Wall clock time and date at job start Tue Mar 31 2020 06:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81401 * 102.99894 * 2 1 4 4 H 1.09001 * 109.47254 * 54.99767 * 3 2 1 5 5 C 1.52998 * 109.47253 * 295.00208 * 3 2 1 6 6 C 1.50702 * 109.47075 * 174.99995 * 3 2 1 7 7 N 1.30289 * 126.34690 * 45.02336 * 6 3 2 8 8 N 1.28527 * 110.05434 * 180.02562 * 7 6 3 9 9 C 1.31218 * 109.85842 * 0.02562 * 8 7 6 10 10 N 1.38586 * 126.47132 * 180.02562 * 9 8 7 11 11 C 1.46897 * 110.99815 * 236.02108 * 10 9 8 12 12 C 1.46902 * 111.00187 * 359.97438 * 10 9 8 13 13 H 1.09001 * 109.47269 * 300.00365 * 12 10 9 14 14 C 1.52998 * 109.46811 * 59.99915 * 12 10 9 15 15 C 1.50699 * 109.47312 * 180.02562 * 12 10 9 16 16 H 1.08005 * 119.99826 * 359.97438 * 15 12 10 17 17 C 1.37872 * 120.00057 * 180.02562 * 15 12 10 18 18 N 1.31519 * 120.00137 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 119.99971 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.46928 * 59.99984 * 19 17 15 21 21 H 1.48505 * 109.46886 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47261 * 299.99579 * 19 17 15 23 23 N 1.36453 * 107.05267 * 359.73639 * 9 8 7 24 24 C 1.46499 * 127.13337 * 180.26158 * 23 9 8 25 25 H 1.09002 * 109.47124 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46975 * 59.99980 * 1 2 3 27 27 H 1.09004 * 109.47147 * 299.99944 * 1 2 3 28 28 H 1.09005 * 109.47088 * 300.00103 * 5 3 2 29 29 H 1.08999 * 109.47638 * 59.99941 * 5 3 2 30 30 H 1.09005 * 109.47106 * 180.02562 * 5 3 2 31 31 H 1.09010 * 109.47074 * 60.00375 * 11 10 9 32 32 H 1.08999 * 109.47187 * 179.97438 * 11 10 9 33 33 H 1.08996 * 109.47698 * 300.00338 * 11 10 9 34 34 H 1.08999 * 109.47814 * 300.00179 * 14 12 10 35 35 H 1.08999 * 109.47156 * 60.00604 * 14 12 10 36 36 H 1.09008 * 109.47081 * 179.97438 * 14 12 10 37 37 H 0.97000 * 120.00328 * 180.02562 * 18 17 15 38 38 H 1.09003 * 109.47362 * 270.19764 * 24 23 9 39 39 H 1.09000 * 109.47568 * 30.19802 * 24 23 9 40 40 H 1.09003 * 109.47257 * 150.20209 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7294 2.2542 0.8418 5 6 1.7428 2.4016 -1.3073 6 6 3.7142 1.9386 0.1238 7 7 4.6245 1.2749 -0.5307 8 7 5.7959 1.6727 -0.1822 9 6 5.6949 2.6190 0.7212 10 7 6.7424 3.2900 1.3321 11 6 6.6604 3.1740 2.7942 12 6 8.0379 2.8053 0.8374 13 1 8.1331 1.7406 1.0506 14 6 8.1243 3.0325 -0.6732 15 6 9.1503 3.5559 1.5232 16 1 8.9180 4.3171 2.2533 17 6 10.4643 3.2715 1.2179 18 7 10.7471 2.3448 0.3285 19 14 11.8431 4.2023 2.0676 20 1 11.7594 3.9813 3.5337 21 1 13.1527 3.7122 1.5675 22 1 11.7133 5.6528 1.7773 23 7 4.3636 2.8222 0.9407 24 6 3.7561 3.7852 1.8625 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8900 28 1 2.2354 1.9150 -2.1492 29 1 0.6635 2.2779 -1.3969 30 1 1.9884 3.4636 -1.3075 31 1 6.7057 2.1225 3.0784 32 1 7.4944 3.7089 3.2484 33 1 5.7206 3.6038 3.1407 34 1 7.3198 2.4894 -1.1690 35 1 8.0292 4.0972 -0.8865 36 1 9.0858 2.6733 -1.0403 37 1 11.6716 2.1444 0.1140 38 1 3.6241 3.3198 2.8393 39 1 4.4057 4.6551 1.9593 40 1 2.7863 4.0973 1.4748 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262888894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:48 Heat of formation + Delta-G solvation = 102.533104 kcal Electronic energy + Delta-G solvation = -20997.219782 eV Core-core repulsion = 17975.899790 eV Total energy + Delta-G solvation = -3021.319992 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.54007 -37.22506 -34.97751 -33.92758 -32.64983 -29.44215 -29.23870 -28.50987 -27.49922 -25.51298 -24.38781 -24.02531 -21.83861 -20.45703 -19.55915 -16.90840 -16.62368 -16.24285 -15.97966 -15.23425 -15.11334 -14.52582 -14.33945 -13.99798 -13.85877 -13.48002 -13.42741 -13.00810 -12.93398 -12.74666 -12.31882 -11.97187 -11.86804 -11.77448 -11.20468 -10.99659 -10.89897 -10.53157 -10.47082 -10.20489 -10.04563 -9.97615 -9.85673 -9.56463 -9.37077 -8.63918 -8.44324 -7.75625 -7.37423 -6.03896 -4.12530 1.27914 2.24081 2.44376 2.67092 3.29208 3.34717 3.35892 3.41227 4.21266 4.31897 4.55127 4.60090 4.71517 4.81129 4.90152 4.93595 5.08272 5.27070 5.31818 5.33727 5.42569 5.53474 5.59898 5.74446 5.95330 5.98304 6.11353 6.30771 6.45007 6.83625 7.01950 7.17568 7.38379 7.45818 7.68962 7.73335 7.98124 8.29301 8.43631 8.88415 9.34978 9.52028 11.02045 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.037628 B = 0.003962 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.938625 B = 7065.601386 C = 7348.759735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.201 6.201 3 C 0.038 3.962 4 H 0.095 0.905 5 C -0.143 4.143 6 C 0.151 3.849 7 N -0.258 5.258 8 N -0.312 5.312 9 C 0.393 3.607 10 N -0.453 5.453 11 C 0.033 3.967 12 C 0.231 3.769 13 H 0.022 0.978 14 C -0.144 4.144 15 C -0.521 4.521 16 H 0.064 0.936 17 C 0.065 3.935 18 N -0.882 5.882 19 Si 0.900 3.100 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.276 1.276 23 N -0.489 5.489 24 C 0.078 3.922 25 H 0.102 0.898 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.030 0.970 32 H 0.099 0.901 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.022 0.978 36 H 0.087 0.913 37 H 0.264 0.736 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.486 1.631 2.876 20.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.025 5.975 3 C -0.093 4.093 4 H 0.113 0.887 5 C -0.202 4.202 6 C -0.117 4.117 7 N -0.098 5.098 8 N -0.158 5.158 9 C 0.037 3.963 10 N -0.177 5.177 11 C -0.115 4.115 12 C 0.127 3.873 13 H 0.039 0.961 14 C -0.202 4.202 15 C -0.559 4.559 16 H 0.082 0.918 17 C -0.138 4.138 18 N -0.519 5.519 19 Si 0.728 3.272 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.202 1.202 23 N -0.187 5.187 24 C -0.065 4.065 25 H 0.121 0.879 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.118 0.882 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.042 0.958 36 H 0.105 0.895 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.004 0.187 1.749 19.085 hybrid contribution -0.564 1.956 1.612 2.597 sum -19.569 2.143 3.361 19.971 Atomic orbital electron populations 1.23522 0.95878 1.06529 1.04702 1.87586 1.04668 1.07435 1.97792 1.21077 0.89287 0.96751 1.02194 0.88696 1.22096 1.00997 1.01131 0.96016 1.23202 0.95094 0.95969 0.97448 1.73999 0.94863 1.20590 1.20331 1.74909 1.14001 1.10820 1.16049 1.23319 0.82542 0.92777 0.97621 1.59084 1.02681 1.50242 1.05701 1.22444 1.02373 1.00725 0.85936 1.19380 0.79433 0.94847 0.93648 0.96051 1.21979 1.03076 0.98565 0.96572 1.21017 0.89904 1.21206 1.23784 0.91805 1.24897 0.98618 0.95170 0.95119 1.69919 1.19246 1.30931 1.31816 0.86532 0.80999 0.80068 0.79612 1.20269 1.21194 1.20191 1.45954 1.06207 1.31856 1.34724 1.22029 0.99467 0.92548 0.92491 0.87933 0.90378 0.90783 0.90045 0.91706 0.91673 0.95143 0.88248 0.93168 0.93560 0.95849 0.89455 0.92629 0.90691 0.88543 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 10.45 101.05 1.06 0.03 16 2 S -0.20 -2.52 21.63 -107.50 -2.33 -4.85 16 3 C 0.04 0.46 3.10 -27.88 -0.09 0.37 16 4 H 0.09 0.89 7.29 -51.92 -0.38 0.51 16 5 C -0.14 -1.45 9.08 37.16 0.34 -1.11 16 6 C 0.15 2.54 6.68 -154.02 -1.03 1.51 16 7 N -0.26 -5.46 11.98 32.99 0.40 -5.07 16 8 N -0.31 -7.39 9.00 30.32 0.27 -7.12 16 9 C 0.39 8.33 6.75 -318.87 -2.15 6.17 16 10 N -0.45 -9.94 4.69 -176.08 -0.83 -10.76 16 11 C 0.03 0.60 9.09 60.06 0.55 1.14 16 12 C 0.23 6.01 1.73 -68.86 -0.12 5.89 16 13 H 0.02 0.64 8.11 -51.93 -0.42 0.22 16 14 C -0.14 -3.81 8.77 37.16 0.33 -3.49 16 15 C -0.52 -13.98 7.88 -34.44 -0.27 -14.25 16 16 H 0.06 1.64 6.40 -52.48 -0.34 1.31 16 17 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 18 N -0.88 -25.35 11.32 55.43 0.63 -24.72 16 19 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 N -0.49 -8.13 3.21 -121.46 -0.39 -8.52 16 24 C 0.08 0.86 9.14 59.85 0.55 1.40 16 25 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 26 H 0.08 0.49 7.14 -51.92 -0.37 0.12 16 27 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.48 6.92 -51.93 -0.36 0.12 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.03 0.58 8.14 -51.92 -0.42 0.15 16 32 H 0.10 1.87 6.10 -51.93 -0.32 1.55 16 33 H 0.05 0.72 5.44 -51.93 -0.28 0.44 16 34 H 0.05 1.21 5.43 -51.93 -0.28 0.93 16 35 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.09 2.50 6.07 -51.92 -0.32 2.18 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.07 0.69 7.84 -51.93 -0.41 0.29 16 39 H 0.10 1.07 7.60 -51.93 -0.39 0.67 16 40 H 0.08 0.65 7.52 -51.93 -0.39 0.26 16 LS Contribution 329.70 15.07 4.97 4.97 Total: -1.00 -32.91 329.70 -9.16 -42.08 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -5.93 Total: -1.23 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -0.94 Total: -0.65 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: 0.08 Total: -56.19 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -2.52 SS G_CDS: -2.33 Total: -4.85 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.91 -9.16 -42.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262888894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.612 kcal (2) G-P(sol) polarization free energy of solvation -32.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds