Wall clock time and date at job start Tue Mar 31 2020 05:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47060 * 2 1 4 4 C 1.53001 * 109.47148 * 240.00160 * 2 1 3 5 5 O 1.45194 * 109.47262 * 120.00114 * 2 1 3 6 6 C 1.34594 * 117.00197 * 60.00276 * 5 2 1 7 7 O 1.21452 * 119.99830 * 359.97438 * 6 5 2 8 8 N 1.34775 * 119.99907 * 180.02562 * 6 5 2 9 9 C 1.45752 * 117.94252 * 179.97438 * 8 6 5 10 10 C 1.52922 * 110.48578 * 199.07201 * 9 8 6 11 11 C 1.53342 * 108.67565 * 309.24866 * 10 9 8 12 12 H 1.08999 * 109.67677 * 307.79803 * 11 10 9 13 13 N 1.46505 * 109.70365 * 187.28243 * 11 10 9 14 14 C 1.36936 * 120.00042 * 156.01539 * 13 11 10 15 15 H 1.07993 * 119.99932 * 0.02562 * 14 13 11 16 16 C 1.38817 * 119.99750 * 179.97438 * 14 13 11 17 17 N 1.31619 * 119.99825 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99977 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47177 * 89.99871 * 18 16 14 20 20 H 1.48501 * 109.46812 * 209.99622 * 18 16 14 21 21 H 1.48495 * 109.47205 * 329.99432 * 18 16 14 22 22 C 1.53069 * 108.42527 * 67.53226 * 11 10 9 23 23 C 1.33182 * 117.99632 * 0.02562 * 8 6 5 24 24 O 1.21233 * 118.11665 * 357.78963 * 23 8 6 25 25 H 1.09001 * 109.47052 * 299.99403 * 1 2 3 26 26 H 1.08992 * 109.47090 * 60.00155 * 1 2 3 27 27 H 1.09005 * 109.46788 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46854 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.46869 * 300.00137 * 3 2 1 30 30 H 1.09001 * 109.46701 * 60.00381 * 3 2 1 31 31 H 1.08998 * 109.47174 * 299.99919 * 4 2 1 32 32 H 1.09004 * 109.47254 * 59.99573 * 4 2 1 33 33 H 1.09000 * 109.47633 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.30135 * 78.76743 * 9 8 6 35 35 H 1.09003 * 109.30184 * 319.38472 * 9 8 6 36 36 H 1.09000 * 109.60631 * 189.48998 * 10 9 8 37 37 H 1.09000 * 109.60237 * 69.00568 * 10 9 8 38 38 H 0.97003 * 119.99343 * 336.01241 * 13 11 10 39 39 H 0.96999 * 119.99896 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.40300 * 71.22794 * 22 11 10 41 41 H 1.09003 * 109.40410 * 191.05547 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6525 -1.9719 1.3382 7 8 0.9514 -2.5088 0.5043 8 7 2.0675 -2.6650 2.4170 9 6 1.6490 -4.0559 2.5377 10 6 1.7913 -4.5341 3.9832 11 6 3.2028 -4.1939 4.4763 12 1 3.9403 -4.5770 3.7709 13 7 3.4234 -4.7936 5.7946 14 6 4.6972 -5.0591 6.2216 15 1 5.5391 -4.8260 5.5867 16 6 4.9062 -5.6268 7.4710 17 7 6.1304 -5.8824 7.8812 18 14 3.4498 -6.0294 8.5695 19 1 2.9886 -7.4135 8.2926 20 1 3.8582 -5.9191 9.9930 21 1 2.3451 -5.0755 8.2961 22 6 3.3268 -2.6715 4.5754 23 6 2.8334 -2.0366 3.3071 24 8 3.1497 -0.8886 3.0793 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6766 -0.2074 -2.1393 33 1 3.1300 -0.7209 -1.2496 34 1 2.2691 -4.6761 1.8904 35 1 0.6076 -4.1469 2.2289 36 1 1.6381 -5.6124 4.0285 37 1 1.0541 -4.0311 4.6090 38 1 2.6672 -5.0026 6.3650 39 1 6.2764 -6.2795 8.7541 40 1 2.7307 -2.3135 5.4148 41 1 4.3714 -2.4027 4.7326 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254227355.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:40 Heat of formation + Delta-G solvation = -95.630134 kcal Electronic energy + Delta-G solvation = -23549.511234 eV Core-core repulsion = 20044.552617 eV Total energy + Delta-G solvation = -3504.958616 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.82948 -39.74945 -37.48667 -36.67665 -34.89921 -34.05375 -32.40583 -30.33651 -29.45921 -27.54845 -27.53224 -25.32422 -23.55342 -23.03518 -21.31395 -20.37384 -18.93562 -18.02168 -17.49046 -16.99302 -16.79196 -15.78884 -15.32742 -15.09470 -14.71280 -14.36789 -14.26225 -14.01843 -13.73137 -13.66288 -13.24085 -12.72515 -12.62114 -12.34239 -12.32362 -12.07621 -12.02748 -11.78933 -11.60825 -11.57620 -11.23731 -11.15718 -10.87608 -10.61909 -10.45837 -10.31342 -10.17552 -9.82060 -9.66805 -9.58410 -9.07325 -7.46290 -5.88138 -3.27185 1.90927 1.97463 3.05636 3.29559 3.31818 3.38949 3.57716 4.48266 4.56330 4.56711 4.62214 4.70201 4.76744 4.86265 5.09925 5.26689 5.32990 5.36819 5.38918 5.51144 5.55318 5.56351 5.62285 5.67190 5.68165 5.77026 5.85245 5.91800 6.00931 6.06433 6.09629 6.16863 6.35152 6.51947 6.56977 6.83111 7.84397 7.89587 8.08917 8.29565 9.05873 9.77673 9.95150 11.29405 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.037713 B = 0.003780 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.275485 B = 7405.391472 C = 7687.791766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.120 3.880 3 C -0.137 4.137 4 C -0.182 4.182 5 O -0.312 6.312 6 C 0.647 3.353 7 O -0.546 6.546 8 N -0.543 5.543 9 C 0.118 3.882 10 C -0.146 4.146 11 C 0.179 3.821 12 H 0.069 0.931 13 N -0.741 5.741 14 C -0.255 4.255 15 H 0.093 0.907 16 C 0.010 3.990 17 N -0.928 5.928 18 Si 0.885 3.115 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.276 1.276 22 C -0.150 4.150 23 C 0.515 3.485 24 O -0.491 6.491 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.364 0.636 39 H 0.261 0.739 40 H 0.105 0.895 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.095 9.144 -15.202 21.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.082 3.918 3 C -0.194 4.194 4 C -0.239 4.239 5 O -0.225 6.225 6 C 0.404 3.596 7 O -0.434 6.434 8 N -0.292 5.292 9 C -0.003 4.003 10 C -0.185 4.185 11 C 0.069 3.931 12 H 0.087 0.913 13 N -0.383 5.383 14 C -0.385 4.385 15 H 0.110 0.890 16 C -0.186 4.186 17 N -0.575 5.575 18 Si 0.714 3.286 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.202 1.202 22 C -0.193 4.193 23 C 0.306 3.694 24 O -0.362 6.362 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.198 0.802 39 H 0.072 0.928 40 H 0.123 0.877 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.833 9.648 -15.554 21.795 hybrid contribution -0.992 -0.355 0.883 1.375 sum -12.825 9.293 -14.670 21.588 Atomic orbital electron populations 1.22503 0.94148 1.04755 1.02515 1.22224 0.94325 0.92289 0.82916 1.21797 1.02498 0.92308 1.02786 1.22501 1.01776 1.03173 0.96491 1.86901 1.69201 1.21812 1.44542 1.18621 0.77927 0.81385 0.81622 1.90878 1.39568 1.70808 1.42187 1.45910 1.48590 1.14330 1.20404 1.21612 1.02191 0.77554 0.98916 1.22305 0.99357 1.03239 0.93558 1.20294 0.94044 0.89474 0.89335 0.91317 1.42725 1.05872 1.74479 1.15235 1.19057 0.83700 1.35088 1.00609 0.88953 1.24694 0.95984 1.00573 0.97394 1.69698 1.18712 1.48401 1.20658 0.86565 0.82764 0.78395 0.80828 1.20932 1.21653 1.20234 1.22652 1.04465 0.99923 0.92240 1.21305 0.76180 0.86583 0.85382 1.90796 1.53051 1.17426 1.74964 0.92138 0.91153 0.89672 0.91325 0.90433 0.91421 0.89655 0.91172 0.92026 0.89883 0.88930 0.88325 0.90847 0.80248 0.92848 0.87732 0.87134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 8.37 37.16 0.31 -1.63 16 2 C 0.12 1.42 1.13 -90.62 -0.10 1.32 16 3 C -0.14 -1.33 8.85 37.16 0.33 -1.00 16 4 C -0.18 -1.98 8.37 37.16 0.31 -1.67 16 5 O -0.31 -4.83 7.08 -48.39 -0.34 -5.17 16 6 C 0.65 9.93 7.53 54.05 0.41 10.33 16 7 O -0.55 -8.33 11.43 -19.23 -0.22 -8.55 16 8 N -0.54 -7.90 2.91 -122.04 -0.36 -8.25 16 9 C 0.12 1.40 5.91 -4.49 -0.03 1.38 16 10 C -0.15 -1.83 5.50 -26.59 -0.15 -1.98 16 11 C 0.18 2.95 2.84 -67.72 -0.19 2.76 16 12 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 13 N -0.74 -15.53 4.95 -53.22 -0.26 -15.80 16 14 C -0.26 -6.64 10.42 -15.06 -0.16 -6.80 16 15 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 16 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 17 N -0.93 -27.92 13.97 55.49 0.78 -27.15 16 18 Si 0.88 20.73 27.74 -169.99 -4.71 16.02 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.00 6.52 56.52 0.37 -5.63 16 22 C -0.15 -2.43 5.63 -28.10 -0.16 -2.59 16 23 C 0.52 8.34 7.41 -11.95 -0.09 8.25 16 24 O -0.49 -9.22 14.76 -19.05 -0.28 -9.50 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 1.05 5.88 -51.93 -0.31 0.75 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.07 5.88 -51.93 -0.31 0.77 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.00 7.60 -51.93 -0.39 0.60 16 36 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 38 H 0.36 7.44 5.66 -40.82 -0.23 7.21 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 41 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 LS Contribution 328.21 15.07 4.95 4.95 Total: -1.00 -31.64 328.21 -6.38 -38.02 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -6.32 Total: 6.87 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 0.39 Total: 8.57 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 0.16 Total: -51.20 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.84 Total: -23.23 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.71 Total: 16.02 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.64 -6.38 -38.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254227355.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.606 kcal (2) G-P(sol) polarization free energy of solvation -31.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds