Wall clock time and date at job start Tue Mar 31 2020 05:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47060 * 2 1 4 4 C 1.53001 * 109.47148 * 240.00160 * 2 1 3 5 5 O 1.45194 * 109.47262 * 120.00114 * 2 1 3 6 6 C 1.34594 * 117.00197 * 60.00276 * 5 2 1 7 7 O 1.21452 * 119.99830 * 359.97438 * 6 5 2 8 8 N 1.34775 * 119.99907 * 180.02562 * 6 5 2 9 9 C 1.45752 * 117.94252 * 179.97438 * 8 6 5 10 10 C 1.52922 * 110.48578 * 199.07201 * 9 8 6 11 11 C 1.53342 * 108.67565 * 309.24866 * 10 9 8 12 12 H 1.08999 * 109.67677 * 307.79803 * 11 10 9 13 13 N 1.46505 * 109.70365 * 187.28243 * 11 10 9 14 14 C 1.36936 * 120.00042 * 156.01539 * 13 11 10 15 15 H 1.07993 * 119.99932 * 0.02562 * 14 13 11 16 16 C 1.38817 * 119.99750 * 179.97438 * 14 13 11 17 17 N 1.31619 * 119.99825 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99977 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47177 * 89.99871 * 18 16 14 20 20 H 1.48501 * 109.46812 * 209.99622 * 18 16 14 21 21 H 1.48495 * 109.47205 * 329.99432 * 18 16 14 22 22 C 1.53069 * 108.42527 * 67.53226 * 11 10 9 23 23 C 1.33182 * 117.99632 * 0.02562 * 8 6 5 24 24 O 1.21233 * 118.11665 * 357.78963 * 23 8 6 25 25 H 1.09001 * 109.47052 * 299.99403 * 1 2 3 26 26 H 1.08992 * 109.47090 * 60.00155 * 1 2 3 27 27 H 1.09005 * 109.46788 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46854 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.46869 * 300.00137 * 3 2 1 30 30 H 1.09001 * 109.46701 * 60.00381 * 3 2 1 31 31 H 1.08998 * 109.47174 * 299.99919 * 4 2 1 32 32 H 1.09004 * 109.47254 * 59.99573 * 4 2 1 33 33 H 1.09000 * 109.47633 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.30135 * 78.76743 * 9 8 6 35 35 H 1.09003 * 109.30184 * 319.38472 * 9 8 6 36 36 H 1.09000 * 109.60631 * 189.48998 * 10 9 8 37 37 H 1.09000 * 109.60237 * 69.00568 * 10 9 8 38 38 H 0.97003 * 119.99343 * 336.01241 * 13 11 10 39 39 H 0.96999 * 119.99896 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.40300 * 71.22794 * 22 11 10 41 41 H 1.09003 * 109.40410 * 191.05547 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6525 -1.9719 1.3382 7 8 0.9514 -2.5088 0.5043 8 7 2.0675 -2.6650 2.4170 9 6 1.6490 -4.0559 2.5377 10 6 1.7913 -4.5341 3.9832 11 6 3.2028 -4.1939 4.4763 12 1 3.9403 -4.5770 3.7709 13 7 3.4234 -4.7936 5.7946 14 6 4.6972 -5.0591 6.2216 15 1 5.5391 -4.8260 5.5867 16 6 4.9062 -5.6268 7.4710 17 7 6.1304 -5.8824 7.8812 18 14 3.4498 -6.0294 8.5695 19 1 2.9886 -7.4135 8.2926 20 1 3.8582 -5.9191 9.9930 21 1 2.3451 -5.0755 8.2961 22 6 3.3268 -2.6715 4.5754 23 6 2.8334 -2.0366 3.3071 24 8 3.1497 -0.8886 3.0793 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6766 -0.2074 -2.1393 33 1 3.1300 -0.7209 -1.2496 34 1 2.2691 -4.6761 1.8904 35 1 0.6076 -4.1469 2.2289 36 1 1.6381 -5.6124 4.0285 37 1 1.0541 -4.0311 4.6090 38 1 2.6672 -5.0026 6.3650 39 1 6.2764 -6.2795 8.7541 40 1 2.7307 -2.3135 5.4148 41 1 4.3714 -2.4027 4.7326 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254227355.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:39 Heat of formation + Delta-G solvation = -115.846340 kcal Electronic energy + Delta-G solvation = -23550.387874 eV Core-core repulsion = 20044.552617 eV Total energy + Delta-G solvation = -3505.835257 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.01044 -40.90904 -38.68019 -38.00795 -36.27536 -35.11603 -34.13184 -31.97753 -30.76611 -28.38333 -28.32741 -26.81632 -24.76689 -24.53366 -22.70982 -21.50882 -20.17841 -19.57065 -18.89753 -18.11559 -18.00354 -16.92654 -16.80281 -16.17976 -16.12917 -15.74042 -15.43854 -15.37260 -14.94725 -14.74133 -14.55887 -14.36649 -13.88575 -13.37941 -13.20232 -13.08908 -12.97425 -12.89907 -12.87917 -12.70987 -12.56812 -12.52795 -12.27357 -12.11310 -11.80582 -11.66239 -11.42531 -11.36568 -11.15188 -10.91469 -10.72848 -9.36768 -7.99040 -5.35271 0.65670 0.90200 1.43938 1.47741 1.54817 1.84265 2.46886 2.52858 3.22125 3.33134 3.57551 3.70072 3.77322 3.77837 3.92922 3.98065 4.09983 4.31119 4.38309 4.44424 4.58844 4.60017 4.72229 4.74054 4.79909 4.81466 4.84530 4.88833 4.92513 5.11052 5.15492 5.24724 5.25692 5.26340 5.48993 5.63253 5.79957 6.23558 6.63006 6.94259 7.10140 7.82113 8.02926 9.22008 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.037713 B = 0.003780 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.275485 B = 7405.391472 C = 7687.791766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.104 3.896 3 C -0.133 4.133 4 C -0.177 4.177 5 O -0.333 6.333 6 C 0.642 3.358 7 O -0.546 6.546 8 N -0.541 5.541 9 C 0.118 3.882 10 C -0.132 4.132 11 C 0.175 3.825 12 H 0.059 0.941 13 N -0.741 5.741 14 C -0.234 4.234 15 H 0.058 0.942 16 C -0.062 4.062 17 N -0.984 5.984 18 Si 0.955 3.045 19 H -0.276 1.276 20 H -0.304 1.304 21 H -0.244 1.244 22 C -0.141 4.141 23 C 0.524 3.476 24 O -0.520 6.520 25 H 0.057 0.943 26 H 0.097 0.903 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.109 0.891 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.088 0.912 38 H 0.372 0.628 39 H 0.257 0.743 40 H 0.113 0.887 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.017 9.499 -16.348 24.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.068 3.932 3 C -0.190 4.190 4 C -0.234 4.234 5 O -0.247 6.247 6 C 0.400 3.600 7 O -0.435 6.435 8 N -0.290 5.290 9 C -0.002 4.002 10 C -0.170 4.170 11 C 0.066 3.934 12 H 0.077 0.923 13 N -0.384 5.384 14 C -0.365 4.365 15 H 0.076 0.924 16 C -0.254 4.254 17 N -0.634 5.634 18 Si 0.782 3.218 19 H -0.202 1.202 20 H -0.231 1.231 21 H -0.168 1.168 22 C -0.183 4.183 23 C 0.315 3.685 24 O -0.394 6.394 25 H 0.076 0.924 26 H 0.116 0.884 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.127 0.873 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.116 0.884 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.130 0.870 36 H 0.135 0.865 37 H 0.106 0.894 38 H 0.206 0.794 39 H 0.066 0.934 40 H 0.131 0.869 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.818 10.014 -16.763 24.512 hybrid contribution -0.041 -0.398 1.081 1.153 sum -14.858 9.616 -15.682 23.646 Atomic orbital electron populations 1.22447 0.93128 1.03929 1.03752 1.22667 0.95305 0.93085 0.82153 1.21839 1.01966 0.91139 1.04069 1.22454 1.01342 1.02336 0.97255 1.86890 1.69610 1.21886 1.46276 1.18711 0.77995 0.81587 0.81694 1.90878 1.39590 1.70903 1.42122 1.45924 1.48012 1.15170 1.19895 1.21809 1.03571 0.76127 0.98696 1.22204 0.96351 1.04605 0.93878 1.20476 0.96767 0.89039 0.87151 0.92278 1.42641 1.04037 1.74734 1.16958 1.19002 0.84985 1.32807 0.99689 0.92417 1.25535 0.98851 1.01621 0.99378 1.69894 1.21581 1.50799 1.21148 0.85419 0.79875 0.78979 0.77523 1.20236 1.23106 1.16789 1.22448 1.03428 0.99592 0.92835 1.21115 0.75996 0.86097 0.85313 1.90788 1.54304 1.18693 1.75644 0.92404 0.88413 0.91412 0.92195 0.87258 0.91985 0.91460 0.88363 0.92656 0.88847 0.86953 0.86518 0.89353 0.79409 0.93405 0.86906 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.39 8.37 71.98 0.60 -2.79 16 2 C 0.10 2.32 1.13 -10.79 -0.01 2.31 16 3 C -0.13 -2.35 8.85 71.98 0.64 -1.72 16 4 C -0.18 -3.55 8.37 71.98 0.60 -2.95 16 5 O -0.33 -10.10 7.08 -47.20 -0.33 -10.44 16 6 C 0.64 18.95 7.53 129.79 0.98 19.93 16 7 O -0.55 -15.82 11.43 20.00 0.23 -15.59 16 8 N -0.54 -14.92 2.91 -889.76 -2.59 -17.51 16 9 C 0.12 2.46 5.91 86.49 0.51 2.97 16 10 C -0.13 -2.88 5.50 30.68 0.17 -2.71 16 11 C 0.17 5.52 2.84 45.13 0.13 5.64 16 12 H 0.06 1.99 8.07 -2.39 -0.02 1.97 16 13 N -0.74 -29.92 4.95 -322.28 -1.59 -31.51 16 14 C -0.23 -12.29 10.42 84.03 0.88 -11.41 16 15 H 0.06 3.38 8.06 -2.91 -0.02 3.35 16 16 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 17 N -0.98 -61.04 13.97 21.65 0.30 -60.74 16 18 Si 0.95 42.31 27.74 68.60 1.90 44.21 16 19 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 21 H -0.24 -9.37 6.52 99.48 0.65 -8.72 16 22 C -0.14 -4.47 5.63 29.71 0.17 -4.30 16 23 C 0.52 16.61 7.41 87.74 0.65 17.26 16 24 O -0.52 -19.58 14.76 20.68 0.31 -19.27 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 1.56 5.88 -2.38 -0.01 1.54 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 29 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.61 5.88 -2.39 -0.01 1.59 16 32 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.11 2.01 7.60 -2.39 -0.02 2.00 16 36 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.09 1.73 8.12 -2.39 -0.02 1.71 16 38 H 0.37 14.03 5.66 -92.71 -0.52 13.50 16 39 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 40 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 41 H 0.09 3.22 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -70.21 328.21 4.44 -65.77 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.44 Total: 25.84 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: 5.78 Total: 19.24 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -3.88 Total: -109.76 kcal Atomic # 8 Polarization: -45.50 SS G_CDS: 0.20 Total: -45.30 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.90 Total: 44.21 kcal Total: -70.21 4.44 -65.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254227355.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.076 kcal (2) G-P(sol) polarization free energy of solvation -70.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds