Wall clock time and date at job start Tue Mar 31 2020 06:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.46972 * 2 1 4 4 C 1.35888 * 117.00149 * 180.02562 * 3 2 1 5 5 C 1.39850 * 119.56351 * 359.73164 * 4 3 2 6 6 C 1.35981 * 120.92622 * 180.27133 * 5 4 3 7 7 C 1.40596 * 119.73516 * 0.02562 * 6 5 4 8 8 C 1.40519 * 121.21962 * 180.02562 * 7 6 5 9 9 C 1.36104 * 119.66995 * 179.97438 * 8 7 6 10 10 C 1.39366 * 120.99644 * 359.97438 * 9 8 7 11 11 C 1.36096 * 120.98075 * 0.02562 * 10 9 8 12 12 C 1.40574 * 119.65424 * 359.97438 * 11 10 9 13 13 C 1.36575 * 119.56617 * 180.02562 * 4 3 2 14 14 C 1.50702 * 120.18709 * 359.70618 * 13 4 3 15 15 C 1.52999 * 109.47035 * 90.00151 * 14 13 4 16 16 C 1.53003 * 109.46775 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.46860 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99781 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99604 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00412 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99568 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47249 * 60.00352 * 21 19 17 23 23 H 1.48505 * 109.46980 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47346 * 300.00283 * 21 19 17 25 25 H 1.08997 * 109.47294 * 59.99442 * 1 2 3 26 26 H 1.09005 * 109.46555 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46878 * 299.99547 * 1 2 3 28 28 H 1.08999 * 109.47139 * 240.00904 * 2 1 3 29 29 H 1.08993 * 109.47557 * 120.00109 * 2 1 3 30 30 H 1.07995 * 119.53398 * 0.25145 * 5 4 3 31 31 H 1.08008 * 120.13294 * 179.97438 * 6 5 4 32 32 H 1.07994 * 120.16485 * 0.02562 * 8 7 6 33 33 H 1.08001 * 119.50041 * 179.97438 * 9 8 7 34 34 H 1.08004 * 119.50958 * 180.02562 * 10 9 8 35 35 H 1.08006 * 120.16902 * 180.02562 * 11 10 9 36 36 H 1.09001 * 109.46524 * 210.00073 * 14 13 4 37 37 H 1.08997 * 109.47080 * 329.99799 * 14 13 4 38 38 H 1.08997 * 109.46963 * 299.99219 * 15 14 13 39 39 H 1.08997 * 109.47474 * 59.99889 * 15 14 13 40 40 H 1.09000 * 109.47375 * 300.00114 * 16 15 14 41 41 H 1.09004 * 109.47341 * 60.00008 * 16 15 14 42 42 H 0.96997 * 119.99954 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5254 -0.0005 5 6 4.1970 0.4099 0.0046 6 6 5.5489 0.5561 0.0098 7 6 6.1110 1.8448 0.0104 8 6 7.5037 2.0320 0.0151 9 6 8.0139 3.2938 0.0151 10 6 7.1754 4.4070 0.0100 11 6 5.8219 4.2645 0.0053 12 6 5.2581 2.9768 0.0052 13 6 3.8659 2.7914 0.0000 14 6 2.9427 3.9825 -0.0056 15 6 2.6241 4.3876 1.4350 16 6 1.6873 5.5973 1.4294 17 6 1.3730 5.9958 2.8484 18 1 1.7992 5.4420 3.6718 19 6 0.5423 7.0682 3.0952 20 7 0.0238 7.7429 2.0925 21 14 0.1533 7.5627 4.8541 22 1 1.4120 7.9141 5.5594 23 1 -0.7550 8.7375 4.8486 24 1 -0.5057 6.4299 5.5526 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.7686 -0.5814 0.0049 31 1 6.1884 -0.3143 0.0141 32 1 8.1659 1.1789 0.0179 33 1 9.0847 3.4344 0.0192 34 1 7.6061 5.3974 0.0096 35 1 5.1844 5.1364 0.0009 36 1 3.4258 4.8142 -0.5185 37 1 2.0189 3.7238 -0.5230 38 1 2.1410 3.5559 1.9479 39 1 3.5479 4.6463 1.9525 40 1 2.1707 6.4288 0.9166 41 1 0.7634 5.3390 0.9118 42 1 -0.5604 8.4975 2.2663 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065614.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:38 Heat of formation + Delta-G solvation = -37.935943 kcal Electronic energy + Delta-G solvation = -21715.775394 eV Core-core repulsion = 18624.167849 eV Total energy + Delta-G solvation = -3091.607546 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.152 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.74661 -39.82338 -37.04129 -36.29940 -34.87817 -32.92036 -32.43318 -30.83928 -30.08951 -28.29524 -25.50748 -24.89416 -23.99828 -23.02236 -22.34028 -21.22981 -19.31835 -18.52371 -18.08584 -17.68742 -17.01393 -16.55823 -16.39511 -15.72409 -15.34928 -15.03649 -14.83139 -14.59074 -14.46508 -14.10376 -13.86668 -13.76975 -13.68571 -13.34732 -13.08798 -13.04143 -12.62708 -12.57313 -12.47214 -12.19496 -12.09566 -11.99788 -11.71335 -11.47273 -11.41253 -11.31054 -11.07268 -10.56668 -10.47243 -9.30332 -8.49517 -8.20050 -6.32470 -0.35867 0.12999 1.14655 1.37249 1.41324 1.49414 2.08019 2.35301 2.40056 3.11415 3.19351 3.64916 3.85179 3.96201 4.02841 4.07353 4.13440 4.22344 4.31667 4.35640 4.39363 4.44412 4.51243 4.52123 4.63494 4.77938 4.87548 4.94042 4.96448 5.00205 5.15118 5.19384 5.21569 5.24046 5.31917 5.34874 5.41630 5.50433 5.64307 5.68105 5.74249 5.83272 5.90367 6.11900 6.24510 6.54506 6.82738 7.36234 8.91204 Molecular weight = 284.15amu Principal moments of inertia in cm(-1) A = 0.012491 B = 0.004869 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.149282 B = 5749.267509 C = 7484.134630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.045 3.955 3 O -0.336 6.336 4 C 0.118 3.882 5 C -0.192 4.192 6 C -0.066 4.066 7 C -0.102 4.102 8 C -0.093 4.093 9 C -0.134 4.134 10 C -0.109 4.109 11 C -0.141 4.141 12 C -0.029 4.029 13 C -0.138 4.138 14 C -0.058 4.058 15 C -0.078 4.078 16 C 0.029 3.971 17 C -0.546 4.546 18 H 0.055 0.945 19 C 0.001 3.999 20 N -0.932 5.932 21 Si 0.966 3.034 22 H -0.266 1.266 23 H -0.278 1.278 24 H -0.267 1.267 25 H 0.057 0.943 26 H 0.107 0.893 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.157 0.843 31 H 0.169 0.831 32 H 0.160 0.840 33 H 0.153 0.847 34 H 0.139 0.861 35 H 0.114 0.886 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.037 0.963 39 H 0.042 0.958 40 H -0.007 1.007 41 H -0.012 1.012 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.583 -18.828 -6.165 24.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.251 6.251 4 C 0.073 3.927 5 C -0.210 4.210 6 C -0.083 4.083 7 C -0.102 4.102 8 C -0.111 4.111 9 C -0.151 4.151 10 C -0.126 4.126 11 C -0.159 4.159 12 C -0.029 4.029 13 C -0.139 4.139 14 C -0.095 4.095 15 C -0.115 4.115 16 C -0.008 4.008 17 C -0.584 4.584 18 H 0.073 0.927 19 C -0.197 4.197 20 N -0.573 5.573 21 Si 0.790 3.210 22 H -0.191 1.191 23 H -0.204 1.204 24 H -0.192 1.192 25 H 0.077 0.923 26 H 0.126 0.874 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.175 0.825 31 H 0.187 0.813 32 H 0.178 0.822 33 H 0.170 0.830 34 H 0.156 0.844 35 H 0.132 0.868 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.011 0.989 41 H 0.007 0.993 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.297 -18.554 -6.210 23.656 hybrid contribution -0.815 0.752 0.690 1.306 sum 12.482 -17.802 -5.520 22.432 Atomic orbital electron populations 1.21820 0.92371 1.04107 1.02614 1.23068 0.96449 0.80911 1.02463 1.86174 1.19120 1.31278 1.88496 1.18691 0.82962 0.93780 0.97300 1.21279 0.94642 0.98189 1.06857 1.21252 0.94567 0.96635 0.95861 1.18385 0.94575 0.92957 1.04253 1.21348 0.92831 0.98846 0.98067 1.21170 1.01149 0.92071 1.00760 1.21175 0.92799 1.00571 0.98104 1.21179 0.96506 0.96043 1.02147 1.17893 0.91489 0.94371 0.99133 1.19125 0.93443 0.93212 1.08125 1.20259 0.97339 0.94668 0.97281 1.21269 0.98156 0.97209 0.94895 1.18982 0.93510 0.92760 0.95585 1.21630 1.28975 1.14229 0.93522 0.92716 1.25989 0.95524 0.96176 1.01970 1.70095 1.33197 1.20820 1.33144 0.85497 0.78458 0.77906 0.79169 1.19125 1.20352 1.19219 0.92340 0.87431 0.93108 0.90234 0.90939 0.82508 0.81336 0.82218 0.82964 0.84358 0.86818 0.91870 0.92463 0.94376 0.93908 0.98898 0.99327 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 10.28 71.98 0.74 -2.31 16 2 C 0.05 0.98 5.45 71.98 0.39 1.38 16 3 O -0.34 -10.98 9.08 -92.29 -0.84 -11.82 16 4 C 0.12 3.78 6.61 22.27 0.15 3.93 16 5 C -0.19 -4.51 8.93 22.14 0.20 -4.31 16 6 C -0.07 -1.38 9.76 22.32 0.22 -1.16 16 7 C -0.10 -2.62 5.74 -21.28 -0.12 -2.75 16 8 C -0.09 -1.85 9.77 22.33 0.22 -1.63 16 9 C -0.13 -2.66 9.95 22.04 0.22 -2.44 16 10 C -0.11 -2.70 9.95 22.04 0.22 -2.48 16 11 C -0.14 -4.47 9.28 22.34 0.21 -4.26 16 12 C -0.03 -0.94 5.74 -21.31 -0.12 -1.06 16 13 C -0.14 -5.01 5.15 -19.71 -0.10 -5.11 16 14 C -0.06 -2.42 4.62 29.85 0.14 -2.29 16 15 C -0.08 -3.73 5.14 30.60 0.16 -3.58 16 16 C 0.03 1.66 4.97 29.85 0.15 1.81 16 17 C -0.55 -33.38 9.11 25.60 0.23 -33.15 16 18 H 0.05 3.24 7.74 -2.91 -0.02 3.22 16 19 C 0.00 0.07 5.46 84.66 0.46 0.53 16 20 N -0.93 -59.13 13.29 21.45 0.28 -58.85 16 21 Si 0.97 46.15 29.54 68.60 2.03 48.17 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 25 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 27 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.08 1.34 7.64 -2.39 -0.02 1.32 16 29 H 0.07 1.34 7.63 -2.39 -0.02 1.33 16 30 H 0.16 2.59 6.21 -2.91 -0.02 2.57 16 31 H 0.17 2.05 8.06 -2.91 -0.02 2.02 16 32 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 33 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 34 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 35 H 0.11 3.92 6.37 -2.91 -0.02 3.90 16 36 H 0.06 2.57 6.42 -2.39 -0.02 2.56 16 37 H 0.06 2.48 7.49 -2.39 -0.02 2.46 16 38 H 0.04 1.86 8.14 -2.39 -0.02 1.85 16 39 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 40 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 41 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 42 H 0.26 15.67 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -75.03 346.17 5.82 -69.21 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.99 Total: 12.16 kcal Atomic # 6 Polarization: -62.23 SS G_CDS: 3.35 Total: -58.88 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: 0.28 Total: -58.85 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -0.84 Total: -11.82 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.17 kcal Total: -75.03 5.82 -69.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065614.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.275 kcal (2) G-P(sol) polarization free energy of solvation -75.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds