Wall clock time and date at job start Tue Mar 31 2020 06:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81401 * 102.99894 * 2 1 4 4 H 1.09001 * 109.47254 * 54.99767 * 3 2 1 5 5 C 1.52998 * 109.47253 * 295.00208 * 3 2 1 6 6 C 1.50702 * 109.47075 * 174.99995 * 3 2 1 7 7 N 1.30289 * 126.34690 * 45.02336 * 6 3 2 8 8 N 1.28527 * 110.05434 * 180.02562 * 7 6 3 9 9 C 1.31218 * 109.85842 * 0.02562 * 8 7 6 10 10 N 1.38586 * 126.47132 * 180.02562 * 9 8 7 11 11 C 1.46897 * 110.99815 * 236.02108 * 10 9 8 12 12 C 1.46902 * 111.00187 * 359.97438 * 10 9 8 13 13 H 1.09001 * 109.47269 * 300.00365 * 12 10 9 14 14 C 1.52998 * 109.46811 * 59.99915 * 12 10 9 15 15 C 1.50699 * 109.47312 * 180.02562 * 12 10 9 16 16 H 1.08005 * 119.99826 * 359.97438 * 15 12 10 17 17 C 1.37872 * 120.00057 * 180.02562 * 15 12 10 18 18 N 1.31519 * 120.00137 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 119.99971 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.46928 * 59.99984 * 19 17 15 21 21 H 1.48505 * 109.46886 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47261 * 299.99579 * 19 17 15 23 23 N 1.36453 * 107.05267 * 359.73639 * 9 8 7 24 24 C 1.46499 * 127.13337 * 180.26158 * 23 9 8 25 25 H 1.09002 * 109.47124 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46975 * 59.99980 * 1 2 3 27 27 H 1.09004 * 109.47147 * 299.99944 * 1 2 3 28 28 H 1.09005 * 109.47088 * 300.00103 * 5 3 2 29 29 H 1.08999 * 109.47638 * 59.99941 * 5 3 2 30 30 H 1.09005 * 109.47106 * 180.02562 * 5 3 2 31 31 H 1.09010 * 109.47074 * 60.00375 * 11 10 9 32 32 H 1.08999 * 109.47187 * 179.97438 * 11 10 9 33 33 H 1.08996 * 109.47698 * 300.00338 * 11 10 9 34 34 H 1.08999 * 109.47814 * 300.00179 * 14 12 10 35 35 H 1.08999 * 109.47156 * 60.00604 * 14 12 10 36 36 H 1.09008 * 109.47081 * 179.97438 * 14 12 10 37 37 H 0.97000 * 120.00328 * 180.02562 * 18 17 15 38 38 H 1.09003 * 109.47362 * 270.19764 * 24 23 9 39 39 H 1.09000 * 109.47568 * 30.19802 * 24 23 9 40 40 H 1.09003 * 109.47257 * 150.20209 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7294 2.2542 0.8418 5 6 1.7428 2.4016 -1.3073 6 6 3.7142 1.9386 0.1238 7 7 4.6245 1.2749 -0.5307 8 7 5.7959 1.6727 -0.1822 9 6 5.6949 2.6190 0.7212 10 7 6.7424 3.2900 1.3321 11 6 6.6604 3.1740 2.7942 12 6 8.0379 2.8053 0.8374 13 1 8.1331 1.7406 1.0506 14 6 8.1243 3.0325 -0.6732 15 6 9.1503 3.5559 1.5232 16 1 8.9180 4.3171 2.2533 17 6 10.4643 3.2715 1.2179 18 7 10.7471 2.3448 0.3285 19 14 11.8431 4.2023 2.0676 20 1 11.7594 3.9813 3.5337 21 1 13.1527 3.7122 1.5675 22 1 11.7133 5.6528 1.7773 23 7 4.3636 2.8222 0.9407 24 6 3.7561 3.7852 1.8625 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8900 28 1 2.2354 1.9150 -2.1492 29 1 0.6635 2.2779 -1.3969 30 1 1.9884 3.4636 -1.3075 31 1 6.7057 2.1225 3.0784 32 1 7.4944 3.7089 3.2484 33 1 5.7206 3.6038 3.1407 34 1 7.3198 2.4894 -1.1690 35 1 8.0292 4.0972 -0.8865 36 1 9.0858 2.6733 -1.0403 37 1 11.6716 2.1444 0.1140 38 1 3.6241 3.3198 2.8393 39 1 4.4057 4.6551 1.9593 40 1 2.7863 4.0973 1.4748 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262888894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:48 Heat of formation + Delta-G solvation = 82.493527 kcal Electronic energy + Delta-G solvation = -20998.088763 eV Core-core repulsion = 17975.899790 eV Total energy + Delta-G solvation = -3022.188973 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.99765 -38.95961 -36.26148 -35.29050 -34.37134 -31.21227 -30.58149 -29.43999 -28.58202 -27.35705 -26.05040 -25.20232 -23.60067 -21.73576 -21.26211 -18.56142 -18.02583 -17.53169 -17.49260 -16.79073 -16.59437 -15.97389 -15.62905 -15.19572 -14.98602 -14.61690 -14.54857 -14.22016 -14.00381 -13.79508 -13.58136 -13.46465 -12.99774 -12.84055 -12.82562 -12.70340 -12.61846 -12.26472 -12.18188 -12.07993 -12.02313 -11.53122 -11.09965 -11.02279 -10.76454 -10.56282 -10.46930 -9.06207 -8.69619 -8.12666 -6.29353 0.30225 0.95868 1.37000 1.45929 1.48048 1.55827 1.64329 1.93606 2.41475 2.92377 3.16680 3.20450 3.64578 3.79744 3.91717 4.08900 4.28179 4.32499 4.41356 4.42957 4.45634 4.53318 4.61064 4.69699 4.74696 4.82181 4.88591 4.95105 4.98236 5.14816 5.18354 5.30448 5.39776 5.52741 5.64438 5.92363 5.97664 6.15657 6.55219 6.80262 7.39713 7.85149 8.93871 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.037628 B = 0.003962 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.938625 B = 7065.601386 C = 7348.759735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.283 6.283 3 C 0.048 3.952 4 H 0.134 0.866 5 C -0.138 4.138 6 C 0.178 3.822 7 N -0.308 5.308 8 N -0.366 5.366 9 C 0.371 3.629 10 N -0.453 5.453 11 C 0.034 3.966 12 C 0.243 3.757 13 H -0.027 1.027 14 C -0.128 4.128 15 C -0.531 4.531 16 H 0.077 0.923 17 C 0.011 3.989 18 N -0.919 5.919 19 Si 0.972 3.028 20 H -0.264 1.264 21 H -0.288 1.288 22 H -0.267 1.267 23 N -0.480 5.480 24 C 0.062 3.938 25 H 0.111 0.889 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.053 0.947 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.014 0.986 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.043 0.957 35 H 0.021 0.979 36 H 0.060 0.940 37 H 0.263 0.737 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.589 3.718 4.660 24.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.058 6.058 3 C -0.083 4.083 4 H 0.152 0.848 5 C -0.197 4.197 6 C -0.092 4.092 7 N -0.147 5.147 8 N -0.211 5.211 9 C 0.013 3.987 10 N -0.177 5.177 11 C -0.113 4.113 12 C 0.137 3.863 13 H -0.009 1.009 14 C -0.186 4.186 15 C -0.569 4.569 16 H 0.095 0.905 17 C -0.188 4.188 18 N -0.558 5.558 19 Si 0.797 3.203 20 H -0.189 1.189 21 H -0.214 1.214 22 H -0.192 1.192 23 N -0.176 5.176 24 C -0.079 4.079 25 H 0.130 0.870 26 H 0.113 0.887 27 H 0.114 0.886 28 H 0.073 0.927 29 H 0.119 0.881 30 H 0.091 0.909 31 H 0.033 0.967 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.062 0.938 35 H 0.040 0.960 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -22.155 2.293 3.555 22.556 hybrid contribution 0.161 1.238 1.051 1.632 sum -21.994 3.531 4.606 22.747 Atomic orbital electron populations 1.23571 0.90278 1.07755 1.06574 1.87932 1.10828 1.09009 1.98061 1.21340 0.85847 0.96387 1.04710 0.84829 1.22078 1.02938 1.00913 0.93812 1.24168 0.96834 0.93438 0.94765 1.73896 0.94999 1.22878 1.22943 1.74727 1.16113 1.12593 1.17629 1.23162 0.84168 0.93297 0.98025 1.59003 1.01218 1.50109 1.07341 1.22545 1.04682 1.00061 0.84012 1.18949 0.82010 0.92129 0.93167 1.00922 1.21772 1.01416 0.97942 0.97500 1.21350 0.90353 1.21262 1.23924 0.90549 1.25844 1.01350 0.95946 0.95690 1.70094 1.19644 1.32622 1.33405 0.85398 0.77274 0.78776 0.78893 1.18909 1.21378 1.19240 1.46180 1.04399 1.32183 1.34884 1.22559 1.01006 0.91542 0.92755 0.87044 0.88660 0.88627 0.92741 0.88082 0.90872 0.96733 0.88714 0.88515 0.93838 0.96014 0.92108 0.92769 0.88284 0.88366 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.45 113.37 1.19 -0.06 16 2 S -0.28 -6.69 21.63 -56.49 -1.22 -7.91 16 3 C 0.05 1.01 3.10 29.85 0.09 1.10 16 4 H 0.13 1.79 7.29 -2.39 -0.02 1.77 16 5 C -0.14 -2.38 9.08 71.98 0.65 -1.72 16 6 C 0.18 5.80 6.68 137.64 0.92 6.72 16 7 N -0.31 -13.51 11.98 -49.54 -0.59 -14.10 16 8 N -0.37 -18.19 9.00 -58.00 -0.52 -18.71 16 9 C 0.37 15.98 6.75 260.11 1.76 17.73 16 10 N -0.45 -20.14 4.69 -710.99 -3.33 -23.48 16 11 C 0.03 1.21 9.09 127.69 1.16 2.37 16 12 C 0.24 13.25 1.73 44.17 0.08 13.33 16 13 H -0.03 -1.70 8.11 -2.39 -0.02 -1.71 16 14 C -0.13 -7.17 8.77 71.98 0.63 -6.54 16 15 C -0.53 -29.04 7.88 25.60 0.20 -28.84 16 16 H 0.08 3.90 6.40 -2.91 -0.02 3.88 16 17 C 0.01 0.63 5.30 84.65 0.45 1.07 16 18 N -0.92 -54.96 11.32 21.45 0.24 -54.72 16 19 Si 0.97 43.10 29.54 68.60 2.03 45.12 16 20 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 21 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 23 N -0.48 -15.15 3.21 -538.18 -1.73 -16.88 16 24 C 0.06 1.10 9.14 127.77 1.17 2.27 16 25 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.09 0.75 7.14 -2.39 -0.02 0.74 16 27 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.10 1.03 6.92 -2.39 -0.02 1.01 16 30 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.09 3.49 6.10 -2.39 -0.01 3.47 16 33 H 0.10 2.52 5.44 -2.39 -0.01 2.51 16 34 H 0.04 2.44 5.43 -2.39 -0.01 2.42 16 35 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.06 3.69 6.07 -2.38 -0.01 3.68 16 37 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 38 H 0.10 1.34 7.84 -2.39 -0.02 1.32 16 39 H 0.10 1.79 7.60 -2.39 -0.02 1.77 16 40 H 0.12 1.22 7.52 -2.39 -0.02 1.20 16 Total: -1.00 -78.59 329.70 4.20 -74.39 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 1.03 Total: 8.86 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 8.29 Total: 7.44 kcal Atomic # 7 Polarization: -121.96 SS G_CDS: -5.93 Total: -127.89 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: -6.69 SS G_CDS: -1.22 Total: -7.91 kcal Total: -78.59 4.20 -74.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262888894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.880 kcal (2) G-P(sol) polarization free energy of solvation -78.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds