Wall clock time and date at job start Tue Mar 31 2020 06:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47150 * 2 1 4 4 O 1.42903 * 109.47225 * 180.02562 * 3 2 1 5 5 C 1.35881 * 117.00312 * 180.02562 * 4 3 2 6 6 C 1.39857 * 119.56278 * 0.02562 * 5 4 3 7 7 C 1.35985 * 120.92645 * 179.76009 * 6 5 4 8 8 C 1.40590 * 119.73631 * 0.46516 * 7 6 5 9 9 C 1.40525 * 121.22650 * 179.79541 * 8 7 6 10 10 C 1.36100 * 119.67502 * 179.72896 * 9 8 7 11 11 C 1.50701 * 119.50458 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47273 * 89.99588 * 11 10 9 13 13 C 1.50701 * 109.47273 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99855 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00224 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99805 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00262 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47148 * 60.00052 * 17 15 13 19 19 H 1.48502 * 109.47564 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.47259 * 300.00557 * 17 15 13 21 21 C 1.39375 * 120.99100 * 0.02562 * 10 9 8 22 22 C 1.36088 * 120.98437 * 359.97438 * 21 10 9 23 23 C 1.40572 * 119.65735 * 359.97438 * 22 21 10 24 24 C 1.36563 * 119.57176 * 179.97438 * 5 4 3 25 25 H 1.09000 * 109.47380 * 300.00141 * 1 2 3 26 26 H 1.09008 * 109.46842 * 59.99772 * 1 2 3 27 27 H 1.08995 * 109.47192 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46976 * 240.00070 * 2 1 3 29 29 H 1.08997 * 109.47288 * 120.00076 * 2 1 3 30 30 H 1.09000 * 109.47095 * 59.99684 * 3 2 1 31 31 H 1.08997 * 109.47087 * 300.00199 * 3 2 1 32 32 H 1.07993 * 119.53932 * 359.97438 * 6 5 4 33 33 H 1.08003 * 120.13508 * 180.25339 * 7 6 5 34 34 H 1.08001 * 120.16035 * 359.74728 * 9 8 7 35 35 H 1.08998 * 109.47209 * 209.99736 * 11 10 9 36 36 H 1.09001 * 109.46652 * 329.99781 * 11 10 9 37 37 H 1.08998 * 109.47123 * 300.00200 * 12 11 10 38 38 H 1.09004 * 109.46877 * 60.00029 * 12 11 10 39 39 H 0.97007 * 119.99742 * 180.02562 * 16 15 13 40 40 H 1.08006 * 119.50526 * 179.97438 * 21 10 9 41 41 H 1.08001 * 120.17301 * 179.97438 * 22 21 10 42 42 H 1.08008 * 120.18837 * 359.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4425 -0.0006 5 6 4.0860 2.6532 -0.0001 6 6 3.3154 3.8203 0.0014 7 6 3.9038 5.0463 0.0068 8 6 5.3061 5.1468 0.0010 9 6 5.9468 6.3974 0.0020 10 6 7.3065 6.4579 0.0018 11 6 7.9897 7.8012 0.0035 12 6 8.2211 8.2539 1.4465 13 6 8.9048 9.5969 1.4482 14 1 9.1494 10.0795 0.5134 15 6 9.2171 10.2100 2.6429 16 7 8.9188 9.6226 3.7812 17 14 10.0640 11.8750 2.6450 18 1 9.2077 12.8667 1.9459 19 1 10.2887 12.3144 4.0456 20 1 11.3693 11.7673 1.9449 21 6 8.0765 5.2962 0.0001 22 6 7.4912 4.0677 -0.0010 23 6 6.0892 3.9652 0.0003 24 6 5.4502 2.7144 -0.0001 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 2.2380 3.7470 0.0018 33 1 3.2963 5.9393 0.0121 34 1 5.3632 7.3062 0.0032 35 1 8.9476 7.7223 -0.5106 36 1 7.3609 8.5291 -0.5093 37 1 7.2632 8.3328 1.9606 38 1 8.8498 7.5259 1.9593 39 1 9.1382 10.0541 4.6218 40 1 9.1539 5.3722 -0.0005 41 1 8.1005 3.1760 -0.0027 42 1 6.0347 1.8061 -0.0001 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060485.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:29 Heat of formation + Delta-G solvation = -41.428716 kcal Electronic energy + Delta-G solvation = -20669.168540 eV Core-core repulsion = 17577.409537 eV Total energy + Delta-G solvation = -3091.759003 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.152 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.60888 -40.04876 -37.38986 -35.51722 -34.75011 -33.97367 -32.60990 -30.68996 -29.78784 -27.51855 -26.54824 -24.54296 -23.73541 -23.02631 -22.23878 -21.89709 -19.26057 -18.57612 -17.89756 -17.31728 -17.22625 -16.55807 -16.50205 -15.69651 -15.50545 -15.15970 -14.72732 -14.61815 -14.36667 -14.21903 -14.05651 -13.84373 -13.72866 -13.30530 -12.97885 -12.83637 -12.80555 -12.65171 -12.52839 -12.16250 -12.02188 -11.82438 -11.74599 -11.55525 -11.52705 -11.34448 -11.16545 -10.55846 -10.52788 -9.30536 -8.54729 -8.18742 -6.31567 -0.37892 0.09263 1.13396 1.40461 1.43852 1.51776 2.03756 2.22053 2.41645 3.13301 3.17029 3.63853 3.86808 3.92926 3.96575 3.98871 4.04152 4.22057 4.29920 4.33750 4.34899 4.47099 4.53519 4.56597 4.64835 4.79530 4.84522 4.87624 4.94192 5.00849 5.13081 5.15410 5.19322 5.26727 5.30698 5.33308 5.37793 5.49599 5.57740 5.59513 5.76355 5.84381 5.90870 6.07098 6.23289 6.44986 6.85386 7.37784 8.92121 Molecular weight = 284.15amu Principal moments of inertia in cm(-1) A = 0.037421 B = 0.002585 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.061966 B =10828.610010 C =11127.202717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.049 3.951 4 O -0.330 6.330 5 C 0.120 3.880 6 C -0.189 4.189 7 C -0.070 4.070 8 C -0.094 4.094 9 C -0.110 4.110 10 C -0.089 4.089 11 C -0.066 4.066 12 C 0.038 3.962 13 C -0.544 4.544 14 H 0.064 0.936 15 C -0.003 4.003 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.266 1.266 21 C -0.109 4.109 22 C -0.118 4.118 23 C -0.036 4.036 24 C -0.164 4.164 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.156 0.844 33 H 0.151 0.849 34 H 0.129 0.871 35 H 0.065 0.935 36 H 0.064 0.936 37 H -0.012 1.012 38 H -0.011 1.011 39 H 0.263 0.737 40 H 0.129 0.871 41 H 0.151 0.849 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.609 -17.875 -9.729 25.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C -0.026 4.026 4 O -0.244 6.244 5 C 0.075 3.925 6 C -0.207 4.207 7 C -0.088 4.088 8 C -0.094 4.094 9 C -0.128 4.128 10 C -0.089 4.089 11 C -0.103 4.103 12 C 0.001 3.999 13 C -0.582 4.582 14 H 0.082 0.918 15 C -0.200 4.200 16 N -0.574 5.574 17 Si 0.792 3.208 18 H -0.190 1.190 19 H -0.210 1.210 20 H -0.191 1.191 21 C -0.127 4.127 22 C -0.136 4.136 23 C -0.036 4.036 24 C -0.183 4.183 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.173 0.827 33 H 0.168 0.832 34 H 0.147 0.853 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.006 0.994 38 H 0.007 0.993 39 H 0.072 0.928 40 H 0.146 0.854 41 H 0.168 0.832 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -15.537 -18.057 -9.551 25.665 hybrid contribution 0.517 1.107 0.509 1.323 sum -15.019 -16.950 -9.042 24.386 Atomic orbital electron populations 1.21687 0.92837 1.03201 1.02702 1.21497 0.97129 0.93841 1.03428 1.23153 0.77068 1.00049 1.02313 1.86044 1.22960 1.26661 1.88780 1.18699 0.92133 0.84674 0.96992 1.21253 1.01359 0.91580 1.06540 1.21156 0.92751 0.98680 0.96199 1.18287 0.94470 0.92910 1.03712 1.21001 0.94234 0.96961 1.00603 1.19932 0.94324 0.95926 0.98748 1.20593 0.99377 0.92218 0.98115 1.18906 0.94675 0.94697 0.91666 1.21688 1.38802 1.04859 0.92833 0.91792 1.26028 0.96636 1.02168 0.95188 1.70117 1.48741 1.40576 0.98007 0.85469 0.79209 0.79011 0.77158 1.19020 1.20958 1.19061 1.20997 1.00581 0.92107 0.99034 1.21168 0.93246 0.98181 1.00963 1.17963 0.93875 0.92295 0.99481 1.20233 0.92281 0.97268 1.08497 0.91983 0.91800 0.90973 0.91037 0.91260 0.91267 0.90953 0.82686 0.83177 0.85306 0.91655 0.91737 0.99351 0.99297 0.92792 0.85356 0.83172 0.83986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 71.98 0.71 -0.43 16 2 C -0.12 -1.41 6.30 30.60 0.19 -1.22 16 3 C 0.05 0.72 4.73 71.98 0.34 1.06 16 4 O -0.33 -7.33 10.11 -92.21 -0.93 -8.27 16 5 C 0.12 2.99 6.63 22.27 0.15 3.14 16 6 C -0.19 -4.23 8.93 22.14 0.20 -4.03 16 7 C -0.07 -1.78 9.76 22.32 0.22 -1.57 16 8 C -0.09 -2.97 5.74 -21.28 -0.12 -3.09 16 9 C -0.11 -3.87 9.37 22.33 0.21 -3.66 16 10 C -0.09 -3.40 5.10 -20.09 -0.10 -3.50 16 11 C -0.07 -2.81 5.25 29.85 0.16 -2.65 16 12 C 0.04 2.05 4.95 29.85 0.15 2.19 16 13 C -0.54 -31.36 9.11 25.60 0.23 -31.12 16 14 H 0.06 3.49 7.74 -2.91 -0.02 3.46 16 15 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 16 N -0.93 -58.01 13.29 21.45 0.28 -57.73 16 17 Si 0.97 44.61 29.54 68.60 2.03 46.64 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 21 C -0.11 -3.75 9.58 22.04 0.21 -3.54 16 22 C -0.12 -3.55 9.77 22.34 0.22 -3.33 16 23 C -0.04 -1.11 5.74 -21.30 -0.12 -1.23 16 24 C -0.16 -4.45 9.68 22.42 0.22 -4.23 16 25 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 27 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.91 7.63 -2.39 -0.02 0.90 16 31 H 0.07 0.90 7.64 -2.39 -0.02 0.88 16 32 H 0.16 2.43 6.21 -2.91 -0.02 2.41 16 33 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 34 H 0.13 4.24 8.06 -2.91 -0.02 4.21 16 35 H 0.06 2.66 8.08 -2.39 -0.02 2.64 16 36 H 0.06 2.63 8.07 -2.39 -0.02 2.61 16 37 H -0.01 -0.71 8.14 -2.39 -0.02 -0.72 16 38 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 39 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 40 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 41 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 42 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -68.81 351.25 5.68 -63.13 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.98 Total: 13.12 kcal Atomic # 6 Polarization: -60.22 SS G_CDS: 3.32 Total: -56.90 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 0.28 Total: -57.73 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: -0.93 Total: -8.27 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -68.81 5.68 -63.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060485.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.700 kcal (2) G-P(sol) polarization free energy of solvation -68.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds