Wall clock time and date at job start Tue Mar 31 2020 06:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81399 * 103.00023 * 2 1 4 4 H 1.09000 * 109.47234 * 304.99883 * 3 2 1 5 5 C 1.53006 * 109.47004 * 64.99792 * 3 2 1 6 6 C 1.50697 * 109.46831 * 184.99685 * 3 2 1 7 7 N 1.30295 * 126.35104 * 314.68664 * 6 3 2 8 8 N 1.28525 * 110.05517 * 179.82210 * 7 6 3 9 9 C 1.31224 * 109.85898 * 0.45570 * 8 7 6 10 10 N 1.38578 * 126.47214 * 179.72823 * 9 8 7 11 11 C 1.46896 * 111.00370 * 236.04448 * 10 9 8 12 12 C 1.46899 * 111.00006 * 0.02562 * 10 9 8 13 13 H 1.09007 * 109.46710 * 299.99562 * 12 10 9 14 14 C 1.52994 * 109.47792 * 59.99800 * 12 10 9 15 15 C 1.50709 * 109.47276 * 180.02562 * 12 10 9 16 16 H 1.08003 * 119.99534 * 359.97438 * 15 12 10 17 17 C 1.37874 * 119.99874 * 179.97438 * 15 12 10 18 18 N 1.31520 * 119.99290 * 179.97438 * 17 15 12 19 19 Si 1.86795 * 120.00207 * 0.02562 * 17 15 12 20 20 H 1.48500 * 109.47298 * 89.99938 * 19 17 15 21 21 H 1.48500 * 109.46851 * 209.99625 * 19 17 15 22 22 H 1.48497 * 109.47092 * 329.99595 * 19 17 15 23 23 N 1.36443 * 107.05481 * 359.72702 * 9 8 7 24 24 C 1.46498 * 127.13966 * 179.97438 * 23 9 8 25 25 H 1.09001 * 109.46640 * 59.99713 * 1 2 3 26 26 H 1.09000 * 109.47136 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47176 * 300.00578 * 1 2 3 28 28 H 1.09001 * 109.47002 * 179.97438 * 5 3 2 29 29 H 1.08993 * 109.46955 * 300.00150 * 5 3 2 30 30 H 1.09000 * 109.47050 * 59.99979 * 5 3 2 31 31 H 1.09000 * 109.46998 * 59.99991 * 11 10 9 32 32 H 1.08990 * 109.47527 * 179.97438 * 11 10 9 33 33 H 1.09006 * 109.46938 * 300.00309 * 11 10 9 34 34 H 1.08999 * 109.47010 * 59.99872 * 14 12 10 35 35 H 1.08998 * 109.47566 * 179.97438 * 14 12 10 36 36 H 1.09002 * 109.46794 * 300.00410 * 14 12 10 37 37 H 0.97006 * 119.99555 * 179.97438 * 18 17 15 38 38 H 1.08999 * 109.47685 * 269.97748 * 24 23 9 39 39 H 1.09002 * 109.47061 * 29.97887 * 24 23 9 40 40 H 1.09007 * 109.47128 * 149.97553 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7428 2.4016 1.3074 6 6 3.7142 1.9385 -0.1238 7 7 4.6245 1.2784 0.5346 8 7 5.7960 1.6727 0.1826 9 6 5.6950 2.6201 -0.7198 10 7 6.7424 3.2914 -1.3302 11 6 6.6178 4.7430 -1.1431 12 6 8.0379 2.8058 -0.8363 13 1 8.0998 2.9665 0.2401 14 6 8.1711 1.3117 -1.1373 15 6 9.1504 3.5577 -1.5207 16 1 8.9181 4.3197 -2.2500 17 6 10.4644 3.2727 -1.2159 18 7 11.4352 3.9286 -1.8136 19 14 10.8660 1.9542 0.0449 20 1 10.9992 0.6416 -0.6368 21 1 12.1430 2.2911 0.7238 22 1 9.7751 1.8816 1.0499 23 7 4.3638 2.8194 -0.9435 24 6 3.7564 3.7785 -1.8695 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.9884 3.4635 1.3076 29 1 0.6636 2.2778 1.3969 30 1 2.2353 1.9149 2.1492 31 1 6.6280 4.9742 -0.0779 32 1 7.4526 5.2454 -1.6315 33 1 5.6803 5.0865 -1.5805 34 1 8.1092 1.1509 -2.2136 35 1 9.1325 0.9515 -0.7712 36 1 7.3665 0.7682 -0.6420 37 1 12.3597 3.7283 -1.5988 38 1 3.5860 4.7235 -1.3537 39 1 4.4254 3.9412 -2.7145 40 1 2.8059 3.3842 -2.2292 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262888895.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:52 Heat of formation + Delta-G solvation = 110.423552 kcal Electronic energy + Delta-G solvation = -21084.745610 eV Core-core repulsion = 18063.767773 eV Total energy + Delta-G solvation = -3020.977836 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.70088 -37.48536 -35.10847 -34.03062 -32.60566 -30.19726 -29.53188 -28.63178 -27.60807 -25.56718 -24.50279 -24.14866 -22.01049 -20.57920 -19.59025 -17.21774 -16.73936 -16.55225 -16.10786 -15.38316 -15.15803 -14.70114 -14.47364 -14.07860 -13.93750 -13.59633 -13.42115 -13.17863 -13.00577 -12.83640 -12.65398 -12.20340 -11.95574 -11.91820 -11.76622 -11.17459 -10.95814 -10.77001 -10.60245 -10.27842 -10.15149 -9.97774 -9.90933 -9.50382 -9.39793 -8.82840 -8.60551 -7.82505 -7.57842 -6.14161 -4.15784 1.20032 2.10776 2.35288 2.55239 3.23464 3.32732 3.42275 3.49299 4.09609 4.30031 4.39545 4.48931 4.60854 4.73845 4.84795 4.88389 5.00611 5.19564 5.24409 5.27912 5.33935 5.43611 5.48333 5.60885 5.85153 5.86862 5.98636 6.13935 6.39503 6.51292 6.62102 6.63721 6.89775 7.00911 7.22857 7.46275 7.60088 7.86339 8.47662 8.84610 9.16814 9.46491 10.97284 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.031297 B = 0.004437 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.445770 B = 6308.829671 C = 6829.433344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.201 6.201 3 C 0.036 3.964 4 H 0.096 0.904 5 C -0.142 4.142 6 C 0.156 3.844 7 N -0.258 5.258 8 N -0.321 5.321 9 C 0.390 3.610 10 N -0.442 5.442 11 C 0.031 3.969 12 C 0.201 3.799 13 H 0.021 0.979 14 C -0.157 4.157 15 C -0.520 4.520 16 H 0.085 0.915 17 C 0.078 3.922 18 N -0.895 5.895 19 Si 0.883 3.117 20 H -0.276 1.276 21 H -0.296 1.296 22 H -0.261 1.261 23 N -0.486 5.486 24 C 0.077 3.923 25 H 0.074 0.926 26 H 0.103 0.897 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.031 0.969 32 H 0.106 0.894 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.044 0.956 36 H 0.065 0.935 37 H 0.266 0.734 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.026 -0.295 1.858 23.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.025 5.975 3 C -0.095 4.095 4 H 0.114 0.886 5 C -0.202 4.202 6 C -0.112 4.112 7 N -0.097 5.097 8 N -0.167 5.167 9 C 0.035 3.965 10 N -0.165 5.165 11 C -0.116 4.116 12 C 0.096 3.904 13 H 0.039 0.961 14 C -0.215 4.215 15 C -0.558 4.558 16 H 0.102 0.898 17 C -0.125 4.125 18 N -0.532 5.532 19 Si 0.713 3.287 20 H -0.202 1.202 21 H -0.224 1.224 22 H -0.186 1.186 23 N -0.184 5.184 24 C -0.067 4.067 25 H 0.093 0.907 26 H 0.121 0.879 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.050 0.950 32 H 0.125 0.875 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.117 0.883 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -21.505 -2.183 2.256 21.733 hybrid contribution -0.983 1.450 0.133 1.757 sum -22.488 -0.733 2.389 22.626 Atomic orbital electron populations 1.23525 0.95725 1.06595 1.04750 1.87593 1.04845 1.07246 1.97795 1.21107 0.89130 0.96918 1.02316 0.88555 1.22087 1.01111 1.01069 0.95897 1.23251 0.95150 0.95727 0.97054 1.73977 0.94692 1.20881 1.20184 1.74805 1.14483 1.14747 1.12667 1.23275 0.82579 0.97353 0.93308 1.58815 1.01167 1.04779 1.51779 1.22509 1.03030 0.85602 1.00442 1.19773 0.82566 0.93213 0.94895 0.96133 1.22326 1.00505 0.97386 1.01260 1.20870 0.88650 1.21310 1.24950 0.89750 1.24812 0.95990 0.95958 0.95705 1.69865 0.99704 1.41372 1.42255 0.86903 0.77471 0.82006 0.82354 1.20237 1.22408 1.18581 1.45910 1.06072 1.31807 1.34581 1.22080 0.99697 0.91514 0.93369 0.90718 0.87881 0.90355 0.91691 0.91612 0.90096 0.95031 0.87536 0.92791 0.93055 0.93744 0.91670 0.92372 0.90514 0.88337 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 10.45 101.05 1.06 0.11 16 2 S -0.20 -2.39 21.64 -107.50 -2.33 -4.72 16 3 C 0.04 0.41 3.18 -27.88 -0.09 0.32 16 4 H 0.10 0.83 6.96 -51.92 -0.36 0.47 16 5 C -0.14 -1.31 9.08 37.16 0.34 -0.98 16 6 C 0.16 2.47 6.68 -154.01 -1.03 1.44 16 7 N -0.26 -5.14 11.99 32.99 0.40 -4.74 16 8 N -0.32 -7.13 9.00 30.31 0.27 -6.86 16 9 C 0.39 7.80 6.76 -318.88 -2.15 5.65 16 10 N -0.44 -9.27 4.69 -176.09 -0.83 -10.10 16 11 C 0.03 0.55 9.08 60.06 0.55 1.10 16 12 C 0.20 4.94 1.32 -68.86 -0.09 4.85 16 13 H 0.02 0.55 7.17 -51.92 -0.37 0.18 16 14 C -0.16 -3.84 8.48 37.15 0.31 -3.52 16 15 C -0.52 -14.21 8.46 -34.44 -0.29 -14.50 16 16 H 0.08 2.41 6.65 -52.48 -0.35 2.06 16 17 C 0.08 2.23 5.45 -17.82 -0.10 2.14 16 18 N -0.89 -26.73 13.96 55.43 0.77 -25.96 16 19 Si 0.88 22.46 24.37 -169.99 -4.14 18.32 16 20 H -0.28 -6.91 6.87 56.52 0.39 -6.52 16 21 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 22 H -0.26 -6.62 6.53 56.52 0.37 -6.25 16 23 N -0.49 -7.59 3.21 -121.46 -0.39 -7.98 16 24 C 0.08 0.78 9.29 59.85 0.56 1.34 16 25 H 0.07 0.43 8.14 -51.92 -0.42 0.00 16 26 H 0.10 0.63 8.14 -51.92 -0.42 0.20 16 27 H 0.08 0.45 7.14 -51.92 -0.37 0.08 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.44 6.92 -51.93 -0.36 0.08 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.11 2.03 6.10 -51.93 -0.32 1.71 16 33 H 0.05 0.73 5.40 -51.93 -0.28 0.45 16 34 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.04 1.11 3.27 -51.93 -0.17 0.94 16 36 H 0.06 1.57 5.43 -51.93 -0.28 1.29 16 37 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.08 0.63 7.85 -51.93 -0.41 0.22 16 39 H 0.10 1.04 7.57 -51.93 -0.39 0.64 16 40 H 0.08 0.62 7.11 -51.93 -0.37 0.25 16 LS Contribution 322.32 15.07 4.86 4.86 Total: -1.00 -33.69 322.32 -8.07 -41.76 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -5.75 Total: -2.51 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -0.94 Total: -2.07 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.23 Total: -55.64 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.14 Total: 18.32 kcal Atomic # 16 Polarization: -2.39 SS G_CDS: -2.33 Total: -4.72 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.69 -8.07 -41.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262888895.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.183 kcal (2) G-P(sol) polarization free energy of solvation -33.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds