Wall clock time and date at job start Tue Mar 31 2020 05:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47019 * 269.99948 * 3 2 1 5 5 H 1.48497 * 109.46894 * 30.00246 * 3 2 1 6 6 H 1.48499 * 109.46573 * 150.00273 * 3 2 1 7 7 C 1.37882 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00341 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99560 * 179.97438 * 7 2 1 10 10 N 1.46510 * 109.46748 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99729 * 180.02562 * 10 9 7 12 12 O 1.21584 * 120.00176 * 0.02562 * 11 10 9 13 13 N 1.34772 * 119.99844 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00143 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.55880 * 35.00097 * 14 13 11 16 16 C 1.53188 * 109.55990 * 274.77940 * 14 13 11 17 17 C 1.53089 * 109.28624 * 182.43396 * 16 14 13 18 18 O 1.43055 * 109.35922 * 58.23270 * 17 16 14 19 19 C 1.41974 * 114.26467 * 300.33997 * 18 17 16 20 20 C 1.54640 * 110.35250 * 296.17529 * 19 18 17 21 21 C 1.55066 * 100.87982 * 275.00226 * 20 19 18 22 22 O 1.43706 * 105.20089 * 324.19190 * 21 20 19 23 23 C 1.43418 * 109.93549 * 24.31558 * 22 21 20 24 24 C 1.52512 * 111.48254 * 58.87281 * 19 18 17 25 25 H 0.97004 * 119.99928 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47361 * 60.00475 * 9 7 2 27 27 H 1.08992 * 109.47541 * 299.99736 * 9 7 2 28 28 H 0.96999 * 120.00045 * 0.02562 * 10 9 7 29 29 H 0.96999 * 119.99929 * 0.02562 * 13 11 10 30 30 H 1.08994 * 109.50724 * 302.37864 * 16 14 13 31 31 H 1.09002 * 109.49926 * 62.45882 * 16 14 13 32 32 H 1.09006 * 109.48956 * 178.19414 * 17 16 14 33 33 H 1.09001 * 109.49380 * 298.26399 * 17 16 14 34 34 H 1.09005 * 111.13724 * 32.90470 * 20 19 18 35 35 H 1.08997 * 111.14012 * 157.09889 * 20 19 18 36 36 H 1.08999 * 110.29839 * 205.26087 * 21 20 19 37 37 H 1.09001 * 110.29608 * 83.12740 * 21 20 19 38 38 H 1.08996 * 109.85367 * 238.37844 * 23 22 21 39 39 H 1.08996 * 109.86192 * 117.30234 * 23 22 21 40 40 H 1.09001 * 109.65280 * 184.58573 * 24 19 18 41 41 H 1.08999 * 109.48791 * 64.37158 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1295 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 5.3249 -2.8217 -0.0009 12 8 6.1150 -1.8975 -0.0005 13 7 5.7741 -4.0923 -0.0003 14 6 7.2144 -4.3601 0.0003 15 1 7.7267 -3.5994 0.5894 16 6 7.7412 -4.3361 -1.4379 17 6 9.2338 -4.6763 -1.4355 18 8 9.4260 -5.9623 -0.8390 19 6 8.9677 -6.0582 0.5013 20 6 9.7778 -5.1101 1.4158 21 6 11.0037 -6.0000 1.7473 22 8 10.4838 -7.3361 1.8456 23 6 9.2714 -7.4461 1.0874 24 6 7.4791 -5.7433 0.6064 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6805 0.8889 27 1 3.8745 -0.6801 -0.8911 28 1 3.3694 -3.3127 -0.0010 29 1 5.1438 -4.8296 -0.0003 30 1 7.2015 -5.0707 -2.0355 31 1 7.5945 -3.3430 -1.8626 32 1 9.6049 -4.6917 -2.4603 33 1 9.7772 -3.9248 -0.8628 34 1 10.0790 -4.2098 0.8803 35 1 9.2182 -4.8604 2.3172 36 1 11.4463 -5.6958 2.6958 37 1 11.7421 -5.9393 0.9478 38 1 8.4552 -7.7599 1.7380 39 1 9.4030 -8.1678 0.2813 40 1 7.1770 -5.7457 1.6537 41 1 6.9090 -6.4950 0.0606 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321357262.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:07 Heat of formation + Delta-G solvation = -122.883780 kcal Electronic energy + Delta-G solvation = -22993.275871 eV Core-core repulsion = 19487.135448 eV Total energy + Delta-G solvation = -3506.140423 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.10599 -39.39210 -37.88809 -35.37187 -34.18485 -32.64043 -32.41998 -31.33685 -30.34901 -27.94968 -26.97205 -24.28121 -23.02833 -22.62441 -21.57520 -20.30981 -19.74670 -18.35299 -17.47585 -16.63176 -16.43526 -16.15431 -15.76592 -15.29263 -15.16482 -14.86219 -14.53583 -14.43050 -14.01397 -13.59239 -13.51791 -13.24836 -13.09067 -12.40719 -12.31779 -12.21255 -12.14574 -11.94832 -11.52133 -11.29483 -11.10848 -11.01319 -10.78294 -10.51915 -10.00941 -9.94810 -9.86725 -9.57483 -9.47504 -8.94516 -8.77766 -8.06894 -6.22715 -4.24803 3.10119 3.25779 3.26504 3.33474 3.41310 3.54048 3.71882 4.03302 4.32325 4.38466 4.42069 4.60436 4.72630 4.76026 4.86235 4.94396 4.98754 5.06634 5.12914 5.18490 5.28560 5.36371 5.40685 5.45520 5.54070 5.59398 5.65039 5.73473 5.89957 6.07566 6.58900 6.70124 6.70530 6.92585 7.08698 7.20446 7.36925 7.53038 8.25780 8.65396 8.78645 9.15489 9.38402 10.89284 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.037614 B = 0.003132 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.230935 B = 8938.711082 C = 9027.952359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.239 3.761 10 N -0.722 5.722 11 C 0.695 3.305 12 O -0.604 6.604 13 N -0.751 5.751 14 C 0.168 3.832 15 H 0.089 0.911 16 C -0.169 4.169 17 C 0.062 3.938 18 O -0.364 6.364 19 C 0.092 3.908 20 C -0.188 4.188 21 C 0.057 3.943 22 O -0.382 6.382 23 C 0.068 3.932 24 C -0.145 4.145 25 H 0.268 0.732 26 H 0.023 0.977 27 H 0.018 0.982 28 H 0.392 0.608 29 H 0.393 0.607 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.092 -14.141 0.745 23.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.116 3.884 10 N -0.374 5.374 11 C 0.395 3.605 12 O -0.483 6.483 13 N -0.407 5.407 14 C 0.061 3.939 15 H 0.107 0.893 16 C -0.208 4.208 17 C -0.015 4.015 18 O -0.283 6.283 19 C 0.051 3.949 20 C -0.225 4.225 21 C -0.020 4.020 22 O -0.302 6.302 23 C -0.009 4.009 24 C -0.183 4.183 25 H 0.077 0.923 26 H 0.041 0.959 27 H 0.036 0.964 28 H 0.226 0.774 29 H 0.227 0.773 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 19.784 -13.425 0.774 23.922 hybrid contribution -0.644 0.703 -0.141 0.964 sum 19.140 -12.722 0.633 22.991 Atomic orbital electron populations 1.69880 1.06220 1.27437 1.49493 1.24786 0.94789 0.99175 0.93882 0.86807 0.80583 0.83189 0.79055 1.19851 1.20906 1.18465 1.21093 0.88555 0.95193 1.53258 0.90311 1.19359 0.94838 0.77594 0.96614 1.45416 1.03709 1.11101 1.77179 1.16125 0.83581 0.82689 0.78101 1.90854 1.55373 1.43170 1.58939 1.45169 1.06858 1.06716 1.81911 1.20666 0.81385 0.96029 0.95783 0.89297 1.22661 0.96324 1.03732 0.98106 1.22687 0.95314 0.84774 0.98708 1.87819 1.82140 1.32973 1.25337 1.22324 0.93045 0.95765 0.83738 1.23883 0.97747 0.99807 1.01089 1.23357 0.95654 0.81241 1.01710 1.88445 1.39848 1.30145 1.71752 1.23040 0.87792 0.95026 0.95016 1.22327 0.95509 0.97610 1.02892 0.92251 0.95925 0.96387 0.77440 0.77316 0.90818 0.89726 0.88225 0.92510 0.88927 0.89066 0.89584 0.91807 0.89583 0.90060 0.89602 0.90053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.96 55.43 0.77 -25.67 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.54 -14.85 9.83 -34.44 -0.34 -15.19 16 8 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 9 C 0.24 5.88 4.50 -5.19 -0.02 5.86 16 10 N -0.72 -14.58 5.55 -66.41 -0.37 -14.95 16 11 C 0.70 13.23 8.53 -86.92 -0.74 12.49 16 12 O -0.60 -13.77 16.01 5.29 0.08 -13.68 16 13 N -0.75 -10.17 5.09 -58.42 -0.30 -10.47 16 14 C 0.17 1.96 2.34 -67.67 -0.16 1.81 16 15 H 0.09 1.21 7.05 -51.93 -0.37 0.84 16 16 C -0.17 -1.89 5.70 -26.59 -0.15 -2.04 16 17 C 0.06 0.58 6.62 37.20 0.25 0.83 16 18 O -0.36 -3.72 10.24 -35.23 -0.36 -4.08 16 19 C 0.09 0.83 0.84 -89.65 -0.08 0.76 16 20 C -0.19 -1.60 5.32 -24.78 -0.13 -1.74 16 21 C 0.06 0.49 7.78 38.25 0.30 0.78 16 22 O -0.38 -4.04 11.37 -35.23 -0.40 -4.44 16 23 C 0.07 0.60 7.18 37.52 0.27 0.87 16 24 C -0.15 -1.28 4.22 -26.82 -0.11 -1.40 16 25 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 27 H 0.02 0.47 7.57 -51.93 -0.39 0.07 16 28 H 0.39 6.94 8.34 -40.82 -0.34 6.60 16 29 H 0.39 4.25 8.62 -40.82 -0.35 3.90 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.51 6.26 -51.93 -0.32 0.19 16 34 H 0.09 0.78 6.10 -51.93 -0.32 0.46 16 35 H 0.09 0.75 7.93 -51.93 -0.41 0.34 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.63 7.78 -51.93 -0.40 0.22 16 39 H 0.08 0.71 8.06 -51.93 -0.42 0.29 16 40 H 0.09 0.71 8.05 -51.93 -0.42 0.29 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 326.72 15.07 4.92 4.92 Total: -1.00 -33.14 326.72 -7.57 -40.71 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -6.23 Total: 5.83 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -1.02 Total: 5.11 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: 0.11 Total: -51.09 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.68 Total: -22.20 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.14 -7.57 -40.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321357262.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.177 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds