Wall clock time and date at job start Tue Mar 31 2020 06:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81396 * 103.00169 * 2 1 4 4 H 1.09001 * 109.46704 * 305.00001 * 3 2 1 5 5 C 1.53006 * 109.47254 * 64.99674 * 3 2 1 6 6 C 1.50698 * 109.47470 * 185.00043 * 3 2 1 7 7 N 1.30301 * 126.34050 * 314.68894 * 6 3 2 8 8 N 1.28533 * 110.04735 * 179.82016 * 7 6 3 9 9 C 1.31212 * 109.85979 * 0.45411 * 8 7 6 10 10 N 1.38580 * 126.47040 * 179.73121 * 9 8 7 11 11 C 1.46909 * 110.99825 * 236.04077 * 10 9 8 12 12 C 1.46894 * 111.00227 * 359.97438 * 10 9 8 13 13 H 1.08997 * 109.47208 * 55.00427 * 12 10 9 14 14 C 1.52996 * 109.47333 * 295.00032 * 12 10 9 15 15 C 1.50700 * 109.47429 * 175.00072 * 12 10 9 16 16 H 1.08005 * 119.99644 * 0.02562 * 15 12 10 17 17 C 1.37880 * 120.00305 * 180.02562 * 15 12 10 18 18 N 1.31511 * 119.99704 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 120.00233 * 180.02562 * 17 15 12 20 20 H 1.48507 * 109.46856 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47352 * 119.99632 * 19 17 15 22 22 H 1.48497 * 109.47092 * 240.00291 * 19 17 15 23 23 N 1.36450 * 107.05555 * 359.72684 * 9 8 7 24 24 C 1.46508 * 127.13789 * 180.02562 * 23 9 8 25 25 H 1.08994 * 109.47152 * 300.00012 * 1 2 3 26 26 H 1.08997 * 109.46834 * 60.00397 * 1 2 3 27 27 H 1.09002 * 109.47147 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47002 * 59.99950 * 5 3 2 29 29 H 1.08993 * 109.46955 * 180.02562 * 5 3 2 30 30 H 1.09000 * 109.47050 * 300.00216 * 5 3 2 31 31 H 1.08997 * 109.46610 * 60.00283 * 11 10 9 32 32 H 1.09000 * 109.46596 * 180.02562 * 11 10 9 33 33 H 1.08994 * 109.46997 * 299.99764 * 11 10 9 34 34 H 1.09008 * 109.46854 * 60.00020 * 14 12 10 35 35 H 1.08998 * 109.47324 * 179.97438 * 14 12 10 36 36 H 1.08997 * 109.47296 * 300.00341 * 14 12 10 37 37 H 0.96999 * 119.99841 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.47262 * 269.98032 * 24 23 9 39 39 H 1.09002 * 109.46874 * 29.97704 * 24 23 9 40 40 H 1.08990 * 109.47040 * 149.97559 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.7295 2.2540 -0.8418 5 6 1.7428 2.4016 1.3074 6 6 3.7143 1.9386 -0.1238 7 7 4.6244 1.2784 0.5346 8 7 5.7960 1.6728 0.1825 9 6 5.6950 2.6201 -0.7198 10 7 6.7424 3.2913 -1.3302 11 6 6.6176 4.7431 -1.1431 12 6 8.0379 2.8066 -0.8356 13 1 8.0967 1.7264 -0.9691 14 6 8.1756 3.1452 0.6500 15 6 9.1501 3.4692 -1.6070 16 1 8.9177 4.1798 -2.3865 17 6 10.4642 3.1684 -1.3177 18 7 10.7470 2.3028 -0.3688 19 14 11.8428 3.9903 -2.2734 20 1 11.2637 4.9160 -3.2799 21 1 12.7072 4.7535 -1.3377 22 1 12.6531 2.9543 -2.9628 23 7 4.3638 2.8193 -0.9435 24 6 3.7563 3.7778 -1.8702 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 2.2354 1.9150 2.1492 29 1 1.9876 3.4637 1.3071 30 1 0.6636 2.2779 1.3969 31 1 6.6279 4.9742 -0.0779 32 1 7.4521 5.2455 -1.6324 33 1 5.6803 5.0865 -1.5805 34 1 7.3712 2.6658 1.2080 35 1 9.1367 2.7851 1.0172 36 1 8.1169 4.2253 0.7835 37 1 11.6714 2.0909 -0.1655 38 1 3.5861 4.7233 -1.3553 39 1 4.4252 3.9397 -2.7155 40 1 2.8059 3.3834 -2.2294 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262888893.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:45 Heat of formation + Delta-G solvation = 81.371025 kcal Electronic energy + Delta-G solvation = -21023.907174 eV Core-core repulsion = 18001.669526 eV Total energy + Delta-G solvation = -3022.237648 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.99003 -39.14541 -36.23304 -35.27262 -34.36705 -30.92739 -30.36251 -29.41858 -28.58142 -27.30028 -26.75478 -25.18574 -23.48619 -21.71532 -21.19560 -18.40442 -18.01908 -17.53794 -17.46095 -16.88935 -16.59185 -16.08324 -15.37312 -15.20353 -15.08800 -14.57529 -14.53490 -14.20914 -13.93038 -13.89547 -13.52455 -13.34574 -13.07524 -12.94042 -12.76735 -12.69410 -12.65382 -12.43759 -12.27783 -12.10164 -11.97802 -11.38762 -11.11588 -10.90400 -10.86900 -10.53959 -10.51011 -9.02427 -8.69767 -8.12463 -6.27995 0.31429 0.94400 1.40931 1.45104 1.47178 1.58490 1.64013 1.94239 2.42137 2.95764 3.16909 3.21208 3.66072 3.76085 3.92384 4.10529 4.28408 4.33571 4.41210 4.42790 4.49202 4.53486 4.61352 4.66309 4.70545 4.79912 4.94802 4.98064 4.99066 5.07832 5.13436 5.19113 5.43538 5.59248 5.59791 5.84600 6.03850 6.20045 6.55770 6.81747 7.41066 7.86046 8.94661 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.036880 B = 0.003961 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.043215 B = 7066.806115 C = 7354.304663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.286 6.286 3 C 0.048 3.952 4 H 0.133 0.867 5 C -0.136 4.136 6 C 0.177 3.823 7 N -0.308 5.308 8 N -0.368 5.368 9 C 0.372 3.628 10 N -0.453 5.453 11 C 0.031 3.969 12 C 0.240 3.760 13 H 0.002 0.998 14 C -0.152 4.152 15 C -0.524 4.524 16 H 0.074 0.926 17 C 0.011 3.989 18 N -0.920 5.920 19 Si 0.971 3.029 20 H -0.258 1.258 21 H -0.280 1.280 22 H -0.285 1.285 23 N -0.480 5.480 24 C 0.063 3.937 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.111 0.889 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.025 0.975 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.031 0.969 35 H 0.062 0.938 36 H 0.032 0.968 37 H 0.263 0.737 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.625 6.008 -2.395 24.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.061 6.061 3 C -0.082 4.082 4 H 0.151 0.849 5 C -0.196 4.196 6 C -0.093 4.093 7 N -0.147 5.147 8 N -0.213 5.213 9 C 0.014 3.986 10 N -0.176 5.176 11 C -0.115 4.115 12 C 0.134 3.866 13 H 0.020 0.980 14 C -0.212 4.212 15 C -0.563 4.563 16 H 0.092 0.908 17 C -0.189 4.189 18 N -0.558 5.558 19 Si 0.796 3.204 20 H -0.181 1.181 21 H -0.206 1.206 22 H -0.211 1.211 23 N -0.177 5.177 24 C -0.078 4.078 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.129 0.871 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.118 0.882 31 H 0.044 0.956 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -22.185 4.013 -1.909 22.626 hybrid contribution 0.162 1.790 -0.372 1.836 sum -22.023 5.804 -2.281 22.889 Atomic orbital electron populations 1.23565 0.90243 1.07751 1.06572 1.87968 1.10876 1.09210 1.98064 1.21345 0.85886 0.96241 1.04763 0.84911 1.22062 1.02895 1.00925 0.93697 1.24173 0.96800 0.93655 0.94651 1.73896 0.94976 1.22991 1.22856 1.74753 1.16234 1.16180 1.14089 1.23201 0.83996 0.97456 0.93922 1.59210 1.00719 1.06146 1.51541 1.22560 1.04350 0.84349 1.00250 1.18942 0.82081 0.94270 0.91328 0.97990 1.22164 1.01588 0.98232 0.99175 1.21356 0.90288 1.25655 1.18953 0.90813 1.25821 1.01307 0.95653 0.96079 1.70100 1.19504 1.34482 1.31753 0.85306 0.78417 0.78208 0.78459 1.18144 1.20613 1.21097 1.46170 1.04471 1.32282 1.34772 1.22554 1.00768 0.91819 0.92637 0.88618 0.88647 0.87069 0.92745 0.90758 0.88159 0.95615 0.89097 0.88751 0.94989 0.91944 0.94908 0.92829 0.87766 0.88575 0.86346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.45 113.37 1.19 -0.08 16 2 S -0.29 -6.87 21.64 -56.49 -1.22 -8.09 16 3 C 0.05 1.02 3.18 29.85 0.09 1.12 16 4 H 0.13 1.80 6.96 -2.39 -0.02 1.78 16 5 C -0.14 -2.30 9.08 71.98 0.65 -1.65 16 6 C 0.18 5.78 6.68 137.64 0.92 6.70 16 7 N -0.31 -13.52 11.99 -49.54 -0.59 -14.11 16 8 N -0.37 -18.27 9.32 -58.01 -0.54 -18.82 16 9 C 0.37 15.95 6.75 260.12 1.76 17.70 16 10 N -0.45 -20.00 4.81 -711.02 -3.42 -23.42 16 11 C 0.03 1.10 8.60 127.69 1.10 2.19 16 12 C 0.24 12.94 2.03 44.17 0.09 13.03 16 13 H 0.00 0.14 7.95 -2.39 -0.02 0.12 16 14 C -0.15 -8.17 8.26 71.98 0.59 -7.58 16 15 C -0.52 -28.58 7.88 25.60 0.20 -28.38 16 16 H 0.07 3.80 6.77 -2.91 -0.02 3.78 16 17 C 0.01 0.59 5.30 84.66 0.45 1.04 16 18 N -0.92 -54.76 11.32 21.45 0.24 -54.51 16 19 Si 0.97 43.17 29.54 68.60 2.03 45.20 16 20 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 21 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 23 N -0.48 -15.13 3.21 -538.19 -1.73 -16.86 16 24 C 0.06 1.11 9.29 127.77 1.19 2.30 16 25 H 0.09 0.77 7.14 -2.39 -0.02 0.75 16 26 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.10 1.00 6.92 -2.39 -0.02 0.98 16 31 H 0.03 0.93 6.50 -2.39 -0.02 0.92 16 32 H 0.09 3.28 6.41 -2.39 -0.02 3.26 16 33 H 0.09 2.38 5.41 -2.39 -0.01 2.37 16 34 H 0.03 1.72 5.88 -2.38 -0.01 1.70 16 35 H 0.06 3.70 6.07 -2.39 -0.01 3.68 16 36 H 0.03 1.62 6.47 -2.39 -0.02 1.60 16 37 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 38 H 0.10 1.29 7.85 -2.39 -0.02 1.27 16 39 H 0.10 1.79 7.57 -2.39 -0.02 1.77 16 40 H 0.12 1.26 7.11 -2.39 -0.02 1.25 16 Total: -1.00 -78.36 326.54 4.04 -74.32 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 1.04 Total: 9.90 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 8.23 Total: 6.40 kcal Atomic # 7 Polarization: -121.69 SS G_CDS: -6.03 Total: -127.72 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: -6.87 SS G_CDS: -1.22 Total: -8.09 kcal Total: -78.36 4.04 -74.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262888893.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.692 kcal (2) G-P(sol) polarization free energy of solvation -78.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds