Wall clock time and date at job start Tue Mar 31 2020 06:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34641 * 116.99811 * 2 1 4 4 O 1.21508 * 119.99898 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99972 * 179.97438 * 3 2 1 6 6 C 1.46498 * 119.99920 * 180.02562 * 5 3 2 7 7 C 1.53070 * 109.44278 * 84.79819 * 6 5 3 8 8 C 1.53195 * 109.29524 * 181.23594 * 7 6 5 9 9 N 1.46919 * 108.89273 * 305.57804 * 8 7 6 10 10 C 1.34783 * 120.63144 * 233.55709 * 9 8 7 11 11 O 1.21274 * 119.99655 * 0.02562 * 10 9 8 12 12 C 1.50698 * 119.99922 * 179.97438 * 10 9 8 13 13 C 1.52999 * 109.47009 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47500 * 180.02562 * 13 12 10 15 15 H 1.08003 * 119.99447 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00503 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99596 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00214 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47397 * 59.99803 * 18 16 14 20 20 H 1.48506 * 109.47166 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46895 * 299.99552 * 18 16 14 22 22 C 1.46928 * 118.73982 * 53.53793 * 9 8 7 23 23 C 1.53039 * 109.46033 * 205.00305 * 6 5 3 24 24 H 1.08996 * 109.47512 * 300.00369 * 1 2 3 25 25 H 1.09010 * 109.47015 * 60.00439 * 1 2 3 26 26 H 1.09001 * 109.46794 * 179.97438 * 1 2 3 27 27 H 0.97004 * 120.00060 * 0.02562 * 5 3 2 28 28 H 1.09007 * 109.45852 * 324.97047 * 6 5 3 29 29 H 1.08997 * 109.38860 * 61.35781 * 7 6 5 30 30 H 1.09003 * 109.62046 * 301.25123 * 7 6 5 31 31 H 1.09002 * 109.58720 * 185.71834 * 8 7 6 32 32 H 1.08996 * 109.58651 * 65.43731 * 8 7 6 33 33 H 1.09001 * 109.47385 * 300.00399 * 12 10 9 34 34 H 1.08997 * 109.47457 * 60.00250 * 12 10 9 35 35 H 1.09001 * 109.46917 * 300.00128 * 13 12 10 36 36 H 1.08997 * 109.47262 * 59.99573 * 13 12 10 37 37 H 0.97003 * 119.99721 * 180.02562 * 17 16 14 38 38 H 1.08998 * 109.58787 * 66.18123 * 22 9 8 39 39 H 1.09007 * 109.58600 * 186.46436 * 22 9 8 40 40 H 1.09002 * 109.49876 * 58.67575 * 23 6 5 41 41 H 1.09005 * 109.52615 * 298.59825 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4013 2.2187 -0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.0741 2.5756 0.0011 7 6 4.1883 3.0886 1.4387 8 6 4.8562 4.4673 1.4327 9 7 6.1372 4.3722 0.7195 10 6 7.2788 4.7930 1.2993 11 8 7.2550 5.2551 2.4204 12 6 8.5850 4.6882 0.5551 13 6 9.7161 5.2301 1.4313 14 6 11.0223 5.1260 0.6868 15 1 11.0435 4.7140 -0.3113 16 6 12.1901 5.5565 1.2799 17 7 12.1643 6.0577 2.4955 18 14 13.8090 5.4281 0.3568 19 1 13.7289 6.2217 -0.8958 20 1 14.9069 5.9539 1.2073 21 1 14.0782 4.0058 0.0253 22 6 6.1502 3.8092 -0.6375 23 6 5.4710 2.4364 -0.6083 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 3.9374 0.4567 0.0005 28 1 3.4893 3.2813 -0.5889 29 1 4.7916 2.3946 2.0238 30 1 3.1943 3.1679 1.8791 31 1 5.0321 4.7927 2.4580 32 1 4.2092 5.1845 0.9277 33 1 8.7822 3.6440 0.3124 34 1 8.5268 5.2702 -0.3647 35 1 9.5191 6.2743 1.6743 36 1 9.7742 4.6479 2.3509 37 1 12.9859 6.3610 2.9127 38 1 5.6078 4.4709 -1.3129 39 1 7.1798 3.7026 -0.9791 40 1 5.3880 2.0499 -1.6241 41 1 6.0648 1.7494 -0.0052 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261775728.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:49 Heat of formation + Delta-G solvation = -128.108756 kcal Electronic energy + Delta-G solvation = -22394.907394 eV Core-core repulsion = 18888.540398 eV Total energy + Delta-G solvation = -3506.366995 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.86176 -39.82282 -37.89442 -36.47452 -34.80187 -33.53470 -31.87910 -31.26334 -30.51606 -27.91964 -26.05266 -24.70269 -23.46701 -22.03163 -21.44655 -20.61685 -19.22100 -18.32476 -17.41414 -16.97056 -16.76221 -15.96075 -15.50174 -15.28051 -15.22424 -14.52544 -14.43503 -14.38738 -13.96857 -13.63185 -13.26402 -13.04195 -12.55023 -12.42186 -12.24974 -12.11564 -11.94018 -11.44349 -11.29277 -11.15423 -11.04247 -10.92114 -10.90326 -10.85167 -10.60944 -9.96459 -9.64843 -9.47617 -9.18868 -9.00040 -8.49555 -8.31650 -5.96225 -4.00895 1.86639 2.52291 3.19012 3.23955 3.33887 3.38923 3.40443 3.91422 4.37076 4.46161 4.55776 4.78836 4.81172 4.87162 4.92377 5.09992 5.11521 5.15931 5.34337 5.38549 5.40173 5.51686 5.60073 5.72163 5.79446 5.89638 5.96632 6.07987 6.11778 6.18389 6.20322 6.69831 6.88822 7.07447 7.71351 7.73745 7.85742 8.02010 8.06901 8.37721 8.72443 9.07386 9.62586 11.14665 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.041245 B = 0.002779 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.714601 B =10072.865265 C =10448.224450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.375 6.375 3 C 0.646 3.354 4 O -0.571 6.571 5 N -0.704 5.704 6 C 0.163 3.837 7 C -0.145 4.145 8 C 0.114 3.886 9 N -0.628 5.628 10 C 0.513 3.487 11 O -0.532 6.532 12 C -0.129 4.129 13 C 0.037 3.963 14 C -0.528 4.528 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.889 5.889 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.114 3.886 23 C -0.143 4.143 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.102 0.898 27 H 0.407 0.593 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.261 0.739 38 H 0.069 0.931 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.209 -12.561 -8.282 26.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.289 6.289 3 C 0.398 3.602 4 O -0.460 6.460 5 N -0.362 5.362 6 C 0.060 3.940 7 C -0.184 4.184 8 C -0.009 4.009 9 N -0.364 5.364 10 C 0.304 3.696 11 O -0.407 6.407 12 C -0.168 4.168 13 C -0.001 4.001 14 C -0.566 4.566 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.010 4.010 23 C -0.182 4.182 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.120 0.880 27 H 0.242 0.758 28 H 0.112 0.888 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.042 0.958 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.118 0.882 40 H 0.102 0.898 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.494 -11.740 -7.515 25.618 hybrid contribution 0.880 -0.510 -0.503 1.134 sum -20.614 -12.250 -8.017 25.284 Atomic orbital electron populations 1.23193 0.74336 1.03455 1.02789 1.86244 1.24287 1.31243 1.87108 1.18198 0.83575 0.82169 0.76251 1.91010 1.64596 1.34839 1.55537 1.44845 1.02868 1.10638 1.77889 1.21044 0.92882 0.82747 0.97355 1.22361 1.01734 0.97912 0.96429 1.21424 0.84383 0.95512 0.99594 1.48353 1.07464 1.64236 1.16367 1.21600 0.85414 0.75862 0.86742 1.90662 1.86351 1.44136 1.19549 1.21886 0.91892 1.02540 1.00521 1.18905 0.89767 0.97107 0.94306 1.21174 0.92264 1.41823 1.01333 0.92669 1.25028 0.99156 0.95290 0.94926 1.69992 1.27806 1.41470 1.13528 0.86650 0.83247 0.78326 0.79680 1.20246 1.21301 1.20267 1.21620 1.02735 0.92642 0.84005 1.22251 0.94639 0.99202 1.02116 0.91803 0.91839 0.87991 0.75826 0.88817 0.91031 0.90364 0.88608 0.91701 0.90254 0.90215 0.95829 0.95857 0.92886 0.91231 0.88162 0.89785 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.36 10.56 101.05 1.07 1.43 16 2 O -0.38 -3.47 10.62 -40.33 -0.43 -3.90 16 3 C 0.65 7.02 8.71 54.05 0.47 7.49 16 4 O -0.57 -7.92 15.79 -19.28 -0.30 -8.22 16 5 N -0.70 -6.11 5.08 -58.67 -0.30 -6.40 16 6 C 0.16 1.51 2.41 -67.88 -0.16 1.34 16 7 C -0.14 -1.56 5.66 -26.59 -0.15 -1.71 16 8 C 0.11 1.46 6.43 -3.71 -0.02 1.44 16 9 N -0.63 -8.85 2.97 -172.77 -0.51 -9.36 16 10 C 0.51 9.82 7.70 -10.98 -0.08 9.73 16 11 O -0.53 -12.53 15.39 5.56 0.09 -12.44 16 12 C -0.13 -2.55 3.98 -27.88 -0.11 -2.66 16 13 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 14 C -0.53 -14.80 9.11 -34.44 -0.31 -15.11 16 15 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -27.34 13.29 55.43 0.74 -26.60 16 18 Si 0.89 21.50 29.54 -169.99 -5.02 16.47 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 C 0.11 1.15 6.34 -3.71 -0.02 1.13 16 23 C -0.14 -1.15 5.55 -26.61 -0.15 -1.29 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 26 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.41 2.64 8.71 -40.82 -0.36 2.28 16 28 H 0.09 0.96 7.58 -51.93 -0.39 0.57 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.10 1.43 7.00 -51.93 -0.36 1.06 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.41 7.69 -51.93 -0.40 1.01 16 34 H 0.08 1.44 7.94 -51.93 -0.41 1.02 16 35 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 1.00 5.93 -51.92 -0.31 0.69 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 340.56 15.07 5.13 5.13 Total: -1.00 -36.04 340.56 -6.73 -42.76 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -6.42 Total: -1.66 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 0.30 Total: 4.22 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: -0.08 Total: -42.37 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.65 Total: -24.56 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -36.04 -6.73 -42.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261775728.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.345 kcal (2) G-P(sol) polarization free energy of solvation -36.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds