Wall clock time and date at job start Tue Mar 31 2020 06:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.81393 * 102.99885 * 2 1 4 4 H 1.09002 * 109.47440 * 55.00572 * 3 2 1 5 5 C 1.52994 * 109.47631 * 295.00265 * 3 2 1 6 6 C 1.50701 * 109.47259 * 175.00175 * 3 2 1 7 7 N 1.30302 * 126.34566 * 44.95606 * 6 3 2 8 8 N 1.28526 * 110.05397 * 180.02562 * 7 6 3 9 9 C 1.31214 * 109.86062 * 359.74976 * 8 7 6 10 10 N 1.38582 * 126.47636 * 180.25557 * 9 8 7 11 11 C 1.46898 * 111.00284 * 236.21974 * 10 9 8 12 12 C 1.46904 * 110.99611 * 0.16962 * 10 9 8 13 13 H 1.09005 * 109.46774 * 54.99890 * 12 10 9 14 14 C 1.52995 * 109.47171 * 294.99979 * 12 10 9 15 15 C 1.50699 * 109.47016 * 174.99580 * 12 10 9 16 16 H 1.07998 * 120.00089 * 0.02562 * 15 12 10 17 17 C 1.37878 * 120.00213 * 179.97438 * 15 12 10 18 18 N 1.31515 * 119.99525 * 0.02562 * 17 15 12 19 19 Si 1.86792 * 120.00407 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.47168 * 89.99743 * 19 17 15 21 21 H 1.48494 * 109.47478 * 210.00164 * 19 17 15 22 22 H 1.48503 * 109.46888 * 330.00497 * 19 17 15 23 23 N 1.36457 * 107.05515 * 0.39791 * 9 8 7 24 24 C 1.46499 * 127.13801 * 179.87354 * 23 9 8 25 25 H 1.08992 * 109.47198 * 59.99267 * 1 2 3 26 26 H 1.08999 * 109.47290 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46408 * 299.99665 * 1 2 3 28 28 H 1.08998 * 109.47654 * 180.02562 * 5 3 2 29 29 H 1.09007 * 109.47366 * 300.00419 * 5 3 2 30 30 H 1.09004 * 109.47146 * 60.00026 * 5 3 2 31 31 H 1.09001 * 109.47225 * 59.99310 * 11 10 9 32 32 H 1.08999 * 109.46778 * 179.97438 * 11 10 9 33 33 H 1.09001 * 109.46692 * 299.99313 * 11 10 9 34 34 H 1.08996 * 109.47146 * 180.02562 * 14 12 10 35 35 H 1.09005 * 109.47056 * 300.00186 * 14 12 10 36 36 H 1.08996 * 109.47391 * 60.00050 * 14 12 10 37 37 H 0.97005 * 119.99841 * 179.97438 * 18 17 15 38 38 H 1.09002 * 109.47391 * 269.71037 * 24 23 9 39 39 H 1.09001 * 109.46813 * 149.71094 * 24 23 9 40 40 H 1.09004 * 109.47041 * 29.71221 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.7296 2.2541 0.8419 5 6 1.7428 2.4016 -1.3072 6 6 3.7142 1.9386 0.1238 7 7 4.6246 1.2740 -0.5299 8 7 5.7960 1.6721 -0.1818 9 6 5.6949 2.6235 0.7161 10 7 6.7422 3.2995 1.3217 11 6 6.6650 3.1881 2.7844 12 6 8.0376 2.8169 0.8247 13 1 8.0610 2.8933 -0.2625 14 6 8.2303 1.3563 1.2375 15 6 9.1444 3.6549 1.4110 16 1 8.9091 4.4647 2.0857 17 6 10.4576 3.3871 1.0869 18 7 10.7441 2.4006 0.2657 19 14 11.8295 4.4253 1.8142 20 1 12.2821 3.8219 3.0934 21 1 12.9678 4.4788 0.8620 22 1 11.3293 5.8008 2.0655 23 7 4.3638 2.8195 0.9434 24 6 3.7564 3.7791 1.8689 25 1 -0.3633 0.5139 -0.8898 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.9884 3.4636 -1.3074 29 1 2.2353 1.9150 -2.1492 30 1 0.6635 2.2779 -1.3968 31 1 6.7141 2.1378 3.0719 32 1 7.4988 3.7270 3.2343 33 1 5.7250 3.6165 3.1323 34 1 9.1916 0.9984 0.8692 35 1 8.2068 1.2799 2.3247 36 1 7.4298 0.7502 0.8135 37 1 11.6679 2.2125 0.0373 38 1 3.6247 3.3100 2.8440 39 1 2.7866 4.0925 1.4825 40 1 4.4060 4.6487 1.9687 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262888896.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:55 Heat of formation + Delta-G solvation = 101.241394 kcal Electronic energy + Delta-G solvation = -21022.220161 eV Core-core repulsion = 18000.844157 eV Total energy + Delta-G solvation = -3021.376004 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.54095 -37.41450 -34.96412 -33.94114 -32.61496 -29.47776 -28.81534 -28.44004 -27.50500 -25.32018 -25.18485 -24.04558 -21.77210 -20.45133 -19.48980 -16.92445 -16.55049 -16.12120 -15.99694 -15.36977 -15.10328 -14.52510 -14.40708 -13.94560 -13.79415 -13.51549 -13.31673 -13.06121 -13.01606 -12.70959 -12.30104 -11.91404 -11.87053 -11.50053 -11.34934 -11.11614 -10.93865 -10.75685 -10.55016 -10.23917 -10.08491 -10.00930 -9.80715 -9.65702 -9.03607 -8.89107 -8.41266 -7.75725 -7.37841 -6.03968 -4.11664 1.27728 2.24003 2.44362 2.66964 3.28377 3.35421 3.37877 3.42065 4.21539 4.33071 4.55312 4.61369 4.71603 4.81029 4.90069 4.93532 5.08289 5.27289 5.31763 5.33574 5.42554 5.53381 5.60246 5.74412 5.95405 5.99643 6.11617 6.30272 6.45272 6.79267 6.92352 7.09450 7.21196 7.44794 7.63603 7.72673 7.96157 8.27350 8.42479 8.89655 9.34481 9.52931 11.02371 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.038096 B = 0.003965 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.814561 B = 7060.554952 C = 7349.076675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.200 6.200 3 C 0.038 3.962 4 H 0.095 0.905 5 C -0.143 4.143 6 C 0.151 3.849 7 N -0.257 5.257 8 N -0.313 5.313 9 C 0.392 3.608 10 N -0.450 5.450 11 C 0.029 3.971 12 C 0.228 3.772 13 H 0.056 0.944 14 C -0.172 4.172 15 C -0.516 4.516 16 H 0.064 0.936 17 C 0.064 3.936 18 N -0.883 5.883 19 Si 0.900 3.100 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 N -0.489 5.489 24 C 0.078 3.922 25 H 0.077 0.923 26 H 0.102 0.898 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.036 0.964 32 H 0.096 0.904 33 H 0.048 0.952 34 H 0.091 0.909 35 H 0.021 0.979 36 H 0.038 0.962 37 H 0.263 0.737 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.465 1.172 3.444 20.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.025 5.975 3 C -0.093 4.093 4 H 0.113 0.887 5 C -0.202 4.202 6 C -0.117 4.117 7 N -0.098 5.098 8 N -0.159 5.159 9 C 0.037 3.963 10 N -0.173 5.173 11 C -0.118 4.118 12 C 0.124 3.876 13 H 0.074 0.926 14 C -0.231 4.231 15 C -0.555 4.555 16 H 0.082 0.918 17 C -0.139 4.139 18 N -0.520 5.520 19 Si 0.728 3.272 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.199 1.199 23 N -0.187 5.187 24 C -0.065 4.065 25 H 0.096 0.904 26 H 0.121 0.879 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.115 0.885 33 H 0.067 0.933 34 H 0.110 0.890 35 H 0.040 0.960 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.995 -0.260 2.318 19.137 hybrid contribution -0.552 1.927 1.569 2.545 sum -19.547 1.666 3.887 19.999 Atomic orbital electron populations 1.23521 0.95877 1.06529 1.04704 1.87586 1.04668 1.07427 1.97793 1.21079 0.89285 0.96759 1.02201 0.88694 1.22096 1.01001 1.01138 0.96009 1.23217 0.95104 0.95959 0.97403 1.73997 0.94839 1.20812 1.20107 1.74925 1.14119 1.10261 1.16554 1.23352 0.82556 0.92832 0.97575 1.59327 1.02642 1.49416 1.05919 1.22469 1.02187 1.01022 0.86128 1.19404 0.79584 0.91582 0.97022 0.92630 1.22410 1.03671 0.98978 0.98063 1.21016 0.90041 1.15571 1.28855 0.91823 1.24897 0.98598 0.95319 0.95067 1.69924 1.19134 1.28935 1.34054 0.86474 0.81473 0.80523 0.78774 1.20701 1.21143 1.19861 1.45948 1.06237 1.32091 1.34462 1.22035 0.99471 0.92638 0.92402 0.90376 0.87933 0.90784 0.91662 0.90045 0.91702 0.94585 0.88518 0.93284 0.89003 0.95965 0.94327 0.92712 0.90684 0.90008 0.88513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 10.45 101.05 1.06 0.03 16 2 S -0.20 -2.52 21.63 -107.50 -2.33 -4.85 16 3 C 0.04 0.45 3.10 -27.89 -0.09 0.37 16 4 H 0.09 0.89 7.28 -51.92 -0.38 0.51 16 5 C -0.14 -1.45 9.08 37.15 0.34 -1.11 16 6 C 0.15 2.54 6.69 -154.01 -1.03 1.51 16 7 N -0.26 -5.45 11.98 32.99 0.40 -5.06 16 8 N -0.31 -7.40 9.31 30.31 0.28 -7.12 16 9 C 0.39 8.28 6.75 -318.87 -2.15 6.13 16 10 N -0.45 -9.81 4.80 -176.08 -0.85 -10.65 16 11 C 0.03 0.53 8.60 60.06 0.52 1.05 16 12 C 0.23 5.89 2.03 -68.87 -0.14 5.75 16 13 H 0.06 1.65 7.95 -51.93 -0.41 1.23 16 14 C -0.17 -4.43 8.26 37.16 0.31 -4.12 16 15 C -0.52 -13.82 7.89 -34.44 -0.27 -14.09 16 16 H 0.06 1.65 6.77 -52.49 -0.36 1.29 16 17 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 18 N -0.88 -25.28 11.32 55.43 0.63 -24.66 16 19 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 N -0.49 -8.12 3.21 -121.45 -0.39 -8.51 16 24 C 0.08 0.85 9.13 59.85 0.55 1.40 16 25 H 0.08 0.49 7.14 -51.93 -0.37 0.12 16 26 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 27 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 30 H 0.06 0.48 6.92 -51.93 -0.36 0.12 16 31 H 0.04 0.68 6.51 -51.93 -0.34 0.35 16 32 H 0.10 1.82 6.41 -51.93 -0.33 1.48 16 33 H 0.05 0.70 5.41 -51.93 -0.28 0.42 16 34 H 0.09 2.58 6.07 -51.93 -0.32 2.27 16 35 H 0.02 0.53 6.47 -51.93 -0.34 0.19 16 36 H 0.04 0.99 5.87 -51.93 -0.30 0.68 16 37 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.07 0.70 7.86 -51.93 -0.41 0.29 16 39 H 0.08 0.64 7.51 -51.93 -0.39 0.25 16 40 H 0.10 1.06 7.55 -51.93 -0.39 0.67 16 LS Contribution 327.02 15.07 4.93 4.93 Total: -1.00 -32.67 327.02 -9.16 -41.83 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -5.80 Total: -0.36 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -1.01 Total: -1.43 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: 0.07 Total: -55.99 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -2.52 SS G_CDS: -2.33 Total: -4.85 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.67 -9.16 -41.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262888896.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.071 kcal (2) G-P(sol) polarization free energy of solvation -32.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds