Wall clock time and date at job start Tue Mar 31 2020 06:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47381 * 2 1 4 4 O 1.42901 * 109.47168 * 119.99610 * 2 1 3 5 5 C 1.35897 * 116.99770 * 84.63884 * 4 2 1 6 6 C 1.39846 * 119.56701 * 354.58896 * 5 4 2 7 7 C 1.35987 * 120.93267 * 180.02562 * 6 5 4 8 8 C 1.40587 * 119.73038 * 359.97438 * 7 6 5 9 9 C 1.40523 * 121.22356 * 180.02562 * 8 7 6 10 10 C 1.36107 * 119.67175 * 179.15658 * 9 8 7 11 11 C 1.39379 * 120.99159 * 0.83128 * 10 9 8 12 12 C 1.36085 * 120.97935 * 359.44732 * 11 10 9 13 13 C 1.40579 * 119.65917 * 0.02562 * 12 11 10 14 14 C 1.36564 * 119.56580 * 174.56432 * 5 4 2 15 15 C 1.50701 * 120.19377 * 359.97438 * 14 5 4 16 16 C 1.52999 * 109.47598 * 89.99374 * 15 14 5 17 17 C 1.50694 * 109.47331 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00312 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00115 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00125 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00232 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46806 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47218 * 120.00419 * 21 19 17 24 24 H 1.48503 * 109.47052 * 240.00390 * 21 19 17 25 25 H 1.09003 * 109.47219 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46916 * 300.00351 * 1 2 3 27 27 H 1.09002 * 109.46931 * 59.99852 * 1 2 3 28 28 H 1.09001 * 109.47335 * 239.99316 * 2 1 3 29 29 H 1.09001 * 109.47432 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46564 * 299.99604 * 3 2 1 31 31 H 1.09001 * 109.47444 * 59.99383 * 3 2 1 32 32 H 1.08002 * 119.53251 * 359.97240 * 6 5 4 33 33 H 1.07994 * 120.13317 * 180.02562 * 7 6 5 34 34 H 1.08007 * 120.16240 * 359.97438 * 9 8 7 35 35 H 1.08003 * 119.50371 * 180.27328 * 10 9 8 36 36 H 1.07996 * 119.50644 * 179.47385 * 11 10 9 37 37 H 1.08001 * 120.16835 * 180.02562 * 12 11 10 38 38 H 1.08997 * 109.47146 * 209.99879 * 15 14 5 39 39 H 1.09007 * 109.46872 * 329.99271 * 15 14 5 40 40 H 1.08997 * 109.47284 * 300.00421 * 16 15 14 41 41 H 1.09008 * 109.46394 * 60.00291 * 16 15 14 42 42 H 0.97001 * 120.00377 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1053 -2.0273 1.1005 6 6 1.6398 -2.6984 -0.0347 7 6 1.7246 -4.0523 -0.1302 8 6 2.2880 -4.7917 0.9246 9 6 2.3916 -6.1915 0.8588 10 6 2.9583 -6.8744 1.8908 11 6 3.4234 -6.2078 3.0230 12 6 3.3346 -4.8536 3.1245 13 6 2.7653 -4.1131 2.0739 14 6 2.6585 -2.7144 2.1430 15 6 3.1563 -1.9756 3.3586 16 6 2.0230 -1.8499 4.3787 17 6 2.5207 -1.1106 5.5939 18 1 3.5430 -0.7646 5.6344 19 6 1.6707 -0.8750 6.6535 20 7 0.4257 -1.2958 6.6040 21 14 2.2874 0.0421 8.1596 22 1 3.7145 0.4050 7.9681 23 1 1.4836 1.2759 8.3514 24 1 2.1544 -0.8264 9.3568 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.2061 -2.1336 -0.8466 33 1 1.3615 -4.5573 -1.0130 34 1 2.0355 -6.7218 -0.0122 35 1 3.0406 -7.9499 1.8355 36 1 3.8612 -6.7743 3.8316 37 1 3.6996 -4.3504 4.0077 38 1 3.9861 -2.5251 3.8031 39 1 3.4941 -0.9813 3.0663 40 1 1.1933 -1.3004 3.9341 41 1 1.6853 -2.8443 4.6709 42 1 -0.1723 -1.1304 7.3497 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060769.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:32 Heat of formation + Delta-G solvation = -33.248177 kcal Electronic energy + Delta-G solvation = -22182.567966 eV Core-core repulsion = 19091.163698 eV Total energy + Delta-G solvation = -3091.404269 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.152 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.76182 -39.98451 -36.93428 -36.04502 -34.57416 -33.72665 -31.87373 -30.71461 -29.59615 -28.17866 -26.91038 -24.48837 -24.07564 -23.42531 -22.17909 -21.12294 -19.20968 -18.61013 -18.01461 -17.73727 -16.61472 -16.52392 -16.19017 -15.41814 -15.33554 -15.18857 -14.71707 -14.57350 -14.36262 -14.02571 -13.93659 -13.78444 -13.41423 -13.36761 -13.18887 -13.04503 -12.85533 -12.63561 -12.47398 -12.20679 -12.07920 -11.83163 -11.77186 -11.67252 -11.46732 -11.36990 -11.02957 -10.58677 -10.42939 -9.26224 -8.45016 -8.19272 -6.33026 -0.31963 0.15994 1.18445 1.36572 1.37905 1.51653 2.11230 2.38260 2.39698 3.11306 3.22576 3.70811 3.83218 3.91361 3.98451 4.05634 4.08782 4.16687 4.27688 4.36101 4.45461 4.54439 4.60723 4.66214 4.70232 4.80155 4.82723 4.86909 4.93855 5.04213 5.14657 5.16515 5.22193 5.27299 5.32845 5.36924 5.40803 5.48396 5.64389 5.66858 5.76170 5.84003 5.96461 6.15160 6.22612 6.63309 6.83119 7.35775 8.91531 Molecular weight = 284.15amu Principal moments of inertia in cm(-1) A = 0.010888 B = 0.006423 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.120314 B = 4358.289223 C = 6434.057371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.064 3.936 3 C -0.146 4.146 4 O -0.330 6.330 5 C 0.116 3.884 6 C -0.192 4.192 7 C -0.070 4.070 8 C -0.102 4.102 9 C -0.094 4.094 10 C -0.133 4.133 11 C -0.111 4.111 12 C -0.139 4.139 13 C -0.033 4.033 14 C -0.140 4.140 15 C -0.048 4.048 16 C 0.052 3.948 17 C -0.541 4.541 18 H 0.058 0.942 19 C 0.000 4.000 20 N -0.934 5.934 21 Si 0.968 3.032 22 H -0.261 1.261 23 H -0.276 1.276 24 H -0.275 1.275 25 H 0.055 0.945 26 H 0.044 0.956 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.049 0.951 32 H 0.158 0.842 33 H 0.171 0.829 34 H 0.162 0.838 35 H 0.156 0.844 36 H 0.140 0.860 37 H 0.110 0.890 38 H 0.057 0.943 39 H 0.051 0.949 40 H -0.020 1.020 41 H -0.016 1.016 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.832 -5.737 -18.561 19.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.009 3.991 3 C -0.202 4.202 4 O -0.245 6.245 5 C 0.071 3.929 6 C -0.210 4.210 7 C -0.088 4.088 8 C -0.102 4.102 9 C -0.112 4.112 10 C -0.151 4.151 11 C -0.128 4.128 12 C -0.157 4.157 13 C -0.033 4.033 14 C -0.141 4.141 15 C -0.085 4.085 16 C 0.015 3.985 17 C -0.579 4.579 18 H 0.077 0.923 19 C -0.198 4.198 20 N -0.574 5.574 21 Si 0.791 3.209 22 H -0.185 1.185 23 H -0.202 1.202 24 H -0.200 1.200 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.122 0.878 28 H 0.110 0.890 29 H 0.079 0.921 30 H 0.126 0.874 31 H 0.068 0.932 32 H 0.175 0.825 33 H 0.188 0.812 34 H 0.180 0.820 35 H 0.173 0.827 36 H 0.157 0.843 37 H 0.128 0.872 38 H 0.075 0.925 39 H 0.070 0.930 40 H -0.002 1.002 41 H 0.002 0.998 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.725 -5.589 -18.317 19.343 hybrid contribution -0.112 0.746 1.306 1.508 sum 2.613 -4.843 -17.011 17.879 Atomic orbital electron populations 1.22387 0.94723 1.02785 1.03489 1.22772 0.94877 0.94405 0.87065 1.21878 1.01852 0.92881 1.03638 1.86258 1.81196 1.16533 1.40475 1.18677 0.96454 0.83072 0.94697 1.21299 1.05218 0.96371 0.98077 1.21239 0.96320 0.92975 0.98227 1.18396 1.02126 0.95235 0.94440 1.21354 0.98158 0.91550 1.00115 1.21172 0.99137 1.01466 0.93309 1.21159 0.99033 0.93456 0.99194 1.21179 1.00946 0.95594 0.98023 1.17960 0.98359 0.91677 0.95306 1.19357 1.05063 0.93224 0.96453 1.20220 0.98113 0.97901 0.92294 1.18734 0.92932 0.94190 0.92634 1.21692 0.97639 1.36371 1.02218 0.92332 1.26015 0.94922 0.96719 1.02109 1.70138 1.06435 1.47907 1.32917 0.85367 0.78848 0.78213 0.78436 1.18537 1.20189 1.20006 0.92553 0.93652 0.87823 0.89023 0.92058 0.87380 0.93160 0.82468 0.81171 0.82020 0.82685 0.84258 0.87214 0.92472 0.93016 1.00192 0.99757 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.27 9.15 71.98 0.66 -3.61 16 2 C 0.06 1.69 2.84 30.59 0.09 1.77 16 3 C -0.15 -3.29 9.56 71.98 0.69 -2.60 16 4 O -0.33 -12.70 8.75 -92.39 -0.81 -13.50 16 5 C 0.12 4.43 6.52 22.27 0.15 4.58 16 6 C -0.19 -5.49 8.12 22.14 0.18 -5.31 16 7 C -0.07 -1.79 9.76 22.32 0.22 -1.58 16 8 C -0.10 -3.13 5.74 -21.28 -0.12 -3.25 16 9 C -0.09 -2.23 9.77 22.33 0.22 -2.01 16 10 C -0.13 -3.12 9.95 22.05 0.22 -2.90 16 11 C -0.11 -3.22 9.95 22.04 0.22 -3.00 16 12 C -0.14 -5.23 9.28 22.34 0.21 -5.02 16 13 C -0.03 -1.28 5.74 -21.30 -0.12 -1.40 16 14 C -0.14 -6.06 5.15 -19.72 -0.10 -6.17 16 15 C -0.05 -2.37 4.57 29.85 0.14 -2.23 16 16 C 0.05 3.10 4.95 29.85 0.15 3.24 16 17 C -0.54 -33.34 9.11 25.60 0.23 -33.10 16 18 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 19 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 20 N -0.93 -60.14 13.29 21.45 0.28 -59.85 16 21 Si 0.97 46.52 29.54 68.60 2.03 48.55 16 22 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 24 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 25 H 0.06 1.41 6.85 -2.39 -0.02 1.40 16 26 H 0.04 1.31 8.14 -2.39 -0.02 1.30 16 27 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.09 1.92 6.29 -2.39 -0.02 1.91 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.11 1.61 8.14 -2.39 -0.02 1.60 16 31 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.16 3.38 5.32 -2.91 -0.02 3.36 16 33 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 34 H 0.16 2.44 8.06 -2.91 -0.02 2.41 16 35 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 36 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 37 H 0.11 4.50 6.36 -2.91 -0.02 4.49 16 38 H 0.06 2.71 6.41 -2.39 -0.02 2.69 16 39 H 0.05 2.58 7.48 -2.38 -0.02 2.56 16 40 H -0.02 -1.34 8.14 -2.39 -0.02 -1.36 16 41 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 42 H 0.26 15.77 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -77.86 342.52 5.98 -71.88 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 1.00 Total: 15.06 kcal Atomic # 6 Polarization: -65.60 SS G_CDS: 3.47 Total: -62.13 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: 0.28 Total: -59.85 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.81 Total: -13.50 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -77.86 5.98 -71.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060769.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.632 kcal (2) G-P(sol) polarization free energy of solvation -77.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds