Wall clock time and date at job start Tue Mar 31 2020 06:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81399 * 103.00023 * 2 1 4 4 H 1.09000 * 109.47234 * 304.99883 * 3 2 1 5 5 C 1.53006 * 109.47004 * 64.99792 * 3 2 1 6 6 C 1.50697 * 109.46831 * 184.99685 * 3 2 1 7 7 N 1.30295 * 126.35104 * 314.68664 * 6 3 2 8 8 N 1.28525 * 110.05517 * 179.82210 * 7 6 3 9 9 C 1.31224 * 109.85898 * 0.45570 * 8 7 6 10 10 N 1.38578 * 126.47214 * 179.72823 * 9 8 7 11 11 C 1.46896 * 111.00370 * 236.04448 * 10 9 8 12 12 C 1.46899 * 111.00006 * 0.02562 * 10 9 8 13 13 H 1.09007 * 109.46710 * 299.99562 * 12 10 9 14 14 C 1.52994 * 109.47792 * 59.99800 * 12 10 9 15 15 C 1.50709 * 109.47276 * 180.02562 * 12 10 9 16 16 H 1.08003 * 119.99534 * 359.97438 * 15 12 10 17 17 C 1.37874 * 119.99874 * 179.97438 * 15 12 10 18 18 N 1.31520 * 119.99290 * 179.97438 * 17 15 12 19 19 Si 1.86795 * 120.00207 * 0.02562 * 17 15 12 20 20 H 1.48500 * 109.47298 * 89.99938 * 19 17 15 21 21 H 1.48500 * 109.46851 * 209.99625 * 19 17 15 22 22 H 1.48497 * 109.47092 * 329.99595 * 19 17 15 23 23 N 1.36443 * 107.05481 * 359.72702 * 9 8 7 24 24 C 1.46498 * 127.13966 * 179.97438 * 23 9 8 25 25 H 1.09001 * 109.46640 * 59.99713 * 1 2 3 26 26 H 1.09000 * 109.47136 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47176 * 300.00578 * 1 2 3 28 28 H 1.09001 * 109.47002 * 179.97438 * 5 3 2 29 29 H 1.08993 * 109.46955 * 300.00150 * 5 3 2 30 30 H 1.09000 * 109.47050 * 59.99979 * 5 3 2 31 31 H 1.09000 * 109.46998 * 59.99991 * 11 10 9 32 32 H 1.08990 * 109.47527 * 179.97438 * 11 10 9 33 33 H 1.09006 * 109.46938 * 300.00309 * 11 10 9 34 34 H 1.08999 * 109.47010 * 59.99872 * 14 12 10 35 35 H 1.08998 * 109.47566 * 179.97438 * 14 12 10 36 36 H 1.09002 * 109.46794 * 300.00410 * 14 12 10 37 37 H 0.97006 * 119.99555 * 179.97438 * 18 17 15 38 38 H 1.08999 * 109.47685 * 269.97748 * 24 23 9 39 39 H 1.09002 * 109.47061 * 29.97887 * 24 23 9 40 40 H 1.09007 * 109.47128 * 149.97553 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7428 2.4016 1.3074 6 6 3.7142 1.9385 -0.1238 7 7 4.6245 1.2784 0.5346 8 7 5.7960 1.6727 0.1826 9 6 5.6950 2.6201 -0.7198 10 7 6.7424 3.2914 -1.3302 11 6 6.6178 4.7430 -1.1431 12 6 8.0379 2.8058 -0.8363 13 1 8.0998 2.9665 0.2401 14 6 8.1711 1.3117 -1.1373 15 6 9.1504 3.5577 -1.5207 16 1 8.9181 4.3197 -2.2500 17 6 10.4644 3.2727 -1.2159 18 7 11.4352 3.9286 -1.8136 19 14 10.8660 1.9542 0.0449 20 1 10.9992 0.6416 -0.6368 21 1 12.1430 2.2911 0.7238 22 1 9.7751 1.8816 1.0499 23 7 4.3638 2.8194 -0.9435 24 6 3.7564 3.7785 -1.8695 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.9884 3.4635 1.3076 29 1 0.6636 2.2778 1.3969 30 1 2.2353 1.9149 2.1492 31 1 6.6280 4.9742 -0.0779 32 1 7.4526 5.2454 -1.6315 33 1 5.6803 5.0865 -1.5805 34 1 8.1092 1.1509 -2.2136 35 1 9.1325 0.9515 -0.7712 36 1 7.3665 0.7682 -0.6420 37 1 12.3597 3.7283 -1.5988 38 1 3.5860 4.7235 -1.3537 39 1 4.4254 3.9412 -2.7145 40 1 2.8059 3.3842 -2.2292 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262888895.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:51 Heat of formation + Delta-G solvation = 88.713141 kcal Electronic energy + Delta-G solvation = -21085.687044 eV Core-core repulsion = 18063.767773 eV Total energy + Delta-G solvation = -3021.919270 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.05839 -39.15224 -36.30312 -35.29126 -34.42357 -32.09745 -30.62183 -29.46517 -28.61266 -27.30400 -26.17674 -25.22438 -23.67494 -21.77540 -21.22708 -19.04430 -18.11215 -17.76342 -17.30445 -16.86734 -16.79886 -16.02352 -15.78864 -15.23193 -15.09154 -14.73325 -14.59107 -14.37280 -14.10403 -13.97366 -13.82222 -13.59460 -13.43225 -12.93879 -12.91484 -12.70770 -12.64456 -12.41552 -12.25733 -12.18020 -11.69141 -11.51919 -11.23369 -11.06276 -10.80939 -10.78880 -10.55619 -9.13952 -8.69590 -8.35767 -6.39338 0.29313 0.88243 1.27884 1.33855 1.36695 1.44927 1.62179 1.86666 2.27238 2.77398 3.00388 3.14557 3.64134 3.73147 3.90567 3.99479 4.20419 4.31248 4.39323 4.40774 4.42415 4.49118 4.51550 4.61048 4.65112 4.66105 4.70716 4.84187 4.94034 4.98015 5.00923 5.06001 5.18599 5.32318 5.43953 5.62354 5.78815 6.11619 6.47710 6.64027 7.25279 7.77807 8.78726 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.031297 B = 0.004437 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.445770 B = 6308.829671 C = 6829.433344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.282 6.282 3 C 0.046 3.954 4 H 0.133 0.867 5 C -0.137 4.137 6 C 0.181 3.819 7 N -0.304 5.304 8 N -0.366 5.366 9 C 0.370 3.630 10 N -0.447 5.447 11 C 0.033 3.967 12 C 0.211 3.789 13 H 0.000 1.000 14 C -0.149 4.149 15 C -0.513 4.513 16 H 0.065 0.935 17 C 0.034 3.966 18 N -0.932 5.932 19 Si 0.931 3.069 20 H -0.269 1.269 21 H -0.290 1.290 22 H -0.264 1.264 23 N -0.477 5.477 24 C 0.061 3.939 25 H 0.094 0.906 26 H 0.111 0.889 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.025 0.975 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.048 0.952 35 H 0.036 0.964 36 H 0.067 0.933 37 H 0.269 0.731 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.716 0.141 1.683 26.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.057 6.057 3 C -0.084 4.084 4 H 0.151 0.849 5 C -0.196 4.196 6 C -0.088 4.088 7 N -0.143 5.143 8 N -0.211 5.211 9 C 0.013 3.987 10 N -0.170 5.170 11 C -0.113 4.113 12 C 0.104 3.896 13 H 0.017 0.983 14 C -0.207 4.207 15 C -0.551 4.551 16 H 0.083 0.917 17 C -0.166 4.166 18 N -0.572 5.572 19 Si 0.759 3.241 20 H -0.195 1.195 21 H -0.217 1.217 22 H -0.189 1.189 23 N -0.173 5.173 24 C -0.079 4.079 25 H 0.113 0.887 26 H 0.129 0.871 27 H 0.114 0.886 28 H 0.092 0.908 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -25.231 -1.735 2.073 25.376 hybrid contribution -0.077 1.349 0.162 1.361 sum -25.308 -0.386 2.235 25.410 Atomic orbital electron populations 1.23570 0.90363 1.07740 1.06556 1.87921 1.10766 1.08977 1.98061 1.21361 0.85915 0.96389 1.04784 0.84929 1.22066 1.02905 1.00953 0.93715 1.24154 0.96799 0.93361 0.94519 1.73889 0.94836 1.23059 1.22513 1.74630 1.16386 1.15948 1.14138 1.23037 0.83981 0.97657 0.94039 1.58716 1.00089 1.06188 1.52035 1.22562 1.04629 0.83915 1.00226 1.19399 0.84009 0.92974 0.93210 0.98280 1.22220 1.00119 0.97363 1.00950 1.21052 0.89535 1.20587 1.23917 0.91667 1.25427 0.96150 0.97693 0.97303 1.69954 1.00167 1.43051 1.43990 0.86116 0.77230 0.80229 0.80508 1.19520 1.21711 1.18904 1.46134 1.04390 1.32137 1.34634 1.22580 1.00859 0.91837 0.92662 0.88703 0.87086 0.88639 0.90765 0.88260 0.92608 0.95641 0.89456 0.88228 0.93291 0.94558 0.91406 0.92121 0.87697 0.88599 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.45 113.37 1.19 0.07 16 2 S -0.28 -6.17 21.64 -56.49 -1.22 -7.39 16 3 C 0.05 0.88 3.18 29.85 0.09 0.97 16 4 H 0.13 1.56 6.96 -2.39 -0.02 1.54 16 5 C -0.14 -2.06 9.08 71.98 0.65 -1.40 16 6 C 0.18 5.40 6.68 137.64 0.92 6.32 16 7 N -0.30 -12.16 11.99 -49.53 -0.59 -12.75 16 8 N -0.37 -16.45 9.00 -58.01 -0.52 -16.97 16 9 C 0.37 14.63 6.76 260.11 1.76 16.39 16 10 N -0.45 -18.74 4.69 -711.01 -3.33 -22.08 16 11 C 0.03 1.15 9.08 127.69 1.16 2.31 16 12 C 0.21 10.57 1.32 44.17 0.06 10.63 16 13 H 0.00 -0.02 7.17 -2.38 -0.02 -0.04 16 14 C -0.15 -7.39 8.48 71.98 0.61 -6.78 16 15 C -0.51 -28.69 8.46 25.60 0.22 -28.48 16 16 H 0.07 3.84 6.65 -2.91 -0.02 3.82 16 17 C 0.03 1.96 5.45 84.65 0.46 2.42 16 18 N -0.93 -56.78 13.96 21.45 0.30 -56.48 16 19 Si 0.93 47.07 24.37 68.60 1.67 48.74 16 20 H -0.27 -13.21 6.87 99.48 0.68 -12.53 16 21 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 22 H -0.26 -13.40 6.53 99.48 0.65 -12.75 16 23 N -0.48 -13.79 3.21 -538.18 -1.73 -15.51 16 24 C 0.06 0.99 9.29 127.77 1.19 2.18 16 25 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.09 0.64 7.14 -2.39 -0.02 0.62 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.10 0.85 6.92 -2.39 -0.02 0.83 16 30 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.09 3.37 6.10 -2.39 -0.01 3.36 16 33 H 0.10 2.47 5.40 -2.38 -0.01 2.46 16 34 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.04 1.82 3.27 -2.39 -0.01 1.81 16 36 H 0.07 3.35 5.43 -2.39 -0.01 3.34 16 37 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 38 H 0.10 1.17 7.85 -2.39 -0.02 1.15 16 39 H 0.10 1.68 7.57 -2.39 -0.02 1.66 16 40 H 0.12 1.10 7.11 -2.38 -0.02 1.08 16 Total: -1.00 -77.28 322.32 3.84 -73.43 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: 0.96 Total: 4.37 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 8.30 Total: 4.64 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -5.87 Total: -123.79 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.67 Total: 48.74 kcal Atomic # 16 Polarization: -6.17 SS G_CDS: -1.22 Total: -7.39 kcal Total: -77.28 3.84 -73.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262888895.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.147 kcal (2) G-P(sol) polarization free energy of solvation -77.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds