Wall clock time and date at job start Tue Mar 31 2020 06:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47381 * 2 1 4 4 O 1.42901 * 109.47168 * 119.99610 * 2 1 3 5 5 C 1.35897 * 116.99770 * 84.63884 * 4 2 1 6 6 C 1.39846 * 119.56701 * 354.58896 * 5 4 2 7 7 C 1.35987 * 120.93267 * 180.02562 * 6 5 4 8 8 C 1.40587 * 119.73038 * 359.97438 * 7 6 5 9 9 C 1.40523 * 121.22356 * 180.02562 * 8 7 6 10 10 C 1.36107 * 119.67175 * 179.15658 * 9 8 7 11 11 C 1.39379 * 120.99159 * 0.83128 * 10 9 8 12 12 C 1.36085 * 120.97935 * 359.44732 * 11 10 9 13 13 C 1.40579 * 119.65917 * 0.02562 * 12 11 10 14 14 C 1.36564 * 119.56580 * 174.56432 * 5 4 2 15 15 C 1.50701 * 120.19377 * 359.97438 * 14 5 4 16 16 C 1.52999 * 109.47598 * 89.99374 * 15 14 5 17 17 C 1.50694 * 109.47331 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00312 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00115 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00125 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00232 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46806 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47218 * 120.00419 * 21 19 17 24 24 H 1.48503 * 109.47052 * 240.00390 * 21 19 17 25 25 H 1.09003 * 109.47219 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46916 * 300.00351 * 1 2 3 27 27 H 1.09002 * 109.46931 * 59.99852 * 1 2 3 28 28 H 1.09001 * 109.47335 * 239.99316 * 2 1 3 29 29 H 1.09001 * 109.47432 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46564 * 299.99604 * 3 2 1 31 31 H 1.09001 * 109.47444 * 59.99383 * 3 2 1 32 32 H 1.08002 * 119.53251 * 359.97240 * 6 5 4 33 33 H 1.07994 * 120.13317 * 180.02562 * 7 6 5 34 34 H 1.08007 * 120.16240 * 359.97438 * 9 8 7 35 35 H 1.08003 * 119.50371 * 180.27328 * 10 9 8 36 36 H 1.07996 * 119.50644 * 179.47385 * 11 10 9 37 37 H 1.08001 * 120.16835 * 180.02562 * 12 11 10 38 38 H 1.08997 * 109.47146 * 209.99879 * 15 14 5 39 39 H 1.09007 * 109.46872 * 329.99271 * 15 14 5 40 40 H 1.08997 * 109.47284 * 300.00421 * 16 15 14 41 41 H 1.09008 * 109.46394 * 60.00291 * 16 15 14 42 42 H 0.97001 * 120.00377 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1053 -2.0273 1.1005 6 6 1.6398 -2.6984 -0.0347 7 6 1.7246 -4.0523 -0.1302 8 6 2.2880 -4.7917 0.9246 9 6 2.3916 -6.1915 0.8588 10 6 2.9583 -6.8744 1.8908 11 6 3.4234 -6.2078 3.0230 12 6 3.3346 -4.8536 3.1245 13 6 2.7653 -4.1131 2.0739 14 6 2.6585 -2.7144 2.1430 15 6 3.1563 -1.9756 3.3586 16 6 2.0230 -1.8499 4.3787 17 6 2.5207 -1.1106 5.5939 18 1 3.5430 -0.7646 5.6344 19 6 1.6707 -0.8750 6.6535 20 7 0.4257 -1.2958 6.6040 21 14 2.2874 0.0421 8.1596 22 1 3.7145 0.4050 7.9681 23 1 1.4836 1.2759 8.3514 24 1 2.1544 -0.8264 9.3568 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.2061 -2.1336 -0.8466 33 1 1.3615 -4.5573 -1.0130 34 1 2.0355 -6.7218 -0.0122 35 1 3.0406 -7.9499 1.8355 36 1 3.8612 -6.7743 3.8316 37 1 3.6996 -4.3504 4.0077 38 1 3.9861 -2.5251 3.8031 39 1 3.4941 -0.9813 3.0663 40 1 1.1933 -1.3004 3.9341 41 1 1.6853 -2.8443 4.6709 42 1 -0.1723 -1.1304 7.3497 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060769.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:33 Heat of formation + Delta-G solvation = -16.082232 kcal Electronic energy + Delta-G solvation = -22181.823595 eV Core-core repulsion = 19091.163698 eV Total energy + Delta-G solvation = -3090.659897 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.152 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.51189 -38.78068 -35.64407 -34.40276 -32.90774 -32.33023 -30.27155 -29.45631 -28.10514 -27.20631 -24.96550 -23.27042 -22.82978 -21.65557 -21.00089 -19.62334 -18.04020 -16.87248 -16.60338 -16.16347 -15.38982 -15.04868 -14.42487 -14.25224 -14.05836 -13.87437 -13.47362 -13.08740 -12.96349 -12.72949 -12.37868 -12.33382 -12.21787 -12.12581 -11.94999 -11.54511 -11.25483 -11.05332 -10.96071 -10.81657 -10.68064 -10.60956 -10.24984 -10.18004 -9.72256 -9.61935 -9.06858 -8.93167 -8.26782 -8.06654 -7.11800 -5.91740 -3.93910 0.88810 1.37422 2.42126 3.31522 3.35205 3.42469 3.46918 3.54207 4.45309 4.53162 4.82387 4.87019 5.01330 5.04055 5.15953 5.18411 5.21700 5.43694 5.44757 5.47211 5.57257 5.65387 5.69463 5.75260 5.81316 5.82842 6.09251 6.11825 6.17175 6.23510 6.28175 6.44330 6.51763 6.55470 6.76536 6.77510 6.82869 6.93773 7.13963 7.25943 7.31073 7.79375 7.85189 7.96708 8.10622 8.50686 9.13483 9.69201 11.19299 Molecular weight = 284.15amu Principal moments of inertia in cm(-1) A = 0.010888 B = 0.006423 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.120314 B = 4358.289223 C = 6434.057371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.076 3.924 3 C -0.148 4.148 4 O -0.294 6.294 5 C 0.117 3.883 6 C -0.181 4.181 7 C -0.093 4.093 8 C -0.079 4.079 9 C -0.107 4.107 10 C -0.129 4.129 11 C -0.123 4.123 12 C -0.094 4.094 13 C -0.016 4.016 14 C -0.085 4.085 15 C -0.069 4.069 16 C 0.034 3.966 17 C -0.516 4.516 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.889 3.111 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.137 0.863 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.018 0.982 41 H 0.015 0.985 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.839 -4.380 -16.148 16.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.020 3.980 3 C -0.205 4.205 4 O -0.208 6.208 5 C 0.072 3.928 6 C -0.199 4.199 7 C -0.111 4.111 8 C -0.079 4.079 9 C -0.125 4.125 10 C -0.147 4.147 11 C -0.141 4.141 12 C -0.112 4.112 13 C -0.016 4.016 14 C -0.086 4.086 15 C -0.106 4.106 16 C -0.003 4.003 17 C -0.554 4.554 18 H 0.073 0.927 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.154 0.846 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.037 0.963 41 H 0.033 0.967 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.722 -4.236 -15.892 16.671 hybrid contribution -0.072 0.400 0.642 0.760 sum 2.650 -3.836 -15.250 15.947 Atomic orbital electron populations 1.22400 0.95378 1.03042 1.02987 1.22357 0.94257 0.93746 0.87682 1.21831 1.01987 0.93799 1.02888 1.86288 1.80919 1.16082 1.37544 1.18378 0.97471 0.82824 0.94121 1.21031 1.04826 0.95595 0.98440 1.20679 0.99269 0.93332 0.97807 1.18006 1.01516 0.93612 0.94754 1.20863 0.99948 0.92771 0.98884 1.20737 1.00036 0.99518 0.94370 1.20806 1.00739 0.94613 0.97933 1.21239 0.97818 0.94021 0.98130 1.17751 0.97813 0.92169 0.93838 1.19484 1.00850 0.92005 0.96264 1.20653 1.00024 0.98105 0.91861 1.19022 0.92520 0.96972 0.91752 1.21294 0.97252 1.35790 1.01096 0.92655 1.25007 0.94895 0.95994 0.98500 1.69990 1.04993 1.46825 1.31602 0.86586 0.78956 0.79627 0.83132 1.19735 1.21096 1.21095 0.91937 0.91006 0.91561 0.91554 0.91778 0.91040 0.91104 0.85608 0.85885 0.86280 0.86621 0.86277 0.84569 0.92404 0.91676 0.96335 0.96701 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 9.15 37.16 0.34 -1.91 16 2 C 0.08 1.02 2.84 -26.73 -0.08 0.94 16 3 C -0.15 -1.70 9.56 37.16 0.36 -1.34 16 4 O -0.29 -5.37 8.75 -19.42 -0.17 -5.54 16 5 C 0.12 2.15 6.52 -39.58 -0.26 1.89 16 6 C -0.18 -2.73 8.12 -39.79 -0.32 -3.05 16 7 C -0.09 -1.33 9.76 -39.50 -0.39 -1.72 16 8 C -0.08 -1.28 5.74 -106.81 -0.61 -1.89 16 9 C -0.11 -1.47 9.77 -39.49 -0.39 -1.85 16 10 C -0.13 -1.72 9.95 -39.92 -0.40 -2.11 16 11 C -0.12 -1.82 9.95 -39.93 -0.40 -2.22 16 12 C -0.09 -1.66 9.28 -39.47 -0.37 -2.03 16 13 C -0.02 -0.29 5.74 -106.84 -0.61 -0.90 16 14 C -0.09 -1.71 5.15 -104.39 -0.54 -2.25 16 15 C -0.07 -1.55 4.57 -27.88 -0.13 -1.67 16 16 C 0.03 0.93 4.95 -27.89 -0.14 0.79 16 17 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 18 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -27.59 13.29 55.43 0.74 -26.85 16 21 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 25 H 0.06 0.81 6.85 -51.93 -0.36 0.45 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.77 6.29 -51.93 -0.33 0.44 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.13 1.55 5.32 -52.49 -0.28 1.27 16 33 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 35 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 36 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 37 H 0.14 2.47 6.36 -52.49 -0.33 2.14 16 38 H 0.06 1.22 6.41 -51.93 -0.33 0.89 16 39 H 0.06 1.47 7.48 -51.93 -0.39 1.08 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.01 0.42 8.14 -51.92 -0.42 0.00 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 342.52 15.07 5.16 5.16 Total: -1.00 -32.68 342.52 -9.84 -42.52 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.21 Total: 0.70 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: -4.34 Total: -33.03 kcal Atomic # 7 Polarization: -27.59 SS G_CDS: 0.74 Total: -26.85 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.17 Total: -5.54 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.68 -9.84 -42.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060769.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.436 kcal (2) G-P(sol) polarization free energy of solvation -32.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds