Wall clock time and date at job start Tue Mar 31 2020 06:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.81393 * 102.99885 * 2 1 4 4 H 1.09002 * 109.47440 * 55.00572 * 3 2 1 5 5 C 1.52994 * 109.47631 * 295.00265 * 3 2 1 6 6 C 1.50701 * 109.47259 * 175.00175 * 3 2 1 7 7 N 1.30302 * 126.34566 * 44.95606 * 6 3 2 8 8 N 1.28526 * 110.05397 * 180.02562 * 7 6 3 9 9 C 1.31214 * 109.86062 * 359.74976 * 8 7 6 10 10 N 1.38582 * 126.47636 * 180.25557 * 9 8 7 11 11 C 1.46898 * 111.00284 * 236.21974 * 10 9 8 12 12 C 1.46904 * 110.99611 * 0.16962 * 10 9 8 13 13 H 1.09005 * 109.46774 * 54.99890 * 12 10 9 14 14 C 1.52995 * 109.47171 * 294.99979 * 12 10 9 15 15 C 1.50699 * 109.47016 * 174.99580 * 12 10 9 16 16 H 1.07998 * 120.00089 * 0.02562 * 15 12 10 17 17 C 1.37878 * 120.00213 * 179.97438 * 15 12 10 18 18 N 1.31515 * 119.99525 * 0.02562 * 17 15 12 19 19 Si 1.86792 * 120.00407 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.47168 * 89.99743 * 19 17 15 21 21 H 1.48494 * 109.47478 * 210.00164 * 19 17 15 22 22 H 1.48503 * 109.46888 * 330.00497 * 19 17 15 23 23 N 1.36457 * 107.05515 * 0.39791 * 9 8 7 24 24 C 1.46499 * 127.13801 * 179.87354 * 23 9 8 25 25 H 1.08992 * 109.47198 * 59.99267 * 1 2 3 26 26 H 1.08999 * 109.47290 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46408 * 299.99665 * 1 2 3 28 28 H 1.08998 * 109.47654 * 180.02562 * 5 3 2 29 29 H 1.09007 * 109.47366 * 300.00419 * 5 3 2 30 30 H 1.09004 * 109.47146 * 60.00026 * 5 3 2 31 31 H 1.09001 * 109.47225 * 59.99310 * 11 10 9 32 32 H 1.08999 * 109.46778 * 179.97438 * 11 10 9 33 33 H 1.09001 * 109.46692 * 299.99313 * 11 10 9 34 34 H 1.08996 * 109.47146 * 180.02562 * 14 12 10 35 35 H 1.09005 * 109.47056 * 300.00186 * 14 12 10 36 36 H 1.08996 * 109.47391 * 60.00050 * 14 12 10 37 37 H 0.97005 * 119.99841 * 179.97438 * 18 17 15 38 38 H 1.09002 * 109.47391 * 269.71037 * 24 23 9 39 39 H 1.09001 * 109.46813 * 149.71094 * 24 23 9 40 40 H 1.09004 * 109.47041 * 29.71221 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.7296 2.2541 0.8419 5 6 1.7428 2.4016 -1.3072 6 6 3.7142 1.9386 0.1238 7 7 4.6246 1.2740 -0.5299 8 7 5.7960 1.6721 -0.1818 9 6 5.6949 2.6235 0.7161 10 7 6.7422 3.2995 1.3217 11 6 6.6650 3.1881 2.7844 12 6 8.0376 2.8169 0.8247 13 1 8.0610 2.8933 -0.2625 14 6 8.2303 1.3563 1.2375 15 6 9.1444 3.6549 1.4110 16 1 8.9091 4.4647 2.0857 17 6 10.4576 3.3871 1.0869 18 7 10.7441 2.4006 0.2657 19 14 11.8295 4.4253 1.8142 20 1 12.2821 3.8219 3.0934 21 1 12.9678 4.4788 0.8620 22 1 11.3293 5.8008 2.0655 23 7 4.3638 2.8195 0.9434 24 6 3.7564 3.7791 1.8689 25 1 -0.3633 0.5139 -0.8898 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.9884 3.4636 -1.3074 29 1 2.2353 1.9150 -2.1492 30 1 0.6635 2.2779 -1.3968 31 1 6.7141 2.1378 3.0719 32 1 7.4988 3.7270 3.2343 33 1 5.7250 3.6165 3.1323 34 1 9.1916 0.9984 0.8692 35 1 8.2068 1.2799 2.3247 36 1 7.4298 0.7502 0.8135 37 1 11.6679 2.2125 0.0373 38 1 3.6247 3.3100 2.8440 39 1 2.7866 4.0925 1.4825 40 1 4.4060 4.6487 1.9687 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262888896.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:54 Heat of formation + Delta-G solvation = 81.259476 kcal Electronic energy + Delta-G solvation = -21023.086642 eV Core-core repulsion = 18000.844157 eV Total energy + Delta-G solvation = -3022.242485 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.98988 -39.14685 -36.23489 -35.27394 -34.36512 -30.92779 -30.36913 -29.41800 -28.58593 -27.30233 -26.74401 -25.18649 -23.49101 -21.71985 -21.19161 -18.40133 -18.04186 -17.62748 -17.30401 -16.91914 -16.60805 -16.06387 -15.44986 -15.18716 -15.00068 -14.62267 -14.53844 -14.23834 -13.94924 -13.80910 -13.53951 -13.33677 -13.10827 -12.96594 -12.76153 -12.67142 -12.65498 -12.45559 -12.27582 -12.10305 -11.99684 -11.40547 -11.13701 -10.90017 -10.75869 -10.62443 -10.49825 -9.03512 -8.69470 -8.12199 -6.27899 0.30460 0.96743 1.37810 1.45937 1.47143 1.57763 1.64560 1.95096 2.42310 2.95887 3.16931 3.20869 3.64722 3.79870 3.91637 4.10196 4.28208 4.33145 4.41308 4.42968 4.48440 4.52801 4.60845 4.65978 4.69959 4.79317 4.93866 4.98082 4.98315 5.07757 5.13409 5.18992 5.43097 5.58971 5.59440 5.84200 6.03427 6.19649 6.55495 6.81544 7.41121 7.85872 8.94684 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.038096 B = 0.003965 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.814561 B = 7060.554952 C = 7349.076675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.283 6.283 3 C 0.048 3.952 4 H 0.134 0.866 5 C -0.138 4.138 6 C 0.177 3.823 7 N -0.308 5.308 8 N -0.368 5.368 9 C 0.371 3.629 10 N -0.452 5.452 11 C 0.031 3.969 12 C 0.241 3.759 13 H 0.004 0.996 14 C -0.153 4.153 15 C -0.525 4.525 16 H 0.074 0.926 17 C 0.011 3.989 18 N -0.920 5.920 19 Si 0.971 3.029 20 H -0.272 1.272 21 H -0.288 1.288 22 H -0.262 1.262 23 N -0.480 5.480 24 C 0.062 3.938 25 H 0.094 0.906 26 H 0.111 0.889 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.101 0.899 31 H 0.023 0.977 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.062 0.938 35 H 0.030 0.970 36 H 0.030 0.970 37 H 0.263 0.737 38 H 0.099 0.901 39 H 0.122 0.878 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.518 3.099 5.417 24.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.058 6.058 3 C -0.083 4.083 4 H 0.152 0.848 5 C -0.198 4.198 6 C -0.092 4.092 7 N -0.147 5.147 8 N -0.212 5.212 9 C 0.014 3.986 10 N -0.175 5.175 11 C -0.115 4.115 12 C 0.135 3.865 13 H 0.022 0.978 14 C -0.212 4.212 15 C -0.564 4.564 16 H 0.092 0.908 17 C -0.188 4.188 18 N -0.558 5.558 19 Si 0.796 3.204 20 H -0.198 1.198 21 H -0.214 1.214 22 H -0.186 1.186 23 N -0.177 5.177 24 C -0.079 4.079 25 H 0.113 0.887 26 H 0.130 0.870 27 H 0.114 0.886 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.119 0.881 31 H 0.041 0.959 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.072 0.928 38 H 0.117 0.883 39 H 0.140 0.860 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.093 1.685 4.312 22.573 hybrid contribution 0.165 1.282 0.932 1.593 sum -21.928 2.966 5.244 22.740 Atomic orbital electron populations 1.23571 0.90302 1.07755 1.06567 1.87927 1.10800 1.08981 1.98060 1.21337 0.85870 0.96406 1.04682 0.84833 1.22078 1.02941 1.00904 0.93830 1.24174 0.96830 0.93495 0.94739 1.73893 0.94999 1.23085 1.22757 1.74759 1.16201 1.12148 1.18107 1.23196 0.84176 0.93311 0.97952 1.59203 1.01219 1.49448 1.07625 1.22561 1.04434 1.00525 0.84013 1.18937 0.82019 0.91457 0.94111 0.97798 1.22173 1.01631 0.99242 0.98180 1.21323 0.90504 1.15768 1.28775 0.90806 1.25821 1.01254 0.96425 0.95333 1.70096 1.19549 1.30684 1.35496 0.85353 0.77922 0.79183 0.77929 1.19784 1.21388 1.18607 1.46177 1.04449 1.32422 1.34641 1.22558 1.00983 0.91657 0.92653 0.88678 0.87039 0.88626 0.90896 0.92767 0.88074 0.95859 0.89003 0.88779 0.91886 0.95077 0.95084 0.92819 0.88251 0.86004 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.45 113.37 1.19 -0.06 16 2 S -0.28 -6.67 21.63 -56.49 -1.22 -7.89 16 3 C 0.05 1.01 3.10 29.85 0.09 1.10 16 4 H 0.13 1.80 7.28 -2.39 -0.02 1.78 16 5 C -0.14 -2.40 9.08 71.98 0.65 -1.74 16 6 C 0.18 5.80 6.69 137.64 0.92 6.72 16 7 N -0.31 -13.53 11.98 -49.53 -0.59 -14.13 16 8 N -0.37 -18.26 9.31 -58.00 -0.54 -18.80 16 9 C 0.37 15.94 6.75 260.11 1.76 17.69 16 10 N -0.45 -19.97 4.80 -710.99 -3.42 -23.38 16 11 C 0.03 1.11 8.60 127.69 1.10 2.21 16 12 C 0.24 13.00 2.03 44.17 0.09 13.09 16 13 H 0.00 0.26 7.95 -2.38 -0.02 0.24 16 14 C -0.15 -8.29 8.26 71.98 0.59 -7.70 16 15 C -0.53 -28.64 7.89 25.60 0.20 -28.44 16 16 H 0.07 3.79 6.77 -2.91 -0.02 3.77 16 17 C 0.01 0.61 5.30 84.65 0.45 1.06 16 18 N -0.92 -54.74 11.32 21.45 0.24 -54.50 16 19 Si 0.97 43.11 29.54 68.60 2.03 45.14 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 23 N -0.48 -15.15 3.21 -538.17 -1.73 -16.88 16 24 C 0.06 1.10 9.13 127.77 1.17 2.27 16 25 H 0.09 0.76 7.14 -2.39 -0.02 0.74 16 26 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.10 1.04 6.92 -2.38 -0.02 1.02 16 31 H 0.02 0.87 6.51 -2.39 -0.02 0.85 16 32 H 0.09 3.34 6.41 -2.39 -0.02 3.33 16 33 H 0.09 2.44 5.41 -2.39 -0.01 2.42 16 34 H 0.06 3.76 6.07 -2.39 -0.01 3.74 16 35 H 0.03 1.56 6.47 -2.38 -0.02 1.54 16 36 H 0.03 1.69 5.87 -2.39 -0.01 1.68 16 37 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 38 H 0.10 1.35 7.86 -2.39 -0.02 1.33 16 39 H 0.12 1.22 7.51 -2.39 -0.02 1.20 16 40 H 0.10 1.79 7.55 -2.38 -0.02 1.77 16 Total: -1.00 -78.04 327.02 4.02 -74.02 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 1.04 Total: 10.23 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 8.21 Total: 6.20 kcal Atomic # 7 Polarization: -121.66 SS G_CDS: -6.03 Total: -127.69 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: -6.67 SS G_CDS: -1.22 Total: -7.89 kcal Total: -78.04 4.02 -74.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262888896.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.277 kcal (2) G-P(sol) polarization free energy of solvation -78.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds