Wall clock time and date at job start Tue Mar 31 2020 06:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.46972 * 2 1 4 4 C 1.35888 * 117.00149 * 180.02562 * 3 2 1 5 5 C 1.39850 * 119.56351 * 359.73164 * 4 3 2 6 6 C 1.35981 * 120.92622 * 180.27133 * 5 4 3 7 7 C 1.40596 * 119.73516 * 0.02562 * 6 5 4 8 8 C 1.40519 * 121.21962 * 180.02562 * 7 6 5 9 9 C 1.36104 * 119.66995 * 179.97438 * 8 7 6 10 10 C 1.39366 * 120.99644 * 359.97438 * 9 8 7 11 11 C 1.36096 * 120.98075 * 0.02562 * 10 9 8 12 12 C 1.40574 * 119.65424 * 359.97438 * 11 10 9 13 13 C 1.36575 * 119.56617 * 180.02562 * 4 3 2 14 14 C 1.50702 * 120.18709 * 359.70618 * 13 4 3 15 15 C 1.52999 * 109.47035 * 90.00151 * 14 13 4 16 16 C 1.53003 * 109.46775 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.46860 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99781 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99604 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00412 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99568 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47249 * 60.00352 * 21 19 17 23 23 H 1.48505 * 109.46980 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47346 * 300.00283 * 21 19 17 25 25 H 1.08997 * 109.47294 * 59.99442 * 1 2 3 26 26 H 1.09005 * 109.46555 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46878 * 299.99547 * 1 2 3 28 28 H 1.08999 * 109.47139 * 240.00904 * 2 1 3 29 29 H 1.08993 * 109.47557 * 120.00109 * 2 1 3 30 30 H 1.07995 * 119.53398 * 0.25145 * 5 4 3 31 31 H 1.08008 * 120.13294 * 179.97438 * 6 5 4 32 32 H 1.07994 * 120.16485 * 0.02562 * 8 7 6 33 33 H 1.08001 * 119.50041 * 179.97438 * 9 8 7 34 34 H 1.08004 * 119.50958 * 180.02562 * 10 9 8 35 35 H 1.08006 * 120.16902 * 180.02562 * 11 10 9 36 36 H 1.09001 * 109.46524 * 210.00073 * 14 13 4 37 37 H 1.08997 * 109.47080 * 329.99799 * 14 13 4 38 38 H 1.08997 * 109.46963 * 299.99219 * 15 14 13 39 39 H 1.08997 * 109.47474 * 59.99889 * 15 14 13 40 40 H 1.09000 * 109.47375 * 300.00114 * 16 15 14 41 41 H 1.09004 * 109.47341 * 60.00008 * 16 15 14 42 42 H 0.96997 * 119.99954 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5254 -0.0005 5 6 4.1970 0.4099 0.0046 6 6 5.5489 0.5561 0.0098 7 6 6.1110 1.8448 0.0104 8 6 7.5037 2.0320 0.0151 9 6 8.0139 3.2938 0.0151 10 6 7.1754 4.4070 0.0100 11 6 5.8219 4.2645 0.0053 12 6 5.2581 2.9768 0.0052 13 6 3.8659 2.7914 0.0000 14 6 2.9427 3.9825 -0.0056 15 6 2.6241 4.3876 1.4350 16 6 1.6873 5.5973 1.4294 17 6 1.3730 5.9958 2.8484 18 1 1.7992 5.4420 3.6718 19 6 0.5423 7.0682 3.0952 20 7 0.0238 7.7429 2.0925 21 14 0.1533 7.5627 4.8541 22 1 1.4120 7.9141 5.5594 23 1 -0.7550 8.7375 4.8486 24 1 -0.5057 6.4299 5.5526 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.7686 -0.5814 0.0049 31 1 6.1884 -0.3143 0.0141 32 1 8.1659 1.1789 0.0179 33 1 9.0847 3.4344 0.0192 34 1 7.6061 5.3974 0.0096 35 1 5.1844 5.1364 0.0009 36 1 3.4258 4.8142 -0.5185 37 1 2.0189 3.7238 -0.5230 38 1 2.1410 3.5559 1.9479 39 1 3.5479 4.6463 1.9525 40 1 2.1707 6.4288 0.9166 41 1 0.7634 5.3390 0.9118 42 1 -0.5604 8.4975 2.2663 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065614.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:39 Heat of formation + Delta-G solvation = -21.429409 kcal Electronic energy + Delta-G solvation = -21715.059617 eV Core-core repulsion = 18624.167849 eV Total energy + Delta-G solvation = -3090.891768 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.152 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.68194 -38.78396 -35.75817 -34.90029 -33.00919 -31.62822 -31.16494 -29.74626 -28.83822 -26.58333 -24.10941 -23.53210 -22.90052 -22.04688 -20.64604 -19.74755 -18.31312 -17.09216 -16.70916 -16.11111 -16.01807 -15.42075 -14.46358 -14.31054 -14.22840 -13.88381 -13.71696 -13.41889 -13.00979 -12.86333 -12.70019 -12.52585 -12.32538 -12.12439 -11.77890 -11.38119 -11.19865 -11.14428 -11.00043 -10.74256 -10.62440 -10.57620 -10.46298 -10.27943 -9.59806 -9.47477 -9.15015 -8.95522 -8.29325 -8.26312 -7.37537 -5.91848 -3.93407 0.66112 1.15831 2.19203 3.09554 3.34324 3.38148 3.41901 3.45081 4.23895 4.52624 4.63785 4.84047 4.89922 4.92306 4.97895 5.07547 5.17818 5.25211 5.27327 5.42684 5.43594 5.49113 5.55958 5.78928 5.79601 5.82506 5.95895 6.07987 6.18354 6.24787 6.26578 6.29308 6.43351 6.56061 6.61496 6.67958 6.87964 7.02033 7.04687 7.10853 7.27454 7.58673 7.78106 7.95277 8.09874 8.53382 9.13620 9.69834 11.19462 Molecular weight = 284.15amu Principal moments of inertia in cm(-1) A = 0.012491 B = 0.004869 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.149282 B = 5749.267509 C = 7484.134630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.304 6.304 4 C 0.120 3.880 5 C -0.182 4.182 6 C -0.085 4.085 7 C -0.080 4.080 8 C -0.104 4.104 9 C -0.128 4.128 10 C -0.117 4.117 11 C -0.101 4.101 12 C -0.014 4.014 13 C -0.094 4.094 14 C -0.074 4.074 15 C -0.099 4.099 16 C 0.022 3.978 17 C -0.517 4.517 18 H 0.053 0.947 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.890 3.110 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.136 0.864 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.045 0.955 40 H 0.014 0.986 41 H 0.016 0.984 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.264 -16.260 -7.048 20.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.217 6.217 4 C 0.075 3.925 5 C -0.200 4.200 6 C -0.103 4.103 7 C -0.080 4.080 8 C -0.122 4.122 9 C -0.146 4.146 10 C -0.135 4.135 11 C -0.119 4.119 12 C -0.014 4.014 13 C -0.095 4.095 14 C -0.111 4.111 15 C -0.136 4.136 16 C -0.015 4.015 17 C -0.555 4.555 18 H 0.071 0.929 19 C -0.144 4.144 20 N -0.536 5.536 21 Si 0.718 3.282 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.153 0.847 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.033 0.967 41 H 0.034 0.966 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.976 -15.973 -7.087 20.636 hybrid contribution -0.143 -0.004 1.024 1.034 sum 10.833 -15.977 -6.063 20.233 Atomic orbital electron populations 1.21769 0.92750 1.02421 1.04080 1.22736 0.96063 0.82524 1.00724 1.86202 1.18657 1.28331 1.88557 1.18404 0.82512 0.93252 0.98309 1.20994 0.94460 0.97934 1.06622 1.20740 0.94384 0.96038 0.99167 1.18017 0.93509 0.92896 1.03605 1.20896 0.93523 0.97383 1.00369 1.20774 0.99612 0.92686 1.01528 1.20854 0.93630 0.98787 1.00201 1.21211 0.95366 0.96589 0.98747 1.17722 0.91709 0.93191 0.98763 1.19284 0.92978 0.93584 1.03638 1.20597 0.97271 0.93170 1.00087 1.21572 0.99841 0.99816 0.92393 1.19100 0.93970 0.91605 0.96778 1.21244 1.28178 1.13446 0.92678 0.92895 1.25007 0.96096 0.96497 0.96815 1.69956 1.32813 1.20393 1.30484 0.86699 0.78213 0.77930 0.85392 1.20300 1.21319 1.20309 0.91443 0.90756 0.91081 0.92555 0.92374 0.85639 0.85635 0.86084 0.86403 0.86048 0.84668 0.91548 0.90867 0.93338 0.93634 0.96735 0.96586 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 37.16 0.38 -1.18 16 2 C 0.05 0.62 5.45 37.16 0.20 0.82 16 3 O -0.30 -4.81 9.08 -19.39 -0.18 -4.99 16 4 C 0.12 1.91 6.61 -39.58 -0.26 1.65 16 5 C -0.18 -2.35 8.93 -39.79 -0.36 -2.71 16 6 C -0.09 -1.05 9.76 -39.50 -0.39 -1.43 16 7 C -0.08 -1.12 5.74 -106.81 -0.61 -1.74 16 8 C -0.10 -1.23 9.77 -39.49 -0.39 -1.61 16 9 C -0.13 -1.47 9.95 -39.93 -0.40 -1.87 16 10 C -0.12 -1.50 9.95 -39.93 -0.40 -1.89 16 11 C -0.10 -1.53 9.28 -39.47 -0.37 -1.90 16 12 C -0.01 -0.22 5.74 -106.85 -0.61 -0.83 16 13 C -0.09 -1.62 5.15 -104.39 -0.54 -2.16 16 14 C -0.07 -1.41 4.62 -27.88 -0.13 -1.54 16 15 C -0.10 -2.20 5.14 -26.73 -0.14 -2.33 16 16 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 17 C -0.52 -15.19 9.11 -34.44 -0.31 -15.51 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.90 -27.57 13.29 55.43 0.74 -26.83 16 21 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.54 7.64 -51.93 -0.40 0.14 16 29 H 0.06 0.59 7.63 -51.93 -0.40 0.20 16 30 H 0.13 1.27 6.21 -52.49 -0.33 0.95 16 31 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 32 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 34 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 35 H 0.14 2.08 6.37 -52.48 -0.33 1.75 16 36 H 0.07 1.20 6.42 -51.93 -0.33 0.87 16 37 H 0.07 1.43 7.49 -51.93 -0.39 1.04 16 38 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 346.17 15.07 5.22 5.22 Total: -1.00 -32.71 346.17 -10.16 -42.87 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -6.37 Total: -1.27 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: -4.54 Total: -32.19 kcal Atomic # 7 Polarization: -27.57 SS G_CDS: 0.74 Total: -26.83 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: -0.18 Total: -4.99 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.71 -10.16 -42.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065614.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.438 kcal (2) G-P(sol) polarization free energy of solvation -32.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds