.074 0.926 39 H 0.132 0.868 40 H 0.154 0.846 41 H 0.113 0.887 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.083 14.820 17.582 23.550 hybrid contribution -0.601 -0.525 -1.246 1.479 sum 4.482 14.295 16.337 22.166 Atomic orbital electron populations 1.22055 0.94622 1.01601 1.02997 1.20563 0.95727 0.96626 0.92066 1.21827 1.01998 0.92640 1.02976 1.22276 1.04347 0.91957 1.00547 1.21332 0.71691 0.90980 0.87802 1.90570 1.42761 1.68758 1.38257 1.22084 1.11233 1.01800 0.93618 1.21318 0.86123 0.95103 0.90521 1.18982 0.93881 1.02367 0.95325 1.21369 0.99183 0.97574 0.92366 1.21070 0.96363 1.00158 0.97623 1.20566 0.94003 0.95560 0.95116 1.18150 0.95719 0.94571 0.89967 1.21338 1.47887 0.93402 0.94084 0.92459 1.25947 0.95019 0.97180 1.01272 1.70080 1.50105 1.15351 1.21542 0.85482 0.79196 0.78698 0.77611 1.19003 1.20742 1.19262 1.21013 0.98690 1.00902 0.94826 1.21321 0.96562 0.97111 0.96126 1.21130 1.03219 0.88940 0.99758 0.91526 0.91404 0.94084 0.90917 0.91619 0.91479 0.88122 0.85966 0.86945 0.83070 0.86200 0.97692 0.98003 0.92553 0.86764 0.84635 0.88687 0.86386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 8.09 71.98 0.58 -1.70 16 2 C -0.05 -0.60 0.78 -52.08 -0.04 -0.64 16 3 C -0.14 -1.09 8.50 71.98 0.61 -0.48 16 4 C -0.15 -2.20 4.88 29.92 0.15 -2.05 16 5 C 0.40 9.16 6.08 26.29 0.16 9.32 16 6 O -0.52 -16.28 17.82 -3.54 -0.06 -16.35 16 7 C -0.27 -6.28 8.42 22.10 0.19 -6.09 16 8 C 0.07 1.45 4.55 -18.38 -0.08 1.36 16 9 C -0.11 -2.81 5.24 -20.15 -0.11 -2.92 16 10 C -0.09 -2.43 9.77 22.59 0.22 -2.21 16 11 C -0.13 -4.85 9.68 22.23 0.22 -4.63 16 12 C -0.05 -2.23 5.08 -19.78 -0.10 -2.33 16 13 C 0.05 2.78 5.09 29.10 0.15 2.93 16 14 C -0.53 -29.62 9.09 25.60 0.23 -29.39 16 15 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 16 C 0.00 0.23 5.46 84.65 0.46 0.69 16 17 N -0.93 -55.63 13.29 21.45 0.28 -55.34 16 18 Si 0.97 43.35 29.54 68.60 2.03 45.37 16 19 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 C -0.14 -5.13 9.68 22.23 0.22 -4.92 16 23 C -0.09 -2.82 9.72 22.59 0.22 -2.60 16 24 C -0.09 -1.31 4.65 29.83 0.14 -1.17 16 25 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 26 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.04 0.76 6.13 -2.38 -0.01 0.74 16 28 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.12 1.25 8.14 -2.39 -0.02 1.24 16 33 H 0.11 3.02 8.04 -2.91 -0.02 3.00 16 34 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 35 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 36 H 0.00 0.27 8.08 -2.39 -0.02 0.25 16 37 H 0.00 0.09 8.08 -2.38 -0.02 0.08 16 38 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 39 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 40 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 41 H 0.09 1.34 8.10 -2.39 -0.02 1.32 16 42 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -68.24 348.58 6.44 -61.80 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 0.98 Total: 11.37 kcal Atomic # 6 Polarization: -50.06 SS G_CDS: 3.21 Total: -46.85 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 0.28 Total: -55.34 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.06 Total: -16.35 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -68.24 6.44 -61.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242315786.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.636 kcal (2) G-P(sol) polarization free energy of solvation -68.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds