Wall clock time and date at job start Tue Mar 31 2020 05:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47062 * 2 1 4 4 C 1.53007 * 109.46621 * 240.00089 * 2 1 3 5 5 O 1.45201 * 109.47334 * 120.00325 * 2 1 3 6 6 C 1.34588 * 116.99890 * 59.99708 * 5 2 1 7 7 O 1.21460 * 120.00307 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00008 * 180.02562 * 6 5 2 9 9 C 1.45756 * 117.94965 * 179.97438 * 8 6 5 10 10 C 1.52921 * 110.48786 * 160.94609 * 9 8 6 11 11 C 1.53345 * 108.67491 * 50.75268 * 10 9 8 12 12 H 1.08994 * 109.70435 * 52.22108 * 11 10 9 13 13 N 1.46498 * 109.67225 * 172.73552 * 11 10 9 14 14 C 1.36933 * 120.00148 * 203.96645 * 13 11 10 15 15 H 1.08003 * 120.00038 * 359.97438 * 14 13 11 16 16 C 1.38814 * 120.00344 * 180.02562 * 14 13 11 17 17 N 1.31611 * 120.00181 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99654 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47235 * 90.00302 * 18 16 14 20 20 H 1.48501 * 109.47220 * 210.00143 * 18 16 14 21 21 H 1.48501 * 109.47582 * 330.00308 * 18 16 14 22 22 C 1.53066 * 108.42615 * 292.46881 * 11 10 9 23 23 C 1.33359 * 117.94611 * 359.97438 * 8 6 5 24 24 O 1.21230 * 118.24186 * 2.48802 * 23 8 6 25 25 H 1.09004 * 109.46910 * 299.99897 * 1 2 3 26 26 H 1.09003 * 109.47665 * 59.99860 * 1 2 3 27 27 H 1.09002 * 109.47269 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47319 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47535 * 300.00011 * 3 2 1 30 30 H 1.08996 * 109.47348 * 60.00531 * 3 2 1 31 31 H 1.08995 * 109.47086 * 299.99450 * 4 2 1 32 32 H 1.08994 * 109.47232 * 60.00485 * 4 2 1 33 33 H 1.09004 * 109.46534 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.29445 * 40.63167 * 9 8 6 35 35 H 1.09003 * 109.13000 * 281.15211 * 9 8 6 36 36 H 1.08997 * 109.59835 * 290.99731 * 10 9 8 37 37 H 1.09000 * 109.60176 * 170.51296 * 10 9 8 38 38 H 0.96999 * 120.00031 * 23.97134 * 13 11 10 39 39 H 0.96999 * 120.00458 * 179.97438 * 17 16 14 40 40 H 1.08996 * 109.40478 * 288.77469 * 22 11 10 41 41 H 1.09000 * 109.40349 * 169.02678 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6524 -1.9719 1.3382 7 8 0.9520 -2.5090 0.5038 8 7 2.0674 -2.6651 2.4169 9 6 1.6488 -4.0560 2.5377 10 6 2.5552 -4.8047 3.5156 11 6 2.6473 -3.9974 4.8161 12 1 1.6451 -3.7647 5.1759 13 7 3.3668 -4.7740 5.8287 14 6 3.1658 -4.5176 7.1587 15 1 2.4771 -3.7426 7.4613 16 6 3.8479 -5.2531 8.1183 17 7 3.6543 -5.0070 9.3966 18 14 5.0397 -6.5930 7.5951 19 1 6.3970 -6.0127 7.4330 20 1 5.0762 -7.6555 8.6319 21 1 4.5934 -7.1762 6.3043 22 6 3.4054 -2.6995 4.5272 23 6 2.8352 -2.0353 3.3070 24 8 3.0816 -0.8625 3.1241 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6766 -0.2074 -2.1393 33 1 3.1299 -0.7217 -1.2491 34 1 1.7013 -4.5341 1.5595 35 1 0.6215 -4.0897 2.9005 36 1 3.5492 -4.9144 3.0821 37 1 2.1343 -5.7882 3.7246 38 1 3.9857 -5.4698 5.5571 39 1 4.1307 -5.5211 10.0671 40 1 4.4582 -2.9251 4.3576 41 1 3.3132 -2.0285 5.3813 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254227353.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:37 Heat of formation + Delta-G solvation = -95.912340 kcal Electronic energy + Delta-G solvation = -23548.069511 eV Core-core repulsion = 20043.098657 eV Total energy + Delta-G solvation = -3504.970854 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.81664 -39.74365 -37.48744 -36.67621 -34.89814 -34.05465 -32.40440 -30.33539 -29.46061 -27.54837 -27.53248 -25.32232 -23.54439 -23.03396 -21.31460 -20.37305 -18.93467 -18.01879 -17.49106 -16.99010 -16.78822 -15.78752 -15.32846 -15.09303 -14.71470 -14.36885 -14.25965 -14.02010 -13.73309 -13.66414 -13.23872 -12.73491 -12.62069 -12.33891 -12.32481 -12.07554 -12.02771 -11.78637 -11.60790 -11.57625 -11.24478 -11.15517 -10.86887 -10.61454 -10.45826 -10.31202 -10.16756 -9.82937 -9.67602 -9.58273 -9.07005 -7.46374 -5.88110 -3.27186 1.90950 1.97422 3.05358 3.29260 3.32066 3.38935 3.57481 4.48285 4.56338 4.56907 4.62177 4.70295 4.76749 4.86493 5.10056 5.26909 5.33106 5.36821 5.39055 5.50021 5.55291 5.56598 5.62278 5.67349 5.68212 5.77202 5.85219 5.91802 6.00976 6.06905 6.09643 6.16910 6.35147 6.51916 6.57067 6.82830 7.84395 7.89531 8.08831 8.29541 9.05895 9.77695 9.95164 11.29429 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.037700 B = 0.003780 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.532925 B = 7404.907219 C = 7688.005906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.120 3.880 3 C -0.137 4.137 4 C -0.182 4.182 5 O -0.312 6.312 6 C 0.647 3.353 7 O -0.546 6.546 8 N -0.543 5.543 9 C 0.119 3.881 10 C -0.146 4.146 11 C 0.180 3.820 12 H 0.069 0.931 13 N -0.741 5.741 14 C -0.255 4.255 15 H 0.093 0.907 16 C 0.010 3.990 17 N -0.928 5.928 18 Si 0.884 3.116 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.276 1.276 22 C -0.151 4.151 23 C 0.516 3.484 24 O -0.490 6.490 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.364 0.636 39 H 0.261 0.739 40 H 0.105 0.895 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.047 6.309 -20.124 21.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.083 3.917 3 C -0.194 4.194 4 C -0.239 4.239 5 O -0.225 6.225 6 C 0.404 3.596 7 O -0.435 6.435 8 N -0.293 5.293 9 C -0.002 4.002 10 C -0.184 4.184 11 C 0.069 3.931 12 H 0.087 0.913 13 N -0.383 5.383 14 C -0.385 4.385 15 H 0.110 0.890 16 C -0.186 4.186 17 N -0.575 5.575 18 Si 0.714 3.286 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.202 1.202 22 C -0.193 4.193 23 C 0.306 3.694 24 O -0.362 6.362 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.198 0.802 39 H 0.072 0.928 40 H 0.123 0.877 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.188 6.953 -20.228 21.796 hybrid contribution 0.872 -1.032 -0.266 1.377 sum -3.316 5.921 -20.494 21.588 Atomic orbital electron populations 1.22501 0.94069 1.04799 1.02574 1.22221 0.94422 0.92262 0.82827 1.21794 1.02391 0.92341 1.02864 1.22503 1.01651 1.03194 0.96573 1.86896 1.69258 1.21798 1.44536 1.18623 0.77989 0.81423 0.81542 1.90880 1.39458 1.70693 1.42434 1.45960 1.48596 1.14277 1.20486 1.21623 0.99576 0.77154 1.01863 1.22305 1.00193 1.00398 0.95550 1.20286 0.95854 0.88959 0.88022 0.91348 1.42717 1.51403 1.41348 1.02846 1.19057 1.22283 1.16941 0.80191 0.88956 1.24690 0.99684 0.99246 0.95016 1.69693 1.45455 1.43200 0.99116 0.86569 0.81849 0.82533 0.77629 1.20960 1.21642 1.20191 1.22648 1.02322 1.00914 0.93426 1.21337 0.76576 0.87204 0.84290 1.90795 1.55287 1.15906 1.74168 0.92023 0.91171 0.89655 0.91421 0.90438 0.91321 0.89671 0.91153 0.92138 0.88915 0.89905 0.90845 0.88352 0.80244 0.92846 0.87724 0.87125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 8.37 37.16 0.31 -1.67 16 2 C 0.12 1.43 1.13 -90.62 -0.10 1.32 16 3 C -0.14 -1.33 8.85 37.15 0.33 -1.00 16 4 C -0.18 -1.94 8.37 37.16 0.31 -1.63 16 5 O -0.31 -4.83 7.09 -48.37 -0.34 -5.17 16 6 C 0.65 9.92 7.53 54.05 0.41 10.33 16 7 O -0.55 -8.34 11.43 -19.24 -0.22 -8.56 16 8 N -0.54 -7.90 2.92 -121.99 -0.36 -8.26 16 9 C 0.12 1.41 5.91 -4.48 -0.03 1.38 16 10 C -0.15 -1.84 5.50 -26.59 -0.15 -1.98 16 11 C 0.18 2.96 2.85 -67.72 -0.19 2.77 16 12 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 13 N -0.74 -15.53 4.95 -53.22 -0.26 -15.80 16 14 C -0.26 -6.65 10.42 -15.06 -0.16 -6.80 16 15 H 0.09 2.59 8.06 -52.48 -0.42 2.17 16 16 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 17 N -0.93 -27.92 13.97 55.49 0.78 -27.15 16 18 Si 0.88 20.72 27.73 -169.99 -4.71 16.01 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.28 -5.95 6.52 56.52 0.37 -5.58 16 22 C -0.15 -2.42 5.62 -28.10 -0.16 -2.58 16 23 C 0.52 8.33 7.41 -11.87 -0.09 8.24 16 24 O -0.49 -9.19 14.78 -19.03 -0.28 -9.47 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 1.07 5.88 -51.93 -0.31 0.77 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.05 5.88 -51.93 -0.31 0.75 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 1.00 7.60 -51.93 -0.39 0.61 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 37 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.36 7.44 5.66 -40.82 -0.23 7.21 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.10 1.64 8.14 -51.93 -0.42 1.21 16 41 H 0.11 1.94 8.14 -51.93 -0.42 1.51 16 LS Contribution 328.23 15.07 4.95 4.95 Total: -1.00 -31.62 328.23 -6.38 -38.01 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -6.32 Total: 6.88 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: 0.39 Total: 8.56 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: 0.16 Total: -51.20 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.84 Total: -23.20 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.71 Total: 16.01 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.62 -6.38 -38.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254227353.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.907 kcal (2) G-P(sol) polarization free energy of solvation -31.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds