Wall clock time and date at job start Tue Mar 31 2020 06:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47150 * 2 1 4 4 O 1.42903 * 109.47225 * 180.02562 * 3 2 1 5 5 C 1.35881 * 117.00312 * 180.02562 * 4 3 2 6 6 C 1.39857 * 119.56278 * 0.02562 * 5 4 3 7 7 C 1.35985 * 120.92645 * 179.76009 * 6 5 4 8 8 C 1.40590 * 119.73631 * 0.46516 * 7 6 5 9 9 C 1.40525 * 121.22650 * 179.79541 * 8 7 6 10 10 C 1.36100 * 119.67502 * 179.72896 * 9 8 7 11 11 C 1.50701 * 119.50458 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47273 * 89.99588 * 11 10 9 13 13 C 1.50701 * 109.47273 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99855 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00224 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99805 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00262 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47148 * 60.00052 * 17 15 13 19 19 H 1.48502 * 109.47564 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.47259 * 300.00557 * 17 15 13 21 21 C 1.39375 * 120.99100 * 0.02562 * 10 9 8 22 22 C 1.36088 * 120.98437 * 359.97438 * 21 10 9 23 23 C 1.40572 * 119.65735 * 359.97438 * 22 21 10 24 24 C 1.36563 * 119.57176 * 179.97438 * 5 4 3 25 25 H 1.09000 * 109.47380 * 300.00141 * 1 2 3 26 26 H 1.09008 * 109.46842 * 59.99772 * 1 2 3 27 27 H 1.08995 * 109.47192 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46976 * 240.00070 * 2 1 3 29 29 H 1.08997 * 109.47288 * 120.00076 * 2 1 3 30 30 H 1.09000 * 109.47095 * 59.99684 * 3 2 1 31 31 H 1.08997 * 109.47087 * 300.00199 * 3 2 1 32 32 H 1.07993 * 119.53932 * 359.97438 * 6 5 4 33 33 H 1.08003 * 120.13508 * 180.25339 * 7 6 5 34 34 H 1.08001 * 120.16035 * 359.74728 * 9 8 7 35 35 H 1.08998 * 109.47209 * 209.99736 * 11 10 9 36 36 H 1.09001 * 109.46652 * 329.99781 * 11 10 9 37 37 H 1.08998 * 109.47123 * 300.00200 * 12 11 10 38 38 H 1.09004 * 109.46877 * 60.00029 * 12 11 10 39 39 H 0.97007 * 119.99742 * 180.02562 * 16 15 13 40 40 H 1.08006 * 119.50526 * 179.97438 * 21 10 9 41 41 H 1.08001 * 120.17301 * 179.97438 * 22 21 10 42 42 H 1.08008 * 120.18837 * 359.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4425 -0.0006 5 6 4.0860 2.6532 -0.0001 6 6 3.3154 3.8203 0.0014 7 6 3.9038 5.0463 0.0068 8 6 5.3061 5.1468 0.0010 9 6 5.9468 6.3974 0.0020 10 6 7.3065 6.4579 0.0018 11 6 7.9897 7.8012 0.0035 12 6 8.2211 8.2539 1.4465 13 6 8.9048 9.5969 1.4482 14 1 9.1494 10.0795 0.5134 15 6 9.2171 10.2100 2.6429 16 7 8.9188 9.6226 3.7812 17 14 10.0640 11.8750 2.6450 18 1 9.2077 12.8667 1.9459 19 1 10.2887 12.3144 4.0456 20 1 11.3693 11.7673 1.9449 21 6 8.0765 5.2962 0.0001 22 6 7.4912 4.0677 -0.0010 23 6 6.0892 3.9652 0.0003 24 6 5.4502 2.7144 -0.0001 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 2.2380 3.7470 0.0018 33 1 3.2963 5.9393 0.0121 34 1 5.3632 7.3062 0.0032 35 1 8.9476 7.7223 -0.5106 36 1 7.3609 8.5291 -0.5093 37 1 7.2632 8.3328 1.9606 38 1 8.8498 7.5259 1.9593 39 1 9.1382 10.0541 4.6218 40 1 9.1539 5.3722 -0.0005 41 1 8.1005 3.1760 -0.0027 42 1 6.0347 1.8061 -0.0001 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060485.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:29 Heat of formation + Delta-G solvation = -26.789957 kcal Electronic energy + Delta-G solvation = -20668.533756 eV Core-core repulsion = 17577.409537 eV Total energy + Delta-G solvation = -3091.124219 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.152 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.52463 -38.99415 -36.17284 -34.22687 -33.57851 -32.49647 -31.08851 -29.51094 -28.35523 -26.63318 -24.90002 -23.44690 -22.22121 -21.94621 -21.42097 -20.34860 -18.24582 -16.85693 -16.50072 -16.48172 -16.03517 -15.39336 -14.61300 -14.48864 -14.43294 -14.39541 -13.50879 -13.26202 -13.20592 -12.92068 -12.87443 -12.48896 -12.39339 -12.27836 -11.96524 -11.76072 -11.39893 -11.22068 -11.17049 -10.90380 -10.87224 -10.57503 -10.49594 -10.35434 -9.82799 -9.73394 -9.22512 -9.07552 -8.34949 -8.12522 -7.35004 -5.99389 -4.02770 0.76421 1.28444 2.31934 3.06764 3.21179 3.33345 3.37879 3.40251 4.36934 4.46707 4.51392 4.52548 4.73770 4.83530 4.87559 5.00672 5.05707 5.15752 5.27207 5.28341 5.35854 5.39456 5.47309 5.56212 5.58449 5.68152 5.69362 5.79838 5.89619 6.05412 6.18663 6.29243 6.35913 6.42150 6.54283 6.65938 6.81181 6.88283 6.99768 7.13504 7.31825 7.42686 7.67882 7.81954 8.00337 8.40573 9.04128 9.61180 11.11488 Molecular weight = 284.15amu Principal moments of inertia in cm(-1) A = 0.037421 B = 0.002585 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.061966 B =10828.610010 C =11127.202717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.059 3.941 4 O -0.320 6.320 5 C 0.117 3.883 6 C -0.197 4.197 7 C -0.064 4.064 8 C -0.074 4.074 9 C -0.105 4.105 10 C -0.062 4.062 11 C -0.081 4.081 12 C 0.030 3.970 13 C -0.523 4.523 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.090 4.090 22 C -0.124 4.124 23 C -0.024 4.024 24 C -0.149 4.149 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.017 0.983 38 H 0.017 0.983 39 H 0.261 0.739 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.246 -17.296 -8.842 24.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.017 4.017 4 O -0.234 6.234 5 C 0.072 3.928 6 C -0.216 4.216 7 C -0.082 4.082 8 C -0.074 4.074 9 C -0.123 4.123 10 C -0.062 4.062 11 C -0.119 4.119 12 C -0.007 4.007 13 C -0.561 4.561 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.108 4.108 22 C -0.142 4.142 23 C -0.024 4.024 24 C -0.168 4.168 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.071 0.929 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.163 -17.466 -8.643 24.090 hybrid contribution 0.260 1.102 0.230 1.155 sum -13.902 -16.364 -8.413 23.062 Atomic orbital electron populations 1.21694 0.94338 1.02460 1.02239 1.21481 0.95959 0.95023 1.03667 1.22826 0.78966 0.98560 1.01319 1.86036 1.20893 1.27285 1.89227 1.18517 0.92059 0.83784 0.98404 1.20924 0.99764 0.92493 1.08402 1.20897 0.93648 0.97186 0.96460 1.18069 0.93049 0.93362 1.02946 1.20874 0.94527 0.95986 1.00956 1.20069 0.93620 0.96642 0.95913 1.20880 0.98635 0.90556 1.01782 1.19074 0.97106 0.95814 0.88707 1.21218 1.38739 1.03872 0.92301 0.92632 1.25032 0.95961 0.97798 0.95672 1.69968 1.47481 1.38596 0.97276 0.86649 0.80085 0.84272 0.76929 1.20234 1.21306 1.20228 1.20914 1.00297 0.91868 0.97736 1.20879 0.92895 0.97880 1.02530 1.17713 0.93533 0.91656 0.99482 1.20087 0.91467 0.97410 1.07859 0.92331 0.92383 0.91785 0.90894 0.90844 0.92135 0.92207 0.85800 0.85315 0.85676 0.92149 0.92178 0.96443 0.96429 0.92921 0.85830 0.85864 0.85287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.16 0.37 -0.41 16 2 C -0.12 -0.86 6.30 -26.73 -0.17 -1.02 16 3 C 0.06 0.51 4.73 37.16 0.18 0.69 16 4 O -0.32 -3.91 10.11 -19.37 -0.20 -4.11 16 5 C 0.12 1.58 6.63 -39.58 -0.26 1.31 16 6 C -0.20 -2.46 8.93 -39.78 -0.36 -2.81 16 7 C -0.06 -0.87 9.76 -39.50 -0.39 -1.25 16 8 C -0.07 -1.19 5.74 -106.81 -0.61 -1.80 16 9 C -0.11 -1.82 9.37 -39.49 -0.37 -2.19 16 10 C -0.06 -1.15 5.10 -104.97 -0.54 -1.69 16 11 C -0.08 -1.68 5.25 -27.88 -0.15 -1.82 16 12 C 0.03 0.78 4.95 -27.88 -0.14 0.64 16 13 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 14 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 17 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.09 -1.51 9.58 -39.93 -0.38 -1.90 16 22 C -0.12 -1.88 9.77 -39.47 -0.39 -2.27 16 23 C -0.02 -0.37 5.74 -106.84 -0.61 -0.99 16 24 C -0.15 -2.13 9.68 -39.35 -0.38 -2.51 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.28 8.14 -51.92 -0.42 -0.15 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.49 7.63 -51.93 -0.40 0.10 16 31 H 0.06 0.47 7.64 -51.93 -0.40 0.07 16 32 H 0.12 1.20 6.21 -52.49 -0.33 0.88 16 33 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 34 H 0.13 2.01 8.06 -52.49 -0.42 1.58 16 35 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 36 H 0.06 1.20 8.07 -51.93 -0.42 0.78 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.12 1.92 8.06 -52.48 -0.42 1.49 16 41 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 351.25 15.07 5.29 5.29 Total: -1.00 -31.46 351.25 -10.36 -41.82 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -6.57 Total: -1.74 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: -4.60 Total: -31.56 kcal Atomic # 7 Polarization: -27.07 SS G_CDS: 0.74 Total: -26.33 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: -0.20 Total: -4.11 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.46 -10.36 -41.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060485.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.030 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds