Wall clock time and date at job start Tue Mar 31 2020 06:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34641 * 116.99811 * 2 1 4 4 O 1.21508 * 119.99898 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99972 * 179.97438 * 3 2 1 6 6 C 1.46498 * 119.99920 * 180.02562 * 5 3 2 7 7 C 1.53070 * 109.44278 * 84.79819 * 6 5 3 8 8 C 1.53195 * 109.29524 * 181.23594 * 7 6 5 9 9 N 1.46919 * 108.89273 * 305.57804 * 8 7 6 10 10 C 1.34783 * 120.63144 * 233.55709 * 9 8 7 11 11 O 1.21274 * 119.99655 * 0.02562 * 10 9 8 12 12 C 1.50698 * 119.99922 * 179.97438 * 10 9 8 13 13 C 1.52999 * 109.47009 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47500 * 180.02562 * 13 12 10 15 15 H 1.08003 * 119.99447 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00503 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99596 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00214 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47397 * 59.99803 * 18 16 14 20 20 H 1.48506 * 109.47166 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46895 * 299.99552 * 18 16 14 22 22 C 1.46928 * 118.73982 * 53.53793 * 9 8 7 23 23 C 1.53039 * 109.46033 * 205.00305 * 6 5 3 24 24 H 1.08996 * 109.47512 * 300.00369 * 1 2 3 25 25 H 1.09010 * 109.47015 * 60.00439 * 1 2 3 26 26 H 1.09001 * 109.46794 * 179.97438 * 1 2 3 27 27 H 0.97004 * 120.00060 * 0.02562 * 5 3 2 28 28 H 1.09007 * 109.45852 * 324.97047 * 6 5 3 29 29 H 1.08997 * 109.38860 * 61.35781 * 7 6 5 30 30 H 1.09003 * 109.62046 * 301.25123 * 7 6 5 31 31 H 1.09002 * 109.58720 * 185.71834 * 8 7 6 32 32 H 1.08996 * 109.58651 * 65.43731 * 8 7 6 33 33 H 1.09001 * 109.47385 * 300.00399 * 12 10 9 34 34 H 1.08997 * 109.47457 * 60.00250 * 12 10 9 35 35 H 1.09001 * 109.46917 * 300.00128 * 13 12 10 36 36 H 1.08997 * 109.47262 * 59.99573 * 13 12 10 37 37 H 0.97003 * 119.99721 * 180.02562 * 17 16 14 38 38 H 1.08998 * 109.58787 * 66.18123 * 22 9 8 39 39 H 1.09007 * 109.58600 * 186.46436 * 22 9 8 40 40 H 1.09002 * 109.49876 * 58.67575 * 23 6 5 41 41 H 1.09005 * 109.52615 * 298.59825 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4013 2.2187 -0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.0741 2.5756 0.0011 7 6 4.1883 3.0886 1.4387 8 6 4.8562 4.4673 1.4327 9 7 6.1372 4.3722 0.7195 10 6 7.2788 4.7930 1.2993 11 8 7.2550 5.2551 2.4204 12 6 8.5850 4.6882 0.5551 13 6 9.7161 5.2301 1.4313 14 6 11.0223 5.1260 0.6868 15 1 11.0435 4.7140 -0.3113 16 6 12.1901 5.5565 1.2799 17 7 12.1643 6.0577 2.4955 18 14 13.8090 5.4281 0.3568 19 1 13.7289 6.2217 -0.8958 20 1 14.9069 5.9539 1.2073 21 1 14.0782 4.0058 0.0253 22 6 6.1502 3.8092 -0.6375 23 6 5.4710 2.4364 -0.6083 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 3.9374 0.4567 0.0005 28 1 3.4893 3.2813 -0.5889 29 1 4.7916 2.3946 2.0238 30 1 3.1943 3.1679 1.8791 31 1 5.0321 4.7927 2.4580 32 1 4.2092 5.1845 0.9277 33 1 8.7822 3.6440 0.3124 34 1 8.5268 5.2702 -0.3647 35 1 9.5191 6.2743 1.6743 36 1 9.7742 4.6479 2.3509 37 1 12.9859 6.3610 2.9127 38 1 5.6078 4.4709 -1.3129 39 1 7.1798 3.7026 -0.9791 40 1 5.3880 2.0499 -1.6241 41 1 6.0648 1.7494 -0.0052 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261775728.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:49 Heat of formation + Delta-G solvation = -154.976266 kcal Electronic energy + Delta-G solvation = -22396.072456 eV Core-core repulsion = 18888.540398 eV Total energy + Delta-G solvation = -3507.532058 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.70115 -41.02881 -38.95851 -37.38723 -35.80603 -35.58312 -33.36842 -32.21803 -31.96922 -28.56983 -27.81321 -25.83182 -24.56492 -23.42810 -22.46359 -21.70451 -20.24437 -19.39112 -18.82745 -18.11153 -17.61553 -17.49142 -16.75579 -16.62767 -16.40728 -16.13999 -15.29427 -15.20054 -15.02967 -14.70513 -14.38963 -14.23864 -14.16565 -13.69658 -13.37633 -13.17826 -13.02417 -12.94371 -12.75365 -12.50057 -12.28281 -12.03170 -11.88803 -11.83727 -11.77049 -11.74105 -11.51206 -11.29279 -10.66127 -10.53851 -10.27309 -9.68162 -8.15611 -6.29756 1.17082 1.44032 1.48586 1.56154 1.70296 1.71409 2.03972 2.45291 3.17415 3.24747 3.61042 3.66631 3.92259 4.03710 4.08265 4.27289 4.35282 4.37563 4.39193 4.47854 4.51578 4.58280 4.68944 4.74045 4.77367 4.82857 4.93621 5.03360 5.12168 5.14436 5.31722 5.39875 5.50820 5.62800 5.65177 5.87617 6.19451 6.35746 6.41453 6.89038 7.26866 7.28151 7.40664 8.96931 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.041245 B = 0.002779 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.714601 B =10072.865265 C =10448.224450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.376 6.376 3 C 0.642 3.358 4 O -0.606 6.606 5 N -0.691 5.691 6 C 0.168 3.832 7 C -0.135 4.135 8 C 0.113 3.887 9 N -0.614 5.614 10 C 0.511 3.489 11 O -0.592 6.592 12 C -0.115 4.115 13 C 0.041 3.959 14 C -0.541 4.541 15 H 0.079 0.921 16 C -0.009 4.009 17 N -0.939 5.939 18 Si 0.974 3.026 19 H -0.262 1.262 20 H -0.290 1.290 21 H -0.261 1.261 22 C 0.103 3.897 23 C -0.132 4.132 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.135 0.865 27 H 0.420 0.580 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.105 0.895 35 H -0.021 1.021 36 H -0.020 1.020 37 H 0.262 0.738 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.116 0.884 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.374 -14.580 -11.482 28.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.290 6.290 3 C 0.395 3.605 4 O -0.497 6.497 5 N -0.350 5.350 6 C 0.064 3.936 7 C -0.174 4.174 8 C -0.010 4.010 9 N -0.348 5.348 10 C 0.301 3.699 11 O -0.472 6.472 12 C -0.154 4.154 13 C 0.004 3.996 14 C -0.579 4.579 15 H 0.097 0.903 16 C -0.206 4.206 17 N -0.579 5.579 18 Si 0.798 3.202 19 H -0.186 1.186 20 H -0.216 1.216 21 H -0.185 1.185 22 C -0.019 4.019 23 C -0.171 4.171 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.153 0.847 27 H 0.257 0.743 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.126 0.874 34 H 0.124 0.876 35 H -0.002 1.002 36 H -0.001 1.001 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.127 0.873 40 H 0.134 0.866 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.698 -13.828 -10.782 27.898 hybrid contribution 0.802 0.093 0.506 0.953 sum -20.896 -13.734 -10.276 27.035 Atomic orbital electron populations 1.23482 0.72881 1.05561 1.02520 1.86257 1.25739 1.30217 1.86750 1.18404 0.84026 0.82167 0.75861 1.90989 1.65466 1.36059 1.57193 1.44720 1.02324 1.11012 1.76970 1.20952 0.93779 0.82972 0.95881 1.22237 1.00892 0.96447 0.97857 1.21481 0.83987 0.97281 0.98232 1.48297 1.06284 1.62440 1.17737 1.21452 0.86623 0.75825 0.85963 1.90644 1.87275 1.47237 1.22072 1.21643 0.89927 1.04104 0.99747 1.18700 0.92774 0.94107 0.94038 1.21692 0.92675 1.41248 1.02248 0.90284 1.26163 1.03954 0.94731 0.95780 1.70186 1.28974 1.42947 1.15828 0.85368 0.77360 0.79190 0.78286 1.18623 1.21629 1.18533 1.22029 1.04093 0.94159 0.81632 1.22190 0.93107 0.97854 1.03913 0.92312 0.91940 0.84720 0.74294 0.89257 0.91555 0.90895 0.91432 0.90091 0.87431 0.87647 1.00249 1.00141 0.92944 0.88936 0.87315 0.86603 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.55 10.56 113.37 1.20 1.75 16 2 O -0.38 -6.25 10.62 -55.50 -0.59 -6.84 16 3 C 0.64 12.90 8.71 129.79 1.13 14.03 16 4 O -0.61 -16.20 15.79 19.82 0.31 -15.89 16 5 N -0.69 -10.29 5.08 -569.95 -2.90 -13.18 16 6 C 0.17 2.68 2.41 45.03 0.11 2.79 16 7 C -0.13 -2.78 5.66 30.68 0.17 -2.60 16 8 C 0.11 2.87 6.43 86.36 0.56 3.43 16 9 N -0.61 -16.58 2.97 -818.91 -2.44 -19.02 16 10 C 0.51 19.76 7.70 87.66 0.67 20.43 16 11 O -0.59 -29.53 15.39 -3.01 -0.05 -29.58 16 12 C -0.11 -4.46 3.98 29.85 0.12 -4.35 16 13 C 0.04 2.29 4.26 29.85 0.13 2.42 16 14 C -0.54 -30.31 9.11 25.60 0.23 -30.07 16 15 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 16 C -0.01 -0.52 5.46 84.65 0.46 -0.06 16 17 N -0.94 -59.69 13.29 21.45 0.28 -59.40 16 18 Si 0.97 43.78 29.54 68.60 2.03 45.81 16 19 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 20 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 22 C 0.10 1.72 6.34 86.36 0.55 2.27 16 23 C -0.13 -1.61 5.55 30.67 0.17 -1.44 16 24 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 26 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.42 4.17 8.71 -92.71 -0.81 3.36 16 28 H 0.09 1.60 7.58 -2.38 -0.02 1.58 16 29 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.07 2.12 7.00 -2.39 -0.02 2.11 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.11 3.57 7.69 -2.39 -0.02 3.55 16 34 H 0.11 3.56 7.94 -2.39 -0.02 3.54 16 35 H -0.02 -1.33 8.10 -2.39 -0.02 -1.34 16 36 H -0.02 -1.25 8.10 -2.39 -0.02 -1.27 16 37 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 38 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.11 1.71 5.93 -2.38 -0.01 1.69 16 40 H 0.12 0.80 8.14 -2.39 -0.02 0.79 16 41 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 Total: -1.00 -83.11 340.56 2.38 -80.73 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 0.22 Total: 8.77 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 5.50 Total: 8.60 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -5.05 Total: -91.60 kcal Atomic # 8 Polarization: -51.98 SS G_CDS: -0.32 Total: -52.30 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -83.11 2.38 -80.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261775728.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.247 kcal (2) G-P(sol) polarization free energy of solvation -83.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds