Wall clock time and date at job start Tue Mar 31 2020 05:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47062 * 2 1 4 4 C 1.53007 * 109.46621 * 240.00089 * 2 1 3 5 5 O 1.45201 * 109.47334 * 120.00325 * 2 1 3 6 6 C 1.34588 * 116.99890 * 59.99708 * 5 2 1 7 7 O 1.21460 * 120.00307 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00008 * 180.02562 * 6 5 2 9 9 C 1.45756 * 117.94965 * 179.97438 * 8 6 5 10 10 C 1.52921 * 110.48786 * 160.94609 * 9 8 6 11 11 C 1.53345 * 108.67491 * 50.75268 * 10 9 8 12 12 H 1.08994 * 109.70435 * 52.22108 * 11 10 9 13 13 N 1.46498 * 109.67225 * 172.73552 * 11 10 9 14 14 C 1.36933 * 120.00148 * 203.96645 * 13 11 10 15 15 H 1.08003 * 120.00038 * 359.97438 * 14 13 11 16 16 C 1.38814 * 120.00344 * 180.02562 * 14 13 11 17 17 N 1.31611 * 120.00181 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99654 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47235 * 90.00302 * 18 16 14 20 20 H 1.48501 * 109.47220 * 210.00143 * 18 16 14 21 21 H 1.48501 * 109.47582 * 330.00308 * 18 16 14 22 22 C 1.53066 * 108.42615 * 292.46881 * 11 10 9 23 23 C 1.33359 * 117.94611 * 359.97438 * 8 6 5 24 24 O 1.21230 * 118.24186 * 2.48802 * 23 8 6 25 25 H 1.09004 * 109.46910 * 299.99897 * 1 2 3 26 26 H 1.09003 * 109.47665 * 59.99860 * 1 2 3 27 27 H 1.09002 * 109.47269 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47319 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47535 * 300.00011 * 3 2 1 30 30 H 1.08996 * 109.47348 * 60.00531 * 3 2 1 31 31 H 1.08995 * 109.47086 * 299.99450 * 4 2 1 32 32 H 1.08994 * 109.47232 * 60.00485 * 4 2 1 33 33 H 1.09004 * 109.46534 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.29445 * 40.63167 * 9 8 6 35 35 H 1.09003 * 109.13000 * 281.15211 * 9 8 6 36 36 H 1.08997 * 109.59835 * 290.99731 * 10 9 8 37 37 H 1.09000 * 109.60176 * 170.51296 * 10 9 8 38 38 H 0.96999 * 120.00031 * 23.97134 * 13 11 10 39 39 H 0.96999 * 120.00458 * 179.97438 * 17 16 14 40 40 H 1.08996 * 109.40478 * 288.77469 * 22 11 10 41 41 H 1.09000 * 109.40349 * 169.02678 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6524 -1.9719 1.3382 7 8 0.9520 -2.5090 0.5038 8 7 2.0674 -2.6651 2.4169 9 6 1.6488 -4.0560 2.5377 10 6 2.5552 -4.8047 3.5156 11 6 2.6473 -3.9974 4.8161 12 1 1.6451 -3.7647 5.1759 13 7 3.3668 -4.7740 5.8287 14 6 3.1658 -4.5176 7.1587 15 1 2.4771 -3.7426 7.4613 16 6 3.8479 -5.2531 8.1183 17 7 3.6543 -5.0070 9.3966 18 14 5.0397 -6.5930 7.5951 19 1 6.3970 -6.0127 7.4330 20 1 5.0762 -7.6555 8.6319 21 1 4.5934 -7.1762 6.3043 22 6 3.4054 -2.6995 4.5272 23 6 2.8352 -2.0353 3.3070 24 8 3.0816 -0.8625 3.1241 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6766 -0.2074 -2.1393 33 1 3.1299 -0.7217 -1.2491 34 1 1.7013 -4.5341 1.5595 35 1 0.6215 -4.0897 2.9005 36 1 3.5492 -4.9144 3.0821 37 1 2.1343 -5.7882 3.7246 38 1 3.9857 -5.4698 5.5571 39 1 4.1307 -5.5211 10.0671 40 1 4.4582 -2.9251 4.3576 41 1 3.3132 -2.0285 5.3813 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254227353.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:36 Heat of formation + Delta-G solvation = -116.118354 kcal Electronic energy + Delta-G solvation = -23548.945710 eV Core-core repulsion = 20043.098657 eV Total energy + Delta-G solvation = -3505.847052 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.99645 -40.90333 -38.68099 -38.00726 -36.27392 -35.11669 -34.13066 -31.97612 -30.76690 -28.38259 -28.32741 -26.81513 -24.75921 -24.53045 -22.71095 -21.50781 -20.17677 -19.56964 -18.89678 -18.11180 -17.99877 -16.92753 -16.80187 -16.17720 -16.12891 -15.73986 -15.43752 -15.37502 -14.94801 -14.74020 -14.55906 -14.37305 -13.88672 -13.37745 -13.20111 -13.08957 -12.97415 -12.89987 -12.87876 -12.73156 -12.55683 -12.53446 -12.20019 -12.15831 -11.80468 -11.65539 -11.42510 -11.36616 -11.17637 -10.90293 -10.72598 -9.36878 -7.99009 -5.35287 0.65786 0.90176 1.43842 1.47706 1.54917 1.84121 2.46728 2.52920 3.23303 3.32003 3.57682 3.70121 3.77347 3.77870 3.92964 3.97933 4.10217 4.31071 4.38388 4.44473 4.58834 4.60052 4.72214 4.74103 4.80016 4.81498 4.84626 4.88820 4.92649 5.11119 5.15519 5.24751 5.25662 5.26400 5.49094 5.63046 5.79916 6.23515 6.63039 6.94282 7.10169 7.82106 8.02944 9.22017 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.037700 B = 0.003780 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.532925 B = 7404.907219 C = 7688.005906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.104 3.896 3 C -0.133 4.133 4 C -0.175 4.175 5 O -0.334 6.334 6 C 0.642 3.358 7 O -0.546 6.546 8 N -0.541 5.541 9 C 0.118 3.882 10 C -0.132 4.132 11 C 0.175 3.825 12 H 0.059 0.941 13 N -0.741 5.741 14 C -0.234 4.234 15 H 0.058 0.942 16 C -0.062 4.062 17 N -0.984 5.984 18 Si 0.954 3.046 19 H -0.281 1.281 20 H -0.302 1.302 21 H -0.239 1.239 22 C -0.141 4.141 23 C 0.525 3.475 24 O -0.520 6.520 25 H 0.054 0.946 26 H 0.098 0.902 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.109 0.891 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.372 0.628 39 H 0.257 0.743 40 H 0.114 0.886 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.892 5.506 -23.201 24.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.068 3.932 3 C -0.190 4.190 4 C -0.233 4.233 5 O -0.247 6.247 6 C 0.400 3.600 7 O -0.435 6.435 8 N -0.291 5.291 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.066 3.934 12 H 0.077 0.923 13 N -0.384 5.384 14 C -0.365 4.365 15 H 0.076 0.924 16 C -0.254 4.254 17 N -0.634 5.634 18 Si 0.781 3.219 19 H -0.208 1.208 20 H -0.229 1.229 21 H -0.163 1.163 22 C -0.183 4.183 23 C 0.315 3.685 24 O -0.393 6.393 25 H 0.073 0.927 26 H 0.116 0.884 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.127 0.873 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.076 0.924 34 H 0.131 0.869 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.134 0.866 38 H 0.206 0.794 39 H 0.066 0.934 40 H 0.132 0.868 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.062 6.145 -23.392 24.525 hybrid contribution 0.720 -0.653 0.628 1.157 sum -3.342 5.492 -22.764 23.654 Atomic orbital electron populations 1.22455 0.93391 1.03879 1.03664 1.22664 0.95155 0.93135 0.82234 1.21836 1.02052 0.91134 1.03994 1.22448 1.01438 1.02309 0.97061 1.86886 1.69634 1.21866 1.46301 1.18713 0.78060 0.81625 0.81606 1.90880 1.39452 1.70798 1.42399 1.45974 1.47987 1.15157 1.19966 1.21816 0.99840 0.75715 1.02753 1.22202 1.01528 1.00303 0.92992 1.20466 0.94667 0.89238 0.89022 0.92335 1.42633 1.52051 1.42058 1.01627 1.19000 1.20064 1.14851 0.82576 0.92428 1.25530 1.02430 1.02530 0.94888 1.69889 1.47631 1.45216 1.00686 0.85433 0.79124 0.78965 0.78378 1.20775 1.22939 1.16311 1.22446 1.02847 1.00152 0.92891 1.21151 0.76402 0.86705 0.84218 1.90786 1.56556 1.17108 1.74895 0.92658 0.88363 0.91463 0.91976 0.87265 0.92194 0.91413 0.88416 0.92396 0.86940 0.88901 0.89290 0.86644 0.79401 0.93404 0.86818 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.55 8.37 71.98 0.60 -2.95 16 2 C 0.10 2.32 1.13 -10.79 -0.01 2.31 16 3 C -0.13 -2.35 8.85 71.98 0.64 -1.71 16 4 C -0.18 -3.38 8.37 71.98 0.60 -2.78 16 5 O -0.33 -10.10 7.09 -47.14 -0.33 -10.43 16 6 C 0.64 18.93 7.53 129.79 0.98 19.91 16 7 O -0.55 -15.83 11.43 19.97 0.23 -15.60 16 8 N -0.54 -14.92 2.92 -889.51 -2.60 -17.52 16 9 C 0.12 2.48 5.91 86.49 0.51 2.99 16 10 C -0.13 -2.89 5.50 30.68 0.17 -2.72 16 11 C 0.18 5.53 2.85 45.13 0.13 5.65 16 12 H 0.06 1.98 8.08 -2.39 -0.02 1.96 16 13 N -0.74 -29.89 4.95 -322.30 -1.59 -31.49 16 14 C -0.23 -12.29 10.42 84.03 0.88 -11.42 16 15 H 0.06 3.37 8.06 -2.91 -0.02 3.35 16 16 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 17 N -0.98 -61.06 13.97 21.65 0.30 -60.76 16 18 Si 0.95 42.26 27.73 68.60 1.90 44.16 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 21 H -0.24 -9.04 6.52 99.48 0.65 -8.40 16 22 C -0.14 -4.46 5.62 29.71 0.17 -4.30 16 23 C 0.52 16.59 7.41 87.71 0.65 17.24 16 24 O -0.52 -19.52 14.78 20.67 0.31 -19.22 16 25 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 26 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.07 1.61 5.88 -2.39 -0.01 1.59 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.56 5.88 -2.39 -0.01 1.54 16 32 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.11 2.02 7.60 -2.39 -0.02 2.00 16 35 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.09 1.74 8.12 -2.39 -0.02 1.72 16 37 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.37 14.01 5.66 -92.71 -0.52 13.48 16 39 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 40 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 41 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -70.21 328.23 4.44 -65.77 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.44 Total: 25.84 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: 5.78 Total: 19.24 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -3.89 Total: -109.76 kcal Atomic # 8 Polarization: -45.45 SS G_CDS: 0.20 Total: -45.25 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.90 Total: 44.16 kcal Total: -70.21 4.44 -65.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254227353.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.345 kcal (2) G-P(sol) polarization free energy of solvation -70.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds